Wall clock time and date at job start Sun Mar 29 2020 22:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47295 * 2 1 4 4 N 1.46497 * 110.45932 * 57.87786 * 3 2 1 5 5 C 1.34780 * 120.00112 * 61.46025 * 4 3 2 6 6 O 1.21685 * 119.99443 * 4.32782 * 5 4 3 7 7 C 1.46375 * 120.00182 * 184.32432 * 5 4 3 8 8 H 1.08004 * 119.99578 * 0.02562 * 7 5 4 9 9 C 1.40045 * 120.00095 * 180.02562 * 7 5 4 10 10 N 1.30677 * 119.99787 * 359.97438 * 9 7 5 11 11 Si 1.86798 * 120.00201 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46821 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47206 * 119.99876 * 11 9 7 14 14 H 1.48500 * 109.47070 * 240.00114 * 11 9 7 15 15 C 1.54795 * 110.62599 * 180.53653 * 3 2 1 16 16 C 1.54479 * 103.92752 * 118.69636 * 15 3 2 17 17 O 1.44426 * 104.89884 * 24.00263 * 16 15 3 18 18 C 1.44417 * 105.27664 * 319.43560 * 17 16 15 19 19 H 1.08999 * 109.47172 * 175.82199 * 1 2 3 20 20 H 1.09001 * 109.47663 * 295.82227 * 1 2 3 21 21 H 1.09000 * 109.46837 * 55.81925 * 1 2 3 22 22 H 1.08998 * 109.47110 * 239.99408 * 2 1 3 23 23 H 1.09007 * 109.46610 * 119.99415 * 2 1 3 24 24 H 0.97001 * 120.00105 * 241.46638 * 4 3 2 25 25 H 0.96994 * 119.99749 * 179.97438 * 10 9 7 26 26 H 1.08999 * 110.59784 * 0.08478 * 15 3 2 27 27 H 1.09000 * 110.55315 * 237.28474 * 15 3 2 28 28 H 1.09006 * 110.36986 * 265.11899 * 16 15 3 29 29 H 1.08998 * 110.37308 * 142.89093 * 16 15 3 30 30 H 1.09000 * 110.37430 * 159.34411 * 18 17 16 31 31 H 1.08998 * 110.37525 * 281.67389 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5227 2.1685 1.1624 5 6 1.8315 1.7550 2.4075 6 8 2.6029 0.8274 2.5666 7 6 1.2391 2.4217 3.5682 8 1 0.5542 3.2447 3.4268 9 6 1.5605 1.9923 4.8619 10 7 2.3888 0.9962 5.0328 11 14 0.8039 2.8426 6.3431 12 1 -0.0944 3.9320 5.8831 13 1 0.0235 1.8576 7.1342 14 1 1.8818 3.4147 7.1894 15 6 3.5876 1.4736 -0.0136 16 6 3.9333 2.2050 -1.3296 17 8 2.7662 3.0011 -1.6296 18 6 1.6380 2.1586 -1.3084 19 1 -0.3633 -1.0249 -0.0749 20 1 -0.3634 0.4476 0.9250 21 1 -0.3633 0.5774 -0.8502 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 0.9577 2.9469 1.0361 25 1 2.6116 0.6991 5.9288 26 1 3.9915 0.4613 -0.0218 27 1 3.9667 2.0301 0.8436 28 1 4.1165 1.4848 -2.1271 29 1 4.8040 2.8457 -1.1903 30 1 0.7452 2.7637 -1.1509 31 1 1.4692 1.4315 -2.1026 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307517127.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:00 Heat of formation + Delta-G solvation = -116.561064 kcal Electronic energy + Delta-G solvation = -14987.797633 eV Core-core repulsion = 12460.878483 eV Total energy + Delta-G solvation = -2526.919149 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.09891 -38.71280 -35.88015 -34.48670 -32.77943 -31.52281 -29.16317 -27.91038 -24.82658 -23.11680 -22.63670 -20.14038 -19.16805 -17.40566 -17.39221 -16.59878 -16.56984 -15.83487 -15.37603 -15.03418 -14.59079 -14.26689 -13.93832 -13.50240 -13.19863 -12.90593 -12.83237 -12.61074 -12.44113 -12.37471 -11.99726 -11.95524 -11.67025 -11.48418 -10.92413 -10.70053 -9.65861 -9.33857 -8.25033 -6.80772 1.38248 1.38911 1.55622 2.24424 2.52251 3.01098 3.09776 3.57987 3.81486 3.94353 4.01771 4.19755 4.34343 4.49183 4.53683 4.61175 4.76187 4.81207 4.90967 4.97733 5.12909 5.25359 5.33880 5.41528 5.47133 5.83200 5.92310 6.27643 6.42009 6.91102 7.62672 8.56023 8.74552 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042792 B = 0.009090 C = 0.008740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.172094 B = 3079.615189 C = 3202.799666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.149 3.851 4 N -0.742 5.742 5 C 0.548 3.452 6 O -0.614 6.614 7 C -0.577 4.577 8 H 0.079 0.921 9 C 0.032 3.968 10 N -0.820 5.820 11 Si 0.991 3.009 12 H -0.250 1.250 13 H -0.269 1.269 14 H -0.270 1.270 15 C -0.149 4.149 16 C 0.052 3.948 17 O -0.391 6.391 18 C 0.054 3.946 19 H 0.059 0.941 20 H 0.030 0.970 21 H 0.076 0.924 22 H 0.085 0.915 23 H 0.037 0.963 24 H 0.389 0.611 25 H 0.272 0.728 26 H 0.070 0.930 27 H 0.039 0.961 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.973 1.758 -10.558 11.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C 0.061 3.939 4 N -0.396 5.396 5 C 0.351 3.649 6 O -0.500 6.500 7 C -0.614 4.614 8 H 0.098 0.902 9 C -0.183 4.183 10 N -0.450 5.450 11 Si 0.811 3.189 12 H -0.173 1.173 13 H -0.194 1.194 14 H -0.196 1.196 15 C -0.188 4.188 16 C -0.025 4.025 17 O -0.310 6.310 18 C -0.023 4.023 19 H 0.078 0.922 20 H 0.049 0.951 21 H 0.095 0.905 22 H 0.104 0.896 23 H 0.056 0.944 24 H 0.223 0.777 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.335 1.180 -10.439 10.762 hybrid contribution -0.206 0.247 1.169 1.213 sum -2.541 1.427 -9.270 9.717 Atomic orbital electron populations 1.21622 0.94603 1.01721 1.01486 1.21785 0.97234 0.95408 1.01618 1.21561 0.92413 0.92761 0.87123 1.45912 1.56019 1.33150 1.04523 1.18332 0.80800 0.83046 0.82674 1.90536 1.39984 1.33292 1.86162 1.21468 1.29701 1.19328 0.90930 0.90237 1.26840 0.93699 0.94384 1.03370 1.70181 1.28055 1.23117 1.23637 0.85073 0.78604 0.78791 0.76457 1.17310 1.19402 1.19552 1.23215 0.96704 1.00904 0.98004 1.23512 0.89244 0.94765 0.94938 1.89066 1.15872 1.39140 1.86970 1.23761 0.90290 0.94309 0.93913 0.92236 0.95110 0.90504 0.89639 0.94436 0.77734 0.91833 0.91110 0.94250 0.89596 0.88731 0.87777 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.31 9.57 71.98 0.69 -3.62 16 2 C -0.12 -4.37 4.52 30.59 0.14 -4.24 16 3 C 0.15 5.48 0.66 4.72 0.00 5.48 16 4 N -0.74 -32.81 4.39 -422.11 -1.85 -34.66 16 5 C 0.55 31.05 6.96 86.36 0.60 31.65 16 6 O -0.61 -39.29 12.37 -4.30 -0.05 -39.34 16 7 C -0.58 -32.86 9.54 24.83 0.24 -32.63 16 8 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 9 C 0.03 1.79 5.50 85.30 0.47 2.26 16 10 N -0.82 -50.16 11.83 21.84 0.26 -49.90 16 11 Si 0.99 41.62 29.56 68.60 2.03 43.65 16 12 H -0.25 -9.80 7.11 99.48 0.71 -9.10 16 13 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 14 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 15 C -0.15 -5.69 5.53 31.71 0.18 -5.52 16 16 C 0.05 1.50 7.62 72.48 0.55 2.05 16 17 O -0.39 -12.22 11.65 -148.98 -1.74 -13.95 16 18 C 0.05 1.51 5.83 72.49 0.42 1.93 16 19 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 20 H 0.03 1.15 7.74 -2.39 -0.02 1.13 16 21 H 0.08 1.89 7.30 -2.39 -0.02 1.87 16 22 H 0.09 2.46 8.10 -2.39 -0.02 2.44 16 23 H 0.04 1.74 6.56 -2.38 -0.02 1.72 16 24 H 0.39 15.44 8.26 -92.71 -0.77 14.67 16 25 H 0.27 15.12 8.29 -92.71 -0.77 14.35 16 26 H 0.07 2.68 7.75 -2.39 -0.02 2.66 16 27 H 0.04 1.84 7.26 -2.39 -0.02 1.82 16 28 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.10 2.64 7.76 -2.39 -0.02 2.62 16 31 H 0.10 2.13 7.83 -2.39 -0.02 2.11 16 Total: -1.00 -73.03 255.98 2.29 -70.74 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.36 Total: 26.09 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 3.29 Total: -2.62 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -1.60 Total: -84.56 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -1.79 Total: -53.29 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -73.03 2.29 -70.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307517127.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.824 kcal (2) G-P(sol) polarization free energy of solvation -73.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds