Wall clock time and date at job start Sun Mar 29 2020 22:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52999 * 110.64210 * 2 1 4 4 C 1.54321 * 110.72496 * 123.14523 * 2 1 3 5 5 N 1.47016 * 107.27553 * 140.55253 * 4 2 1 6 6 C 1.34777 * 125.64839 * 181.02142 * 5 4 2 7 7 O 1.21693 * 120.00018 * 0.02562 * 6 5 4 8 8 C 1.46377 * 120.00307 * 180.27679 * 6 5 4 9 9 H 1.08001 * 119.99387 * 359.73219 * 8 6 5 10 10 C 1.40043 * 120.00458 * 179.72666 * 8 6 5 11 11 N 1.30674 * 120.00000 * 0.02562 * 10 8 6 12 12 Si 1.86796 * 120.00093 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.47059 * 60.00240 * 12 10 8 14 14 H 1.48497 * 109.47169 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47241 * 300.00117 * 12 10 8 16 16 C 1.47422 * 108.70373 * 1.29378 * 5 4 2 17 17 C 1.55132 * 104.72087 * 335.54988 * 16 5 4 18 18 H 1.09005 * 111.18727 * 279.19169 * 17 16 5 19 19 O 1.42895 * 110.90557 * 155.27880 * 17 16 5 20 20 H 1.08995 * 109.47414 * 298.31182 * 1 2 3 21 21 H 1.09005 * 109.47218 * 58.31108 * 1 2 3 22 22 H 1.09006 * 109.47175 * 178.30635 * 1 2 3 23 23 H 1.09010 * 109.47492 * 181.68592 * 3 2 1 24 24 H 1.09002 * 109.47606 * 301.69074 * 3 2 1 25 25 H 1.09005 * 109.46893 * 61.69337 * 3 2 1 26 26 H 1.09004 * 109.87870 * 21.13777 * 4 2 1 27 27 H 1.08999 * 109.88415 * 259.97789 * 4 2 1 28 28 H 0.97004 * 120.00230 * 180.02562 * 11 10 8 29 29 H 1.09001 * 110.36735 * 94.47939 * 16 5 4 30 30 H 1.09000 * 110.36516 * 216.80299 * 16 5 4 31 31 H 0.96699 * 114.00513 * 67.97738 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 6 2.0760 -0.7892 1.2085 5 7 3.2444 -1.5495 0.7415 6 6 3.9922 -2.3811 1.4936 7 8 3.7183 -2.5525 2.6669 8 6 5.1373 -3.0738 0.9008 9 1 5.3803 -2.9219 -0.1405 10 6 5.9178 -3.9335 1.6837 11 7 5.6236 -4.1176 2.9435 12 14 7.3795 -4.8169 0.9272 13 1 8.3509 -3.8174 0.4146 14 1 8.0357 -5.6606 1.9581 15 1 6.9144 -5.6745 -0.1923 16 6 3.4665 -1.2467 -0.6841 17 6 2.0789 -0.7974 -1.2125 18 1 1.4452 -1.6560 -1.4348 19 8 2.2179 0.0444 -2.3588 20 1 -0.3634 0.4874 0.9047 21 1 -0.3634 0.5399 -0.8745 22 1 -0.3634 -1.0273 -0.0304 23 1 3.1587 1.4097 -0.0302 24 1 1.6922 1.9622 -0.8744 25 1 1.7413 1.9436 0.9048 26 1 1.3129 -1.4732 1.5799 27 1 2.3740 -0.0991 1.9979 28 1 6.1644 -4.7128 3.4860 29 1 4.1947 -0.4427 -0.7921 30 1 3.8031 -2.1382 -1.2133 31 1 2.5580 -0.4100 -3.1417 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307526548.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:13 Heat of formation + Delta-G solvation = -119.942666 kcal Electronic energy + Delta-G solvation = -14767.188664 eV Core-core repulsion = 12240.122877 eV Total energy + Delta-G solvation = -2527.065787 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.86537 -38.54386 -36.31627 -34.70407 -34.18212 -29.34379 -29.07717 -28.22475 -26.56762 -23.74680 -21.36457 -20.09586 -18.46179 -18.25356 -17.67819 -16.53536 -16.00840 -15.71600 -15.19408 -14.96708 -14.58776 -14.07643 -13.81922 -13.61624 -13.16060 -13.07301 -12.99900 -12.77804 -12.61597 -12.50093 -12.07620 -11.99497 -11.77393 -11.22941 -10.97548 -10.94804 -9.92532 -9.17721 -8.33993 -6.90516 1.37525 1.41307 1.53537 2.20378 2.39947 2.69074 3.32822 3.47718 3.51253 3.73415 3.95554 4.24702 4.29936 4.44323 4.67454 4.75759 4.79248 4.84980 5.00611 5.03771 5.04054 5.17267 5.27846 5.34156 5.47170 5.55805 5.97843 6.34390 6.81452 6.91677 7.39857 8.39152 8.61917 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046710 B = 0.008698 C = 0.007749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.294028 B = 3218.490971 C = 3612.704356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.065 4.065 3 C -0.118 4.118 4 C 0.120 3.880 5 N -0.650 5.650 6 C 0.550 3.450 7 O -0.632 6.632 8 C -0.564 4.564 9 H 0.088 0.912 10 C 0.026 3.974 11 N -0.822 5.822 12 Si 1.000 3.000 13 H -0.254 1.254 14 H -0.273 1.273 15 H -0.251 1.251 16 C 0.087 3.913 17 C 0.113 3.887 18 H 0.080 0.920 19 O -0.554 6.554 20 H 0.065 0.935 21 H 0.079 0.921 22 H 0.056 0.944 23 H 0.037 0.963 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.276 0.724 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.386 6.195 -11.926 14.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.065 4.065 3 C -0.175 4.175 4 C -0.003 4.003 5 N -0.388 5.388 6 C 0.357 3.643 7 O -0.520 6.520 8 C -0.601 4.601 9 H 0.106 0.894 10 C -0.189 4.189 11 N -0.451 5.451 12 Si 0.819 3.181 13 H -0.178 1.178 14 H -0.197 1.197 15 H -0.175 1.175 16 C -0.037 4.037 17 C 0.053 3.947 18 H 0.098 0.902 19 O -0.362 6.362 20 H 0.084 0.916 21 H 0.097 0.903 22 H 0.075 0.925 23 H 0.056 0.944 24 H 0.096 0.904 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -5.700 6.432 -10.674 13.704 hybrid contribution 0.914 -0.914 -0.004 1.293 sum -4.786 5.518 -10.678 12.937 Atomic orbital electron populations 1.21735 0.91226 1.02371 1.03176 1.21628 0.97402 0.95900 0.91603 1.21540 0.99996 0.93674 1.02268 1.21862 0.88214 0.93590 0.96676 1.48366 1.31410 1.47660 1.11382 1.18487 0.82941 0.78166 0.84711 1.90553 1.73973 1.68504 1.18952 1.21355 1.12056 1.28066 0.98590 0.89353 1.27062 1.01304 0.95906 0.94604 1.70190 1.36845 1.29715 1.08387 0.85039 0.76251 0.78231 0.78600 1.17795 1.19728 1.17481 1.22817 0.98436 1.00110 0.82386 1.22862 0.93528 0.92300 0.86007 0.90240 1.86429 1.88401 1.39516 1.21805 0.91589 0.90258 0.92529 0.94356 0.90369 0.92305 0.94124 0.94664 0.91406 0.92652 0.91099 0.75287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.48 71.98 0.61 -2.39 16 2 C -0.06 -1.93 0.86 -51.00 -0.04 -1.98 16 3 C -0.12 -3.25 7.91 71.98 0.57 -2.68 16 4 C 0.12 4.96 6.04 86.73 0.52 5.49 16 5 N -0.65 -31.40 3.32 -816.43 -2.71 -34.11 16 6 C 0.55 33.52 7.78 86.36 0.67 34.19 16 7 O -0.63 -44.42 15.35 -4.33 -0.07 -44.49 16 8 C -0.56 -32.72 8.99 24.83 0.22 -32.50 16 9 H 0.09 4.58 6.64 -2.91 -0.02 4.56 16 10 C 0.03 1.49 5.50 85.30 0.47 1.96 16 11 N -0.82 -51.24 11.83 21.83 0.26 -50.98 16 12 Si 1.00 41.07 29.56 68.60 2.03 43.10 16 13 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 14 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 15 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 16 C 0.09 3.19 5.95 86.93 0.52 3.71 16 17 C 0.11 3.20 3.68 32.07 0.12 3.32 16 18 H 0.08 2.12 8.04 -2.38 -0.02 2.10 16 19 O -0.55 -12.51 12.33 -148.98 -1.84 -14.34 16 20 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 22 H 0.06 1.33 8.13 -2.38 -0.02 1.31 16 23 H 0.04 1.19 7.44 -2.38 -0.02 1.17 16 24 H 0.08 1.90 7.73 -2.39 -0.02 1.88 16 25 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.04 1.74 7.82 -2.38 -0.02 1.72 16 27 H 0.03 1.55 7.84 -2.39 -0.02 1.53 16 28 H 0.28 15.53 8.29 -92.71 -0.77 14.76 16 29 H 0.06 2.04 7.71 -2.39 -0.02 2.02 16 30 H 0.07 2.57 7.14 -2.39 -0.02 2.55 16 31 H 0.40 5.43 9.12 -74.06 -0.68 4.76 16 Total: -1.00 -78.69 259.22 1.78 -76.91 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.45 Total: 14.79 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 3.66 Total: 9.13 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -2.46 Total: -85.09 kcal Atomic # 8 Polarization: -56.93 SS G_CDS: -1.90 Total: -58.83 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -78.69 1.78 -76.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307526548.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.037 kcal (2) G-P(sol) polarization free energy of solvation -78.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds