Wall clock time and date at job start Sun Mar 29 2020 22:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47295 * 2 1 4 4 N 1.46497 * 110.45932 * 57.87786 * 3 2 1 5 5 C 1.34780 * 120.00112 * 61.46025 * 4 3 2 6 6 O 1.21685 * 119.99443 * 4.32782 * 5 4 3 7 7 C 1.46375 * 120.00182 * 184.32432 * 5 4 3 8 8 H 1.08004 * 119.99578 * 0.02562 * 7 5 4 9 9 C 1.40045 * 120.00095 * 180.02562 * 7 5 4 10 10 N 1.30677 * 119.99787 * 359.97438 * 9 7 5 11 11 Si 1.86798 * 120.00201 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46821 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47206 * 119.99876 * 11 9 7 14 14 H 1.48500 * 109.47070 * 240.00114 * 11 9 7 15 15 C 1.54795 * 110.62599 * 180.53653 * 3 2 1 16 16 C 1.54479 * 103.92752 * 118.69636 * 15 3 2 17 17 O 1.44426 * 104.89884 * 24.00263 * 16 15 3 18 18 C 1.44417 * 105.27664 * 319.43560 * 17 16 15 19 19 H 1.08999 * 109.47172 * 175.82199 * 1 2 3 20 20 H 1.09001 * 109.47663 * 295.82227 * 1 2 3 21 21 H 1.09000 * 109.46837 * 55.81925 * 1 2 3 22 22 H 1.08998 * 109.47110 * 239.99408 * 2 1 3 23 23 H 1.09007 * 109.46610 * 119.99415 * 2 1 3 24 24 H 0.97001 * 120.00105 * 241.46638 * 4 3 2 25 25 H 0.96994 * 119.99749 * 179.97438 * 10 9 7 26 26 H 1.08999 * 110.59784 * 0.08478 * 15 3 2 27 27 H 1.09000 * 110.55315 * 237.28474 * 15 3 2 28 28 H 1.09006 * 110.36986 * 265.11899 * 16 15 3 29 29 H 1.08998 * 110.37308 * 142.89093 * 16 15 3 30 30 H 1.09000 * 110.37430 * 159.34411 * 18 17 16 31 31 H 1.08998 * 110.37525 * 281.67389 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5227 2.1685 1.1624 5 6 1.8315 1.7550 2.4075 6 8 2.6029 0.8274 2.5666 7 6 1.2391 2.4217 3.5682 8 1 0.5542 3.2447 3.4268 9 6 1.5605 1.9923 4.8619 10 7 2.3888 0.9962 5.0328 11 14 0.8039 2.8426 6.3431 12 1 -0.0944 3.9320 5.8831 13 1 0.0235 1.8576 7.1342 14 1 1.8818 3.4147 7.1894 15 6 3.5876 1.4736 -0.0136 16 6 3.9333 2.2050 -1.3296 17 8 2.7662 3.0011 -1.6296 18 6 1.6380 2.1586 -1.3084 19 1 -0.3633 -1.0249 -0.0749 20 1 -0.3634 0.4476 0.9250 21 1 -0.3633 0.5774 -0.8502 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 0.9577 2.9469 1.0361 25 1 2.6116 0.6991 5.9288 26 1 3.9915 0.4613 -0.0218 27 1 3.9667 2.0301 0.8436 28 1 4.1165 1.4848 -2.1271 29 1 4.8040 2.8457 -1.1903 30 1 0.7452 2.7637 -1.1509 31 1 1.4692 1.4315 -2.1026 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307517127.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:00 Heat of formation + Delta-G solvation = -92.409693 kcal Electronic energy + Delta-G solvation = -14986.750351 eV Core-core repulsion = 12460.878483 eV Total energy + Delta-G solvation = -2525.871867 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.60766 -36.86910 -34.21302 -32.38815 -31.01222 -30.09065 -27.66246 -25.94745 -23.46339 -21.73098 -20.76894 -18.45759 -17.19949 -15.96412 -15.44783 -15.19285 -15.07581 -14.15854 -13.66797 -13.52771 -12.94216 -12.58728 -12.13061 -12.02456 -11.62202 -11.32903 -11.08702 -11.03220 -10.78905 -10.55182 -10.43879 -10.24483 -10.13950 -10.01842 -9.41534 -8.84789 -7.52616 -7.44942 -6.17141 -4.62429 3.12828 3.21534 3.25726 4.10705 4.29538 4.58900 4.76310 5.09201 5.29490 5.38573 5.48870 5.64780 5.77933 5.85102 5.89790 5.93613 5.98684 6.17873 6.32397 6.37357 6.52901 6.80177 6.84284 6.99018 7.14627 7.44580 7.94153 8.15523 8.35555 9.04252 9.57082 10.61364 10.81281 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042792 B = 0.009090 C = 0.008740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.172094 B = 3079.615189 C = 3202.799666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.162 3.838 4 N -0.752 5.752 5 C 0.559 3.441 6 O -0.574 6.574 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.089 3.911 10 N -0.768 5.768 11 Si 0.905 3.095 12 H -0.264 1.264 13 H -0.277 1.277 14 H -0.277 1.277 15 C -0.147 4.147 16 C 0.043 3.957 17 O -0.379 6.379 18 C 0.045 3.955 19 H 0.044 0.956 20 H 0.063 0.937 21 H 0.042 0.958 22 H 0.051 0.949 23 H 0.089 0.911 24 H 0.380 0.620 25 H 0.266 0.734 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.742 0.848 -9.122 9.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.073 3.927 4 N -0.407 5.407 5 C 0.363 3.637 6 O -0.457 6.457 7 C -0.583 4.583 8 H 0.084 0.916 9 C -0.131 4.131 10 N -0.397 5.397 11 Si 0.729 3.271 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.202 1.202 15 C -0.186 4.186 16 C -0.034 4.034 17 O -0.298 6.298 18 C -0.032 4.032 19 H 0.063 0.937 20 H 0.082 0.918 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.107 0.893 24 H 0.212 0.788 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.087 0.246 -8.953 9.022 hybrid contribution -0.622 0.562 0.793 1.154 sum -1.708 0.809 -8.159 8.375 Atomic orbital electron populations 1.21676 0.96118 1.00441 1.01853 1.21855 0.95932 0.96052 1.02571 1.21228 0.92555 0.92213 0.86670 1.46220 1.56659 1.33037 1.04833 1.18117 0.81210 0.83497 0.80896 1.90570 1.38389 1.31679 1.85042 1.20936 1.28976 1.18573 0.89799 0.91582 1.25675 0.93643 0.93960 0.99801 1.70025 1.26160 1.21063 1.22426 0.86366 0.79446 0.79856 0.81384 1.18826 1.20237 1.20239 1.23289 0.96373 1.01323 0.97574 1.23475 0.89337 0.94368 0.96235 1.89074 1.15237 1.38317 1.87123 1.23705 0.90321 0.93838 0.95365 0.93676 0.91763 0.93850 0.92987 0.89265 0.78835 0.92285 0.90725 0.89615 0.92990 0.89684 0.89169 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.57 37.16 0.36 -2.02 16 2 C -0.13 -2.30 4.52 -26.73 -0.12 -2.42 16 3 C 0.16 3.04 0.66 -130.10 -0.09 2.96 16 4 N -0.75 -16.45 4.39 -47.40 -0.21 -16.66 16 5 C 0.56 15.26 6.96 -12.99 -0.09 15.17 16 6 O -0.57 -17.43 12.37 5.20 0.06 -17.37 16 7 C -0.55 -15.20 9.54 -35.63 -0.34 -15.54 16 8 H 0.07 1.71 7.85 -52.48 -0.41 1.30 16 9 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 10 N -0.77 -22.67 11.83 55.55 0.66 -22.02 16 11 Si 0.90 20.14 29.56 -169.99 -5.02 15.11 16 12 H -0.26 -5.71 7.11 56.52 0.40 -5.30 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 15 C -0.15 -2.78 5.53 -25.01 -0.14 -2.92 16 16 C 0.04 0.67 7.62 37.93 0.29 0.96 16 17 O -0.38 -6.49 11.65 -35.23 -0.41 -6.90 16 18 C 0.04 0.70 5.83 37.93 0.22 0.93 16 19 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 20 H 0.06 1.22 7.74 -51.93 -0.40 0.82 16 21 H 0.04 0.61 7.30 -51.93 -0.38 0.23 16 22 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 23 H 0.09 2.01 6.56 -51.92 -0.34 1.67 16 24 H 0.38 7.59 8.26 -40.82 -0.34 7.25 16 25 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 26 H 0.07 1.38 7.75 -51.93 -0.40 0.98 16 27 H 0.09 1.93 7.26 -51.93 -0.38 1.55 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.09 1.32 7.76 -51.93 -0.40 0.91 16 31 H 0.06 0.86 7.83 -51.93 -0.41 0.45 16 LS Contribution 255.98 15.07 3.86 3.86 Total: -1.00 -32.07 255.98 -5.35 -37.42 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.28 Total: 7.09 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 0.00 Total: -0.54 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.45 Total: -38.67 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.35 Total: -24.27 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.07 -5.35 -37.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307517127.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.989 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds