Wall clock time and date at job start Sun Mar 29 2020 22:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47103 * 2 1 4 4 C 1.50701 * 109.46986 * 119.99708 * 2 1 3 5 5 O 1.21293 * 119.99625 * 95.00036 * 4 2 1 6 6 N 1.34771 * 120.00418 * 275.00230 * 4 2 1 7 7 C 1.37095 * 120.00240 * 180.02562 * 6 4 2 8 8 H 1.07996 * 120.00016 * 359.97438 * 7 6 4 9 9 C 1.38948 * 120.00253 * 180.02562 * 7 6 4 10 10 N 1.31410 * 120.00102 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00372 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46977 * 59.99778 * 11 9 7 13 13 H 1.48500 * 109.47676 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47324 * 300.00504 * 11 9 7 15 15 C 1.52997 * 109.47155 * 239.99782 * 2 1 3 16 16 C 1.53784 * 113.61270 * 157.49797 * 15 2 1 17 17 C 1.53779 * 87.08045 * 220.02125 * 16 15 2 18 18 C 1.53779 * 87.08402 * 25.43458 * 17 16 15 19 19 H 1.09004 * 109.47525 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47333 * 300.00168 * 1 2 3 21 21 H 1.09000 * 109.47214 * 60.00017 * 1 2 3 22 22 H 0.96701 * 113.99828 * 179.97438 * 3 2 1 23 23 H 0.96998 * 119.99822 * 359.97438 * 6 4 2 24 24 H 0.97005 * 120.00541 * 180.02562 * 10 9 7 25 25 H 1.08994 * 112.91116 * 288.75167 * 15 2 1 26 26 H 1.09002 * 113.61478 * 334.57090 * 16 15 2 27 27 H 1.09004 * 113.61162 * 105.47268 * 16 15 2 28 28 H 1.09006 * 113.61307 * 270.88660 * 17 16 15 29 29 H 1.09007 * 113.61642 * 139.98417 * 17 16 15 30 30 H 1.08997 * 113.61646 * 220.02209 * 18 17 16 31 31 H 1.08998 * 113.69354 * 89.12517 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3207 -1.8872 1.1760 6 7 2.1610 -0.0381 2.3915 7 6 2.6184 -0.6842 3.5107 8 1 2.8753 -1.7320 3.4622 9 6 2.7506 0.0088 4.7078 10 7 2.4376 1.2837 4.7670 11 14 3.3732 -0.8717 6.2330 12 1 4.7348 -1.4055 5.9752 13 1 3.4231 0.0824 7.3698 14 1 2.4574 -1.9921 6.5663 15 6 2.0400 -0.7213 -1.2492 16 6 3.4727 -0.3277 -1.6460 17 6 2.9922 -0.3573 -3.1065 18 6 1.5811 -0.0722 -2.5657 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 2.9703 1.4237 0.0004 23 1 1.9306 0.9032 2.4349 24 1 2.5302 1.7677 5.6026 25 1 1.8771 -1.7984 -1.2134 26 1 3.7639 0.6648 -1.3021 27 1 4.2151 -1.0916 -1.4150 28 1 3.0897 -1.3350 -3.5785 29 1 3.3976 0.4504 -3.7160 30 1 0.7966 -0.6299 -3.0772 31 1 1.3539 0.9897 -2.4730 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307528159.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:52 Heat of formation + Delta-G solvation = -77.112984 kcal Electronic energy + Delta-G solvation = -14800.141331 eV Core-core repulsion = 12274.932779 eV Total energy + Delta-G solvation = -2525.208552 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.88400 -37.47104 -35.33544 -33.95017 -31.15781 -30.75334 -25.88051 -25.18738 -24.93660 -22.20123 -19.41279 -18.79910 -17.97630 -17.08882 -15.93865 -14.89670 -14.81609 -14.27776 -13.94010 -13.37958 -12.94433 -12.50514 -12.19163 -12.02879 -11.81656 -11.56798 -11.49227 -11.10679 -11.05957 -10.85025 -10.44553 -10.27949 -10.22267 -9.98474 -9.62638 -9.48400 -8.12676 -7.97444 -6.42520 -3.83916 3.18087 3.24681 3.28947 3.83974 4.14409 4.57438 4.80348 4.88424 4.92475 5.04722 5.19359 5.31831 5.56232 5.84314 5.91106 5.96038 6.03236 6.05989 6.08996 6.23007 6.30249 6.33960 6.54899 6.58352 6.81461 7.53072 7.90091 8.09573 8.61791 9.15639 9.55338 10.06114 10.74013 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053716 B = 0.008057 C = 0.007801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.138803 B = 3474.370774 C = 3588.357660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.133 3.867 3 O -0.555 6.555 4 C 0.413 3.587 5 O -0.596 6.596 6 N -0.548 5.548 7 C -0.306 4.306 8 H 0.102 0.898 9 C 0.025 3.975 10 N -0.895 5.895 11 Si 0.931 3.069 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.273 1.273 15 C -0.115 4.115 16 C -0.139 4.139 17 C -0.139 4.139 18 C -0.133 4.133 19 H 0.070 0.930 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.374 0.626 23 H 0.398 0.602 24 H 0.273 0.727 25 H 0.105 0.895 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.878 0.720 -10.443 10.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.089 3.911 3 O -0.363 6.363 4 C 0.198 3.802 5 O -0.482 6.482 6 N -0.183 5.183 7 C -0.436 4.436 8 H 0.120 0.880 9 C -0.178 4.178 10 N -0.535 5.535 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.198 1.198 15 C -0.135 4.135 16 C -0.177 4.177 17 C -0.177 4.177 18 C -0.170 4.170 19 H 0.089 0.911 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.224 0.776 23 H 0.233 0.767 24 H 0.083 0.917 25 H 0.123 0.877 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.315 0.221 -10.292 10.378 hybrid contribution 0.789 0.024 0.939 1.227 sum -0.526 0.245 -9.353 9.371 Atomic orbital electron populations 1.21628 0.91886 1.02456 1.02678 1.21179 0.95420 0.81658 0.92840 1.86490 1.26910 1.25915 1.96949 1.20499 0.86008 0.88289 0.85406 1.90501 1.56029 1.16384 1.85285 1.41915 1.55870 1.12790 1.07721 1.19706 1.40412 0.96708 0.86730 0.88017 1.25304 0.97401 0.95639 0.99412 1.69628 1.47703 1.08016 1.28189 0.85923 0.79432 0.78754 0.80134 1.19870 1.20877 1.19846 1.22970 0.96187 1.01193 0.93102 1.22906 0.97094 1.01630 0.96022 1.22750 0.97227 1.01339 0.96352 1.22930 0.96432 1.01409 0.96223 0.91088 0.91671 0.91792 0.77627 0.76707 0.91701 0.87733 0.90257 0.91329 0.90544 0.91828 0.91968 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.63 37.16 0.32 -1.87 16 2 C 0.13 2.49 0.90 -91.77 -0.08 2.41 16 3 O -0.56 -9.87 11.56 -35.23 -0.41 -10.28 16 4 C 0.41 9.98 6.64 -10.99 -0.07 9.91 16 5 O -0.60 -16.31 15.53 5.55 0.09 -16.22 16 6 N -0.55 -14.30 5.20 -10.97 -0.06 -14.35 16 7 C -0.31 -8.66 9.68 -14.93 -0.14 -8.81 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 C 0.02 0.68 5.50 -17.47 -0.10 0.58 16 10 N -0.89 -24.70 13.05 55.50 0.72 -23.98 16 11 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 15 C -0.12 -1.90 2.74 -89.80 -0.25 -2.15 16 16 C -0.14 -2.06 7.40 -25.92 -0.19 -2.26 16 17 C -0.14 -1.71 8.08 -25.92 -0.21 -1.92 16 18 C -0.13 -1.75 6.58 -25.92 -0.17 -1.92 16 19 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 20 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 21 H 0.06 0.93 7.45 -51.93 -0.39 0.54 16 22 H 0.37 6.00 6.81 45.56 0.31 6.31 16 23 H 0.40 10.27 7.33 -40.82 -0.30 9.97 16 24 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.10 1.89 7.62 -51.93 -0.40 1.49 16 26 H 0.08 1.11 5.90 -51.93 -0.31 0.80 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.14 7.77 -51.93 -0.40 0.74 16 LS Contribution 259.54 15.07 3.91 3.91 Total: -1.00 -30.56 259.54 -5.19 -35.75 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -3.53 Total: 15.06 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -0.89 Total: -6.03 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.67 Total: -38.33 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.32 Total: -26.50 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.56 -5.19 -35.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307528159.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.365 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds