Wall clock time and date at job start Sun Mar 29 2020 22:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52999 * 110.64210 * 2 1 4 4 C 1.54321 * 110.72496 * 123.14523 * 2 1 3 5 5 N 1.47016 * 107.27553 * 140.55253 * 4 2 1 6 6 C 1.34777 * 125.64839 * 181.02142 * 5 4 2 7 7 O 1.21693 * 120.00018 * 0.02562 * 6 5 4 8 8 C 1.46377 * 120.00307 * 180.27679 * 6 5 4 9 9 H 1.08001 * 119.99387 * 359.73219 * 8 6 5 10 10 C 1.40043 * 120.00458 * 179.72666 * 8 6 5 11 11 N 1.30674 * 120.00000 * 0.02562 * 10 8 6 12 12 Si 1.86796 * 120.00093 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.47059 * 60.00240 * 12 10 8 14 14 H 1.48497 * 109.47169 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47241 * 300.00117 * 12 10 8 16 16 C 1.47422 * 108.70373 * 1.29378 * 5 4 2 17 17 C 1.55132 * 104.72087 * 335.54988 * 16 5 4 18 18 H 1.09005 * 111.18727 * 279.19169 * 17 16 5 19 19 O 1.42895 * 110.90557 * 155.27880 * 17 16 5 20 20 H 1.08995 * 109.47414 * 298.31182 * 1 2 3 21 21 H 1.09005 * 109.47218 * 58.31108 * 1 2 3 22 22 H 1.09006 * 109.47175 * 178.30635 * 1 2 3 23 23 H 1.09010 * 109.47492 * 181.68592 * 3 2 1 24 24 H 1.09002 * 109.47606 * 301.69074 * 3 2 1 25 25 H 1.09005 * 109.46893 * 61.69337 * 3 2 1 26 26 H 1.09004 * 109.87870 * 21.13777 * 4 2 1 27 27 H 1.08999 * 109.88415 * 259.97789 * 4 2 1 28 28 H 0.97004 * 120.00230 * 180.02562 * 11 10 8 29 29 H 1.09001 * 110.36735 * 94.47939 * 16 5 4 30 30 H 1.09000 * 110.36516 * 216.80299 * 16 5 4 31 31 H 0.96699 * 114.00513 * 67.97738 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 6 2.0760 -0.7892 1.2085 5 7 3.2444 -1.5495 0.7415 6 6 3.9922 -2.3811 1.4936 7 8 3.7183 -2.5525 2.6669 8 6 5.1373 -3.0738 0.9008 9 1 5.3803 -2.9219 -0.1405 10 6 5.9178 -3.9335 1.6837 11 7 5.6236 -4.1176 2.9435 12 14 7.3795 -4.8169 0.9272 13 1 8.3509 -3.8174 0.4146 14 1 8.0357 -5.6606 1.9581 15 1 6.9144 -5.6745 -0.1923 16 6 3.4665 -1.2467 -0.6841 17 6 2.0789 -0.7974 -1.2125 18 1 1.4452 -1.6560 -1.4348 19 8 2.2179 0.0444 -2.3588 20 1 -0.3634 0.4874 0.9047 21 1 -0.3634 0.5399 -0.8745 22 1 -0.3634 -1.0273 -0.0304 23 1 3.1587 1.4097 -0.0302 24 1 1.6922 1.9622 -0.8744 25 1 1.7413 1.9436 0.9048 26 1 1.3129 -1.4732 1.5799 27 1 2.3740 -0.0991 1.9979 28 1 6.1644 -4.7128 3.4860 29 1 4.1947 -0.4427 -0.7921 30 1 3.8031 -2.1382 -1.2133 31 1 2.5580 -0.4100 -3.1417 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307526548.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:13 Heat of formation + Delta-G solvation = -92.339232 kcal Electronic energy + Delta-G solvation = -14765.991689 eV Core-core repulsion = 12240.122877 eV Total energy + Delta-G solvation = -2525.868812 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.34546 -36.60456 -34.97078 -32.71270 -32.36383 -27.82486 -27.09991 -27.06927 -24.81634 -22.22742 -19.42235 -18.70052 -17.08019 -16.49875 -15.65846 -14.80588 -14.47474 -14.03427 -13.72981 -13.53921 -12.86609 -12.70613 -12.28545 -11.93239 -11.87279 -11.57414 -11.32835 -11.16548 -10.93314 -10.75747 -10.57423 -10.27325 -10.22270 -9.96554 -9.70328 -8.87069 -7.66560 -7.21833 -6.22275 -4.67393 3.13595 3.18404 3.20329 4.03156 4.24212 4.52522 4.72754 4.82397 5.01942 5.19886 5.45425 5.67120 5.71465 5.73452 5.88266 6.01924 6.10868 6.16367 6.27304 6.32934 6.44715 6.54527 6.57578 6.72511 7.32966 7.40747 7.80730 8.07253 8.37927 8.98851 9.45768 10.54959 10.73673 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046710 B = 0.008698 C = 0.007749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.294028 B = 3218.490971 C = 3612.704356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.071 4.071 3 C -0.123 4.123 4 C 0.125 3.875 5 N -0.642 5.642 6 C 0.571 3.429 7 O -0.575 6.575 8 C -0.539 4.539 9 H 0.069 0.931 10 C 0.086 3.914 11 N -0.768 5.768 12 Si 0.909 3.091 13 H -0.267 1.267 14 H -0.280 1.280 15 H -0.268 1.268 16 C 0.092 3.908 17 C 0.093 3.907 18 H 0.068 0.932 19 O -0.558 6.558 20 H 0.057 0.943 21 H 0.057 0.943 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.270 0.730 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.485 5.889 -9.283 12.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.071 4.071 3 C -0.180 4.180 4 C 0.001 3.999 5 N -0.383 5.383 6 C 0.378 3.622 7 O -0.457 6.457 8 C -0.576 4.576 9 H 0.087 0.913 10 C -0.133 4.133 11 N -0.396 5.396 12 Si 0.734 3.266 13 H -0.192 1.192 14 H -0.205 1.205 15 H -0.193 1.193 16 C -0.033 4.033 17 C 0.034 3.966 18 H 0.086 0.914 19 O -0.362 6.362 20 H 0.076 0.924 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.772 6.086 -7.952 11.559 hybrid contribution 0.983 -0.890 -0.807 1.552 sum -4.789 5.196 -8.759 11.254 Atomic orbital electron populations 1.21761 0.93768 1.01782 1.01745 1.21629 0.95533 0.96163 0.93804 1.21576 1.01273 0.94156 1.00990 1.21674 0.89538 0.93996 0.94662 1.48580 1.31422 1.48833 1.09481 1.18053 0.81975 0.77306 0.84896 1.90615 1.72295 1.66256 1.16536 1.20844 1.11770 1.27554 0.97444 0.91332 1.25735 0.97764 0.95477 0.94370 1.70011 1.34844 1.28619 1.06162 0.86411 0.81299 0.79581 0.79350 1.19232 1.20465 1.19252 1.22565 0.95702 0.99970 0.85068 1.23168 0.96165 0.91931 0.85367 0.91420 1.86463 1.88401 1.39673 1.21702 0.92395 0.92350 0.92595 0.92436 0.92182 0.93104 0.92966 0.92895 0.91952 0.92661 0.91217 0.77838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 8.48 37.15 0.32 -1.43 16 2 C -0.07 -1.12 0.86 -152.68 -0.13 -1.25 16 3 C -0.12 -1.81 7.91 37.16 0.29 -1.52 16 4 C 0.13 2.54 6.04 -3.07 -0.02 2.52 16 5 N -0.64 -15.19 3.32 -172.04 -0.57 -15.76 16 6 C 0.57 16.77 7.78 -12.99 -0.10 16.67 16 7 O -0.57 -19.16 15.35 5.20 0.08 -19.08 16 8 C -0.54 -15.40 8.99 -35.63 -0.32 -15.72 16 9 H 0.07 1.79 6.64 -52.49 -0.35 1.44 16 10 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 11 N -0.77 -23.21 11.83 55.55 0.66 -22.55 16 12 Si 0.91 20.17 29.56 -169.99 -5.02 15.14 16 13 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 14 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 16 C 0.09 1.74 5.95 -2.41 -0.01 1.73 16 17 C 0.09 1.43 3.68 -24.46 -0.09 1.34 16 18 H 0.07 1.00 8.04 -51.93 -0.42 0.59 16 19 O -0.56 -7.36 12.33 -35.23 -0.43 -7.79 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 23 H 0.06 0.93 7.44 -51.92 -0.39 0.54 16 24 H 0.06 0.83 7.73 -51.93 -0.40 0.43 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 1.08 7.82 -51.93 -0.41 0.68 16 27 H 0.05 1.11 7.84 -51.93 -0.41 0.71 16 28 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 29 H 0.06 1.04 7.71 -51.93 -0.40 0.64 16 30 H 0.07 1.30 7.14 -51.93 -0.37 0.93 16 31 H 0.37 3.34 9.12 45.56 0.42 3.76 16 LS Contribution 259.22 15.07 3.91 3.91 Total: -1.00 -34.84 259.22 -5.10 -39.94 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -3.55 Total: 1.53 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -0.16 Total: 4.67 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.09 Total: -38.31 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.35 Total: -26.88 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -34.84 -5.10 -39.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307526548.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.402 kcal (2) G-P(sol) polarization free energy of solvation -34.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds