Wall clock time and date at job start Sun Mar 29 2020 22:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.61379 * 2 1 4 4 O 1.21295 * 119.99661 * 239.77269 * 3 2 1 5 5 N 1.34779 * 120.00189 * 59.78329 * 3 2 1 6 6 C 1.37099 * 120.00058 * 179.97438 * 5 3 2 7 7 H 1.08000 * 120.00102 * 0.02562 * 6 5 3 8 8 C 1.38949 * 120.00055 * 179.97438 * 6 5 3 9 9 N 1.31410 * 119.99796 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99892 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47288 * 60.00191 * 10 8 6 12 12 H 1.48508 * 109.46821 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47096 * 299.99918 * 10 8 6 14 14 C 1.53176 * 109.54107 * 239.77905 * 2 1 3 15 15 C 1.53093 * 109.16348 * 183.15264 * 14 2 1 16 16 O 1.42904 * 109.42351 * 57.60111 * 15 14 2 17 17 C 1.42902 * 114.09961 * 298.86177 * 16 15 14 18 18 C 1.53094 * 109.42545 * 61.14161 * 17 16 15 19 19 H 1.08993 * 109.47037 * 180.22600 * 1 2 3 20 20 H 1.09000 * 109.46734 * 300.22349 * 1 2 3 21 21 H 1.08993 * 109.47025 * 60.21871 * 1 2 3 22 22 H 0.96994 * 119.99999 * 359.97438 * 5 3 2 23 23 H 0.97005 * 119.99903 * 179.97438 * 9 8 6 24 24 H 1.09004 * 109.52469 * 63.24696 * 14 2 1 25 25 H 1.08998 * 109.57356 * 303.08802 * 14 2 1 26 26 H 1.09002 * 109.48198 * 177.59219 * 15 14 2 27 27 H 1.08999 * 109.48029 * 297.61833 * 15 14 2 28 28 H 1.09000 * 109.47314 * 301.15801 * 17 16 15 29 29 H 1.09001 * 109.49082 * 181.13246 * 17 16 15 30 30 H 1.08997 * 109.52488 * 182.49772 * 18 17 16 31 31 H 1.08995 * 109.52127 * 62.29758 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0359 1.4195 0.0000 4 8 2.7376 1.8132 -0.9077 5 7 1.7088 2.2515 1.0086 6 6 2.1695 3.5428 1.0088 7 1 2.7941 3.8935 0.2006 8 6 1.8318 4.4007 2.0484 9 7 1.0713 3.9742 3.0315 10 14 2.4589 6.1603 2.0483 11 1 1.9705 6.8598 0.8329 12 1 1.9613 6.8631 3.2582 13 1 3.9439 6.1566 2.0542 14 6 2.0424 -0.7266 -1.2473 15 6 3.5712 -0.7906 -1.1992 16 8 3.9817 -1.4506 -0.0001 17 6 3.5713 -0.7906 1.1991 18 6 2.0425 -0.7267 1.2474 19 1 -0.3633 -1.0276 0.0041 20 1 -0.3633 0.5173 0.8880 21 1 -0.3633 0.5104 -0.8919 22 1 1.1475 1.9367 1.7343 23 1 0.8359 4.5730 3.7575 24 1 1.7284 -0.1845 -2.1394 25 1 1.6362 -1.7377 -1.2736 26 1 3.9393 -1.3441 -2.0631 27 1 3.9781 0.2205 -1.2150 28 1 3.9781 0.2205 1.2148 29 1 3.9394 -1.3440 2.0630 30 1 1.7285 -0.1846 2.1393 31 1 1.6362 -1.7378 1.2725 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307561790.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:54 Heat of formation + Delta-G solvation = -100.528141 kcal Electronic energy + Delta-G solvation = -15104.129500 eV Core-core repulsion = 12577.905590 eV Total energy + Delta-G solvation = -2526.223910 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.92991 -37.21982 -34.21335 -33.96574 -31.34247 -30.41075 -27.97507 -25.21402 -23.17262 -22.81654 -21.18961 -18.40082 -17.72666 -15.88694 -15.49469 -15.40327 -14.64767 -14.39982 -14.21719 -13.72067 -13.17235 -13.14982 -12.20344 -11.92674 -11.63895 -11.60156 -11.52988 -11.27476 -11.08282 -10.82657 -10.47018 -10.28345 -10.02377 -9.93672 -9.50516 -9.05435 -8.20012 -7.98233 -6.45090 -3.85943 3.17307 3.23569 3.27869 3.85941 4.14303 4.33895 4.82983 5.03901 5.16236 5.34391 5.40656 5.48380 5.72521 5.88637 5.93815 6.01410 6.07508 6.09722 6.16726 6.26325 6.37339 6.44814 6.55833 6.59041 6.76017 7.51755 7.66228 8.02585 8.57436 9.14003 9.51514 10.02577 10.72271 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043007 B = 0.009358 C = 0.009075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.896028 B = 2991.262139 C = 3084.822531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.077 4.077 3 C 0.450 3.550 4 O -0.593 6.593 5 N -0.556 5.556 6 C -0.303 4.303 7 H 0.102 0.898 8 C 0.024 3.976 9 N -0.900 5.900 10 Si 0.930 3.070 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.273 1.273 14 C -0.120 4.120 15 C 0.050 3.950 16 O -0.392 6.392 17 C 0.061 3.939 18 C -0.140 4.140 19 H 0.056 0.944 20 H 0.061 0.939 21 H 0.057 0.943 22 H 0.392 0.608 23 H 0.273 0.727 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.532 -8.038 -1.966 8.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.081 4.081 3 C 0.236 3.764 4 O -0.479 6.479 5 N -0.191 5.191 6 C -0.432 4.432 7 H 0.120 0.880 8 C -0.178 4.178 9 N -0.541 5.541 10 Si 0.757 3.243 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.199 1.199 14 C -0.158 4.158 15 C -0.026 4.026 16 O -0.311 6.311 17 C -0.016 4.016 18 C -0.178 4.178 19 H 0.075 0.925 20 H 0.080 0.920 21 H 0.076 0.924 22 H 0.226 0.774 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.036 -7.815 -2.380 8.170 hybrid contribution -0.382 1.004 0.566 1.214 sum -0.418 -6.811 -1.814 7.061 Atomic orbital electron populations 1.21808 0.93454 1.01473 1.02601 1.20730 0.96442 0.94634 0.96249 1.19695 0.85579 0.86621 0.84525 1.90448 1.42334 1.77344 1.37803 1.41885 1.45202 1.10894 1.21095 1.19679 1.29140 0.86485 1.07935 0.87989 1.25258 0.96792 1.00397 0.95317 1.69601 1.36326 1.37236 1.10923 0.85933 0.79161 0.81641 0.77592 1.19897 1.20936 1.19877 1.21895 0.97037 0.99255 0.97645 1.22831 0.94037 0.99461 0.86310 1.87793 1.77471 1.51717 1.14142 1.22519 0.93709 0.98052 0.87305 1.22231 0.97080 1.00751 0.97762 0.92527 0.91983 0.92354 0.77390 0.91761 0.90671 0.91896 0.90104 0.89876 0.92565 0.89403 0.90478 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.39 37.16 0.31 -1.86 16 2 C -0.08 -1.40 0.63 -155.47 -0.10 -1.50 16 3 C 0.45 10.50 5.11 -10.99 -0.06 10.44 16 4 O -0.59 -15.65 13.41 5.54 0.07 -15.58 16 5 N -0.56 -13.93 5.06 -10.96 -0.06 -13.98 16 6 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 7 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 8 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 9 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16 10 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 14 C -0.12 -2.04 4.56 -26.59 -0.12 -2.16 16 15 C 0.05 0.89 6.55 37.21 0.24 1.13 16 16 O -0.39 -7.12 10.77 -35.23 -0.38 -7.50 16 17 C 0.06 1.06 6.62 37.21 0.25 1.31 16 18 C -0.14 -2.31 4.86 -26.59 -0.13 -2.44 16 19 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 20 H 0.06 1.01 7.56 -51.93 -0.39 0.62 16 21 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 22 H 0.39 9.50 6.73 -40.82 -0.27 9.22 16 23 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.07 1.30 8.03 -51.93 -0.42 0.89 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.08 1.74 5.80 -51.93 -0.30 1.44 16 28 H 0.06 1.13 7.38 -51.93 -0.38 0.75 16 29 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.28 7.52 -51.93 -0.39 0.89 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 252.39 15.07 3.80 3.80 Total: -1.00 -29.62 252.39 -4.91 -34.52 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -4.21 Total: 9.34 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 0.16 Total: -3.03 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.67 Total: -37.45 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.30 Total: -23.08 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.62 -4.91 -34.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307561790.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.006 kcal (2) G-P(sol) polarization free energy of solvation -29.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds