Wall clock time and date at job start Sun Mar 29 2020 22:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.61379 * 2 1 4 4 O 1.21295 * 119.99661 * 239.77269 * 3 2 1 5 5 N 1.34779 * 120.00189 * 59.78329 * 3 2 1 6 6 C 1.37099 * 120.00058 * 179.97438 * 5 3 2 7 7 H 1.08000 * 120.00102 * 0.02562 * 6 5 3 8 8 C 1.38949 * 120.00055 * 179.97438 * 6 5 3 9 9 N 1.31410 * 119.99796 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99892 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47288 * 60.00191 * 10 8 6 12 12 H 1.48508 * 109.46821 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47096 * 299.99918 * 10 8 6 14 14 C 1.53176 * 109.54107 * 239.77905 * 2 1 3 15 15 C 1.53093 * 109.16348 * 183.15264 * 14 2 1 16 16 O 1.42904 * 109.42351 * 57.60111 * 15 14 2 17 17 C 1.42902 * 114.09961 * 298.86177 * 16 15 14 18 18 C 1.53094 * 109.42545 * 61.14161 * 17 16 15 19 19 H 1.08993 * 109.47037 * 180.22600 * 1 2 3 20 20 H 1.09000 * 109.46734 * 300.22349 * 1 2 3 21 21 H 1.08993 * 109.47025 * 60.21871 * 1 2 3 22 22 H 0.96994 * 119.99999 * 359.97438 * 5 3 2 23 23 H 0.97005 * 119.99903 * 179.97438 * 9 8 6 24 24 H 1.09004 * 109.52469 * 63.24696 * 14 2 1 25 25 H 1.08998 * 109.57356 * 303.08802 * 14 2 1 26 26 H 1.09002 * 109.48198 * 177.59219 * 15 14 2 27 27 H 1.08999 * 109.48029 * 297.61833 * 15 14 2 28 28 H 1.09000 * 109.47314 * 301.15801 * 17 16 15 29 29 H 1.09001 * 109.49082 * 181.13246 * 17 16 15 30 30 H 1.08997 * 109.52488 * 182.49772 * 18 17 16 31 31 H 1.08995 * 109.52127 * 62.29758 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0359 1.4195 0.0000 4 8 2.7376 1.8132 -0.9077 5 7 1.7088 2.2515 1.0086 6 6 2.1695 3.5428 1.0088 7 1 2.7941 3.8935 0.2006 8 6 1.8318 4.4007 2.0484 9 7 1.0713 3.9742 3.0315 10 14 2.4589 6.1603 2.0483 11 1 1.9705 6.8598 0.8329 12 1 1.9613 6.8631 3.2582 13 1 3.9439 6.1566 2.0542 14 6 2.0424 -0.7266 -1.2473 15 6 3.5712 -0.7906 -1.1992 16 8 3.9817 -1.4506 -0.0001 17 6 3.5713 -0.7906 1.1991 18 6 2.0425 -0.7267 1.2474 19 1 -0.3633 -1.0276 0.0041 20 1 -0.3633 0.5173 0.8880 21 1 -0.3633 0.5104 -0.8919 22 1 1.1475 1.9367 1.7343 23 1 0.8359 4.5730 3.7575 24 1 1.7284 -0.1845 -2.1394 25 1 1.6362 -1.7377 -1.2736 26 1 3.9393 -1.3441 -2.0631 27 1 3.9781 0.2205 -1.2150 28 1 3.9781 0.2205 1.2148 29 1 3.9394 -1.3440 2.0630 30 1 1.7285 -0.1846 2.1393 31 1 1.6362 -1.7378 1.2725 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307561790.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:54 Heat of formation + Delta-G solvation = -121.362564 kcal Electronic energy + Delta-G solvation = -15105.032948 eV Core-core repulsion = 12577.905590 eV Total energy + Delta-G solvation = -2527.127358 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.52171 -38.90705 -36.05521 -35.63726 -33.26426 -31.87503 -29.32744 -27.19048 -24.55197 -24.32971 -22.79761 -20.29564 -19.57230 -17.49865 -17.07295 -16.90055 -16.45857 -15.94491 -15.88642 -15.32099 -14.91686 -14.75712 -13.59217 -13.51121 -13.32119 -12.99223 -12.95305 -12.85245 -12.82652 -12.45684 -12.19350 -12.14614 -11.57639 -11.42232 -11.27724 -10.52402 -10.06258 -9.96380 -8.48461 -5.97089 1.37022 1.39288 1.49875 2.03373 2.27641 2.95933 3.15974 3.18106 3.68383 3.87928 3.92954 4.11990 4.36132 4.38405 4.58760 4.68760 4.71218 4.76695 4.82304 4.90734 5.01097 5.11259 5.17828 5.25272 5.30171 5.41320 5.98747 6.24979 6.57499 7.10412 7.54904 8.10040 8.68462 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043007 B = 0.009358 C = 0.009075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.896028 B = 2991.262139 C = 3084.822531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 C 0.448 3.552 4 O -0.629 6.629 5 N -0.565 5.565 6 C -0.337 4.337 7 H 0.077 0.923 8 C -0.010 4.010 9 N -0.917 5.917 10 Si 0.990 3.010 11 H -0.272 1.272 12 H -0.269 1.269 13 H -0.273 1.273 14 C -0.117 4.117 15 C 0.048 3.952 16 O -0.393 6.393 17 C 0.058 3.942 18 C -0.134 4.134 19 H 0.096 0.904 20 H 0.053 0.947 21 H 0.050 0.950 22 H 0.395 0.605 23 H 0.278 0.722 24 H 0.066 0.934 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.042 0.958 28 H 0.016 0.984 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.290 -9.416 -1.594 9.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.079 4.079 3 C 0.236 3.764 4 O -0.517 6.517 5 N -0.201 5.201 6 C -0.467 4.467 7 H 0.095 0.905 8 C -0.210 4.210 9 N -0.558 5.558 10 Si 0.813 3.187 11 H -0.198 1.198 12 H -0.193 1.193 13 H -0.198 1.198 14 C -0.155 4.155 15 C -0.028 4.028 16 O -0.312 6.312 17 C -0.019 4.019 18 C -0.172 4.172 19 H 0.114 0.886 20 H 0.073 0.927 21 H 0.069 0.931 22 H 0.229 0.771 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.118 0.882 26 H 0.127 0.873 27 H 0.060 0.940 28 H 0.034 0.966 29 H 0.136 0.864 30 H 0.092 0.908 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.806 -9.209 -1.999 9.458 hybrid contribution -0.109 1.393 0.413 1.457 sum -0.915 -7.817 -1.587 8.028 Atomic orbital electron populations 1.21800 0.91325 1.03839 1.01914 1.20797 0.98078 0.90942 0.98096 1.20757 0.84055 0.88552 0.83065 1.90429 1.43600 1.78715 1.38977 1.41915 1.45757 1.10544 1.21854 1.19635 1.30470 0.88291 1.08262 0.90489 1.25996 0.96600 1.03821 0.94568 1.69658 1.36503 1.38502 1.11135 0.85038 0.78516 0.77091 0.78009 1.19752 1.19350 1.19825 1.21922 0.96230 1.00845 0.96490 1.22821 0.94886 0.97785 0.87309 1.87795 1.77784 1.51341 1.14271 1.22607 0.94600 0.96452 0.88196 1.22234 0.96161 1.02344 0.96484 0.88550 0.92741 0.93095 0.77072 0.91236 0.91502 0.88208 0.87308 0.93990 0.96580 0.86425 0.90830 0.87387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 8.39 71.98 0.60 -3.27 16 2 C -0.08 -2.65 0.63 -52.81 -0.03 -2.68 16 3 C 0.45 21.33 5.11 87.66 0.45 21.78 16 4 O -0.63 -34.55 13.41 -3.08 -0.04 -34.59 16 5 N -0.57 -29.07 5.06 -306.98 -1.55 -30.62 16 6 C -0.34 -19.21 9.68 84.04 0.81 -18.40 16 7 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 8 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 9 N -0.92 -49.29 13.05 21.66 0.28 -49.00 16 10 Si 0.99 43.03 29.55 68.60 2.03 45.05 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 13 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 14 C -0.12 -3.71 4.56 30.68 0.14 -3.57 16 15 C 0.05 1.67 6.55 72.01 0.47 2.14 16 16 O -0.39 -13.57 10.77 -148.98 -1.60 -15.17 16 17 C 0.06 1.95 6.62 72.01 0.48 2.43 16 18 C -0.13 -4.11 4.86 30.69 0.15 -3.96 16 19 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 20 H 0.05 1.68 7.56 -2.39 -0.02 1.67 16 21 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.39 19.46 6.73 -92.71 -0.62 18.84 16 23 H 0.28 14.01 8.31 -92.70 -0.77 13.24 16 24 H 0.07 2.23 8.03 -2.39 -0.02 2.21 16 25 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 27 H 0.04 1.81 5.80 -2.39 -0.01 1.79 16 28 H 0.02 0.66 7.38 -2.39 -0.02 0.64 16 29 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.07 2.32 7.52 -2.39 -0.02 2.30 16 31 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -65.16 252.39 3.15 -62.01 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.50 Total: 27.90 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 3.54 Total: -5.58 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -1.27 Total: -79.62 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -1.65 Total: -49.76 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -65.16 3.15 -62.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307561790.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.352 kcal (2) G-P(sol) polarization free energy of solvation -65.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds