Wall clock time and date at job start Sun Mar 29 2020 22:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42902 * 109.46813 * 2 1 4 4 C 1.50705 * 109.46896 * 240.00177 * 2 1 3 5 5 O 1.21291 * 120.00018 * 264.99822 * 4 2 1 6 6 N 1.34773 * 119.99968 * 85.00072 * 4 2 1 7 7 C 1.37097 * 120.00089 * 179.97438 * 6 4 2 8 8 H 1.08004 * 119.99445 * 359.97438 * 7 6 4 9 9 C 1.38944 * 120.00194 * 180.02562 * 7 6 4 10 10 N 1.31415 * 120.00276 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00070 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47203 * 89.99927 * 11 9 7 13 13 H 1.48502 * 109.46991 * 210.00030 * 11 9 7 14 14 H 1.48501 * 109.46936 * 329.99953 * 11 9 7 15 15 C 1.52994 * 109.46785 * 120.00108 * 2 1 3 16 16 C 1.53782 * 113.61734 * 299.99807 * 15 2 1 17 17 C 1.53781 * 87.08260 * 220.02231 * 16 15 2 18 18 C 1.53786 * 87.17350 * 25.39213 * 17 16 15 19 19 H 1.08994 * 109.47196 * 300.00079 * 1 2 3 20 20 H 1.09006 * 109.47251 * 60.00068 * 1 2 3 21 21 H 1.09006 * 109.47175 * 180.02562 * 1 2 3 22 22 H 0.96695 * 113.99336 * 179.97438 * 3 2 1 23 23 H 0.97006 * 119.99774 * 359.97438 * 6 4 2 24 24 H 0.97000 * 120.00450 * 179.97438 * 10 9 7 25 25 H 1.08997 * 112.90864 * 71.25652 * 15 2 1 26 26 H 1.09001 * 113.61250 * 105.47049 * 16 15 2 27 27 H 1.08997 * 113.61225 * 334.56890 * 16 15 2 28 28 H 1.09002 * 113.61445 * 139.98212 * 17 16 15 29 29 H 1.09002 * 113.61408 * 270.79943 * 17 16 15 30 30 H 1.08993 * 113.61491 * 89.15923 * 18 17 16 31 31 H 1.09000 * 113.61138 * 220.06261 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3208 -1.8872 -1.1761 6 7 2.1610 -0.0380 -2.3914 7 6 2.6185 -0.6841 -3.5108 8 1 2.8761 -1.7319 -3.4620 9 6 2.7517 0.0092 -4.7075 10 7 2.4397 1.2844 -4.7664 11 14 3.3743 -0.8714 -6.2328 12 1 2.2242 -1.4423 -6.9789 13 1 4.0977 0.0927 -7.1002 14 1 4.2959 -1.9645 -5.8317 15 6 2.0400 -0.7213 1.2492 16 6 1.5811 -0.0723 2.5657 17 6 2.9922 -0.3573 3.1066 18 6 3.4748 -0.3292 1.6467 19 1 -0.3633 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 2.9703 1.4236 0.0004 23 1 1.9300 0.9031 -2.4350 24 1 2.5330 1.7685 -5.6018 25 1 1.8772 -1.7984 1.2134 26 1 0.7965 -0.6300 3.0772 27 1 1.3553 0.9900 2.4734 28 1 3.3975 0.4503 3.7161 29 1 3.0893 -1.3344 3.5799 30 1 3.7676 0.6627 1.3027 31 1 4.2168 -1.0940 1.4174 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307528154.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:50 Heat of formation + Delta-G solvation = -99.772693 kcal Electronic energy + Delta-G solvation = -14800.409081 eV Core-core repulsion = 12274.217930 eV Total energy + Delta-G solvation = -2526.191151 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.38356 -39.16098 -36.79124 -36.01119 -33.21338 -32.23718 -27.44082 -26.83759 -26.15648 -23.78259 -21.03919 -20.14921 -20.00414 -18.68661 -17.40423 -16.87509 -16.16984 -15.91266 -15.79587 -15.14948 -14.41374 -14.06569 -13.58814 -13.44845 -13.30609 -13.14615 -12.94679 -12.81429 -12.50575 -12.45353 -12.17882 -12.12414 -11.56663 -11.39882 -11.19054 -10.90106 -10.06814 -10.02319 -8.50616 -6.01377 1.34312 1.39011 1.52367 1.93940 2.26063 2.99415 3.14523 3.30963 3.66691 3.72930 3.88330 4.00603 4.25856 4.38893 4.48632 4.75910 4.83060 4.87665 4.90924 4.99058 5.07873 5.13110 5.19940 5.35102 5.39239 5.64896 5.91938 6.45142 6.64673 7.06497 7.51029 8.04411 8.65856 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053691 B = 0.008057 C = 0.007801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.375280 B = 3474.471942 C = 3588.435963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.143 3.857 3 O -0.552 6.552 4 C 0.410 3.590 5 O -0.632 6.632 6 N -0.558 5.558 7 C -0.342 4.342 8 H 0.079 0.921 9 C -0.011 4.011 10 N -0.916 5.916 11 Si 0.995 3.005 12 H -0.270 1.270 13 H -0.268 1.268 14 H -0.272 1.272 15 C -0.127 4.127 16 C -0.118 4.118 17 C -0.124 4.124 18 C -0.148 4.148 19 H 0.097 0.903 20 H 0.051 0.949 21 H 0.070 0.930 22 H 0.381 0.619 23 H 0.398 0.602 24 H 0.280 0.720 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.027 1.402 11.386 11.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.099 3.901 3 O -0.360 6.360 4 C 0.197 3.803 5 O -0.520 6.520 6 N -0.193 5.193 7 C -0.472 4.472 8 H 0.097 0.903 9 C -0.211 4.211 10 N -0.556 5.556 11 Si 0.818 3.182 12 H -0.195 1.195 13 H -0.193 1.193 14 H -0.197 1.197 15 C -0.146 4.146 16 C -0.155 4.155 17 C -0.162 4.162 18 C -0.186 4.186 19 H 0.115 0.885 20 H 0.071 0.929 21 H 0.089 0.911 22 H 0.232 0.768 23 H 0.233 0.767 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.462 0.922 11.253 11.385 hybrid contribution 0.830 -0.186 -1.214 1.482 sum -0.632 0.736 10.039 10.086 Atomic orbital electron populations 1.21665 0.90379 1.02833 1.03681 1.21113 0.96437 0.81713 0.90860 1.86484 1.27718 1.25045 1.96768 1.21645 0.84179 0.88054 0.86451 1.90466 1.57137 1.18297 1.86143 1.41997 1.56513 1.12746 1.08086 1.19747 1.42665 0.96273 0.88507 0.90257 1.26128 0.96860 0.96345 1.01773 1.69701 1.47774 1.08914 1.29181 0.84901 0.78499 0.77873 0.76884 1.19484 1.19263 1.19661 1.23032 0.97976 1.00014 0.93573 1.22880 0.97563 1.01491 0.93556 1.22703 0.96069 1.02683 0.94699 1.23038 0.95683 1.01427 0.98413 0.88465 0.92947 0.91081 0.76810 0.76726 0.91096 0.89847 0.90214 0.89003 0.89675 0.89706 0.89469 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 8.63 71.98 0.62 -3.58 16 2 C 0.14 5.28 0.90 -11.54 -0.01 5.26 16 3 O -0.55 -18.96 11.56 -148.98 -1.72 -20.68 16 4 C 0.41 20.26 6.64 87.66 0.58 20.84 16 5 O -0.63 -35.80 15.53 -3.06 -0.05 -35.85 16 6 N -0.56 -29.88 5.20 -306.99 -1.60 -31.47 16 7 C -0.34 -19.94 9.68 84.04 0.81 -19.13 16 8 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 9 C -0.01 -0.57 5.50 84.92 0.47 -0.11 16 10 N -0.92 -50.47 13.05 21.66 0.28 -50.19 16 11 Si 1.00 43.29 29.55 68.60 2.03 45.32 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 13 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 15 C -0.13 -4.04 2.74 -10.21 -0.03 -4.07 16 16 C -0.12 -2.73 6.58 31.12 0.20 -2.52 16 17 C -0.12 -2.68 8.08 31.12 0.25 -2.43 16 18 C -0.15 -4.22 7.41 31.18 0.23 -3.99 16 19 H 0.10 2.53 7.45 -2.39 -0.02 2.52 16 20 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 21 H 0.07 2.30 8.14 -2.38 -0.02 2.29 16 22 H 0.38 11.87 6.81 -74.06 -0.50 11.37 16 23 H 0.40 20.95 7.34 -92.70 -0.68 20.27 16 24 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 25 H 0.08 3.02 7.62 -2.39 -0.02 3.00 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.09 2.08 7.77 -2.39 -0.02 2.06 16 28 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 2.30 5.91 -2.39 -0.01 2.29 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -66.27 259.57 2.04 -64.24 By element: Atomic # 1 Polarization: 38.39 SS G_CDS: -0.04 Total: 38.35 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 3.13 Total: -9.71 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -1.31 Total: -81.66 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: -1.77 Total: -56.53 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -66.27 2.04 -64.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307528154.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.537 kcal (2) G-P(sol) polarization free energy of solvation -66.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds