Wall clock time and date at job start Sun Mar 29 2020 22:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47103 * 2 1 4 4 C 1.50701 * 109.46986 * 119.99708 * 2 1 3 5 5 O 1.21293 * 119.99625 * 95.00036 * 4 2 1 6 6 N 1.34771 * 120.00418 * 275.00230 * 4 2 1 7 7 C 1.37095 * 120.00240 * 180.02562 * 6 4 2 8 8 H 1.07996 * 120.00016 * 359.97438 * 7 6 4 9 9 C 1.38948 * 120.00253 * 180.02562 * 7 6 4 10 10 N 1.31410 * 120.00102 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00372 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46977 * 59.99778 * 11 9 7 13 13 H 1.48500 * 109.47676 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47324 * 300.00504 * 11 9 7 15 15 C 1.52997 * 109.47155 * 239.99782 * 2 1 3 16 16 C 1.53784 * 113.61270 * 157.49797 * 15 2 1 17 17 C 1.53779 * 87.08045 * 220.02125 * 16 15 2 18 18 C 1.53779 * 87.08402 * 25.43458 * 17 16 15 19 19 H 1.09004 * 109.47525 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47333 * 300.00168 * 1 2 3 21 21 H 1.09000 * 109.47214 * 60.00017 * 1 2 3 22 22 H 0.96701 * 113.99828 * 179.97438 * 3 2 1 23 23 H 0.96998 * 119.99822 * 359.97438 * 6 4 2 24 24 H 0.97005 * 120.00541 * 180.02562 * 10 9 7 25 25 H 1.08994 * 112.91116 * 288.75167 * 15 2 1 26 26 H 1.09002 * 113.61478 * 334.57090 * 16 15 2 27 27 H 1.09004 * 113.61162 * 105.47268 * 16 15 2 28 28 H 1.09006 * 113.61307 * 270.88660 * 17 16 15 29 29 H 1.09007 * 113.61642 * 139.98417 * 17 16 15 30 30 H 1.08997 * 113.61646 * 220.02209 * 18 17 16 31 31 H 1.08998 * 113.69354 * 89.12517 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3207 -1.8872 1.1760 6 7 2.1610 -0.0381 2.3915 7 6 2.6184 -0.6842 3.5107 8 1 2.8753 -1.7320 3.4622 9 6 2.7506 0.0088 4.7078 10 7 2.4376 1.2837 4.7670 11 14 3.3732 -0.8717 6.2330 12 1 4.7348 -1.4055 5.9752 13 1 3.4231 0.0824 7.3698 14 1 2.4574 -1.9921 6.5663 15 6 2.0400 -0.7213 -1.2492 16 6 3.4727 -0.3277 -1.6460 17 6 2.9922 -0.3573 -3.1065 18 6 1.5811 -0.0722 -2.5657 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 2.9703 1.4237 0.0004 23 1 1.9306 0.9032 2.4349 24 1 2.5302 1.7677 5.6026 25 1 1.8771 -1.7984 -1.2134 26 1 3.7639 0.6648 -1.3021 27 1 4.2151 -1.0916 -1.4150 28 1 3.0897 -1.3350 -3.5785 29 1 3.3976 0.4504 -3.7160 30 1 0.7966 -0.6299 -3.0772 31 1 1.3539 0.9897 -2.4730 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307528159.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:52 Heat of formation + Delta-G solvation = -99.552045 kcal Electronic energy + Delta-G solvation = -14801.114362 eV Core-core repulsion = 12274.932779 eV Total energy + Delta-G solvation = -2526.181583 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.39031 -39.16623 -36.79255 -36.01087 -33.21380 -32.23771 -27.44058 -26.84144 -26.15099 -23.78310 -21.03880 -20.14948 -20.00426 -18.68785 -17.40446 -16.87175 -16.17068 -15.91634 -15.79912 -15.14525 -14.41297 -14.06650 -13.58169 -13.44849 -13.30538 -13.14648 -12.94302 -12.81355 -12.51121 -12.46037 -12.17723 -12.13104 -11.56143 -11.39903 -11.18597 -10.90332 -10.06961 -10.02278 -8.50448 -6.01292 1.35962 1.38913 1.50584 1.94086 2.26077 2.99442 3.14602 3.30966 3.66790 3.73286 3.88261 4.00457 4.25872 4.38916 4.48692 4.75929 4.83029 4.87669 4.90909 4.99017 5.07895 5.13147 5.19943 5.34956 5.39310 5.64891 5.91838 6.45147 6.64665 7.06412 7.51052 8.04457 8.65796 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053716 B = 0.008057 C = 0.007801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.138803 B = 3474.370774 C = 3588.357660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.143 3.857 3 O -0.552 6.552 4 C 0.409 3.591 5 O -0.632 6.632 6 N -0.558 5.558 7 C -0.344 4.344 8 H 0.080 0.920 9 C -0.010 4.010 10 N -0.916 5.916 11 Si 0.995 3.005 12 H -0.270 1.270 13 H -0.268 1.268 14 H -0.271 1.271 15 C -0.127 4.127 16 C -0.148 4.148 17 C -0.124 4.124 18 C -0.118 4.118 19 H 0.070 0.930 20 H 0.051 0.949 21 H 0.097 0.903 22 H 0.382 0.618 23 H 0.398 0.602 24 H 0.280 0.720 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.012 1.405 -11.378 11.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.099 3.901 3 O -0.360 6.360 4 C 0.197 3.803 5 O -0.521 6.521 6 N -0.193 5.193 7 C -0.473 4.473 8 H 0.098 0.902 9 C -0.211 4.211 10 N -0.556 5.556 11 Si 0.818 3.182 12 H -0.195 1.195 13 H -0.192 1.192 14 H -0.196 1.196 15 C -0.146 4.146 16 C -0.186 4.186 17 C -0.161 4.161 18 C -0.155 4.155 19 H 0.089 0.911 20 H 0.070 0.930 21 H 0.115 0.885 22 H 0.232 0.768 23 H 0.233 0.767 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.452 0.928 -11.241 11.372 hybrid contribution 0.835 -0.192 1.211 1.484 sum -0.617 0.736 -10.030 10.076 Atomic orbital electron populations 1.21664 0.90387 1.02830 1.03678 1.21111 0.96434 0.81712 0.90866 1.86485 1.27720 1.25050 1.96767 1.21642 0.84201 0.88060 0.86446 1.90465 1.57156 1.18293 1.86141 1.41987 1.56507 1.12733 1.08078 1.19715 1.42781 0.96295 0.88508 0.90237 1.26127 0.96832 0.96354 1.01766 1.69694 1.47650 1.08948 1.29265 0.84964 0.78773 0.77876 0.76565 1.19522 1.19226 1.19599 1.23003 0.98005 1.00018 0.93579 1.23010 0.95700 1.01429 0.98419 1.22705 0.96068 1.02680 0.94693 1.22882 0.97564 1.01496 0.93557 0.91086 0.92951 0.88467 0.76807 0.76728 0.91079 0.89835 0.89461 0.93080 0.89692 0.89659 0.90235 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 8.63 71.98 0.62 -3.58 16 2 C 0.14 5.28 0.90 -11.54 -0.01 5.27 16 3 O -0.55 -18.97 11.56 -148.98 -1.72 -20.69 16 4 C 0.41 20.25 6.64 87.66 0.58 20.83 16 5 O -0.63 -35.80 15.53 -3.07 -0.05 -35.84 16 6 N -0.56 -29.86 5.20 -307.00 -1.60 -31.46 16 7 C -0.34 -20.00 9.68 84.04 0.81 -19.19 16 8 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 9 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 10 N -0.92 -50.49 13.05 21.66 0.28 -50.20 16 11 Si 1.00 43.27 29.55 68.60 2.03 45.30 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 14 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 15 C -0.13 -4.04 2.74 -10.27 -0.03 -4.07 16 16 C -0.15 -4.22 7.40 31.12 0.23 -3.99 16 17 C -0.12 -2.68 8.08 31.12 0.25 -2.42 16 18 C -0.12 -2.73 6.58 31.12 0.20 -2.53 16 19 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 20 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 21 H 0.10 2.54 7.45 -2.39 -0.02 2.52 16 22 H 0.38 11.87 6.81 -74.06 -0.50 11.37 16 23 H 0.40 20.95 7.33 -92.71 -0.68 20.27 16 24 H 0.28 14.37 8.31 -92.70 -0.77 13.60 16 25 H 0.08 3.02 7.62 -2.39 -0.02 3.01 16 26 H 0.09 2.31 5.90 -2.39 -0.01 2.29 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.09 2.08 7.77 -2.39 -0.02 2.06 16 Total: -1.00 -66.21 259.54 2.04 -64.17 By element: Atomic # 1 Polarization: 38.53 SS G_CDS: -0.04 Total: 38.49 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 3.13 Total: -9.77 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -1.31 Total: -81.66 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: -1.77 Total: -56.53 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -66.21 2.04 -64.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307528159.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.378 kcal (2) G-P(sol) polarization free energy of solvation -66.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds