Wall clock time and date at job start Sun Mar 29 2020 22:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86795 * 120.00016 * 2 1 4 4 H 1.48498 * 109.47225 * 270.00114 * 3 2 1 5 5 H 1.48500 * 109.47112 * 30.00321 * 3 2 1 6 6 H 1.48506 * 109.47172 * 149.99931 * 3 2 1 7 7 C 1.38945 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00413 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00280 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00301 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99637 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99908 * 180.02562 * 10 9 7 13 13 C 1.53003 * 109.46860 * 180.02562 * 12 10 9 14 14 O 1.42903 * 110.42936 * 300.69961 * 13 12 10 15 15 C 1.54884 * 110.60201 * 63.31694 * 13 12 10 16 16 C 1.54891 * 102.75037 * 156.67771 * 15 13 12 17 17 C 1.54269 * 104.19339 * 322.05787 * 16 15 13 18 18 C 1.53880 * 106.59932 * 23.61222 * 17 16 15 19 19 H 0.97003 * 119.99669 * 359.97438 * 1 2 3 20 20 H 0.97006 * 119.99494 * 0.02562 * 9 7 2 21 21 H 1.08997 * 109.46840 * 60.00033 * 12 10 9 22 22 H 1.08994 * 109.47030 * 299.99930 * 12 10 9 23 23 H 0.96700 * 114.00311 * 57.46311 * 14 13 12 24 24 H 1.09001 * 110.75738 * 274.99492 * 15 13 12 25 25 H 1.08996 * 110.75739 * 38.36218 * 15 13 12 26 26 H 1.08996 * 110.48563 * 203.38344 * 16 15 13 27 27 H 1.09000 * 110.48327 * 80.73607 * 16 15 13 28 28 H 1.08999 * 110.03179 * 264.32926 * 17 16 15 29 29 H 1.08998 * 110.03159 * 142.89678 * 17 16 15 30 30 H 1.08997 * 110.02784 * 240.71715 * 18 17 16 31 31 H 1.08994 * 110.03400 * 119.28046 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4401 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2437 -4.8630 -0.0011 13 6 2.2380 -6.0259 -0.0004 14 8 3.0826 -5.9608 -1.1512 15 6 3.0859 -6.0171 1.2957 16 6 3.5443 -7.4919 1.4144 17 6 2.3215 -8.3069 0.9450 18 6 1.4909 -7.3749 0.0454 19 1 -0.4850 0.8401 0.0004 20 1 0.3534 -2.3906 -0.0005 21 1 0.6174 -4.9204 -0.8914 22 1 0.6167 -4.9209 0.8886 23 1 3.5767 -5.1333 -1.2301 24 1 3.9440 -5.3531 1.1914 25 1 2.4773 -5.7315 2.1536 26 1 3.7893 -7.7331 2.4487 27 1 4.3995 -7.6789 0.7651 28 1 1.7296 -8.6209 1.8048 29 1 2.6490 -9.1785 0.3783 30 1 0.4961 -7.2365 0.4687 31 1 1.4154 -7.7940 -0.9579 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307566719.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:01 Heat of formation + Delta-G solvation = -112.142241 kcal Electronic energy + Delta-G solvation = -14569.417223 eV Core-core repulsion = 12042.689688 eV Total energy + Delta-G solvation = -2526.727535 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.38408 -37.38929 -34.34101 -33.79677 -31.41276 -30.19255 -28.44073 -25.95413 -24.11309 -20.50308 -19.69293 -19.20118 -17.92008 -16.06501 -15.85404 -15.12990 -14.86911 -14.43087 -14.23741 -13.82089 -13.36837 -12.60443 -12.19533 -11.90834 -11.61494 -11.43170 -11.18284 -11.10957 -10.86862 -10.66264 -10.43280 -10.37080 -10.26194 -10.14474 -9.55627 -9.28237 -8.41267 -8.03855 -6.47487 -3.88869 3.14146 3.23573 3.29143 3.83249 4.12849 4.61211 4.78563 4.93002 5.17189 5.21364 5.23132 5.51048 5.70908 5.79119 5.86306 5.89707 6.06513 6.09575 6.13925 6.22173 6.32308 6.46996 6.51888 6.59856 6.83218 7.49823 7.98794 8.35030 8.56355 9.11105 9.47479 9.97577 10.69831 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.066625 B = 0.006915 C = 0.006676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.164467 B = 4048.369364 C = 4193.342983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.105 0.895 9 N -0.556 5.556 10 C 0.440 3.560 11 O -0.600 6.600 12 C -0.158 4.158 13 C 0.154 3.846 14 O -0.567 6.567 15 C -0.142 4.142 16 C -0.122 4.122 17 C -0.121 4.121 18 C -0.114 4.114 19 H 0.273 0.727 20 H 0.393 0.607 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.390 0.610 24 H 0.087 0.913 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.460 -10.559 1.848 10.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.433 4.433 8 H 0.122 0.878 9 N -0.191 5.191 10 C 0.227 3.773 11 O -0.488 6.488 12 C -0.199 4.199 13 C 0.113 3.887 14 O -0.379 6.379 15 C -0.180 4.180 16 C -0.159 4.159 17 C -0.158 4.158 18 C -0.152 4.152 19 H 0.082 0.918 20 H 0.227 0.773 21 H 0.101 0.899 22 H 0.102 0.898 23 H 0.244 0.756 24 H 0.105 0.895 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.873 -10.952 1.751 11.125 hybrid contribution -0.167 1.511 0.128 1.526 sum 0.706 -9.441 1.879 9.652 Atomic orbital electron populations 1.69620 1.06003 1.28320 1.50050 1.25302 0.95642 0.99877 0.97051 0.85839 0.79226 0.80667 0.78452 1.20320 1.20879 1.19374 1.19745 0.93449 0.82284 1.47834 0.87769 1.41933 1.09323 1.04769 1.63028 1.19885 0.88225 0.84912 0.84245 1.90375 1.13973 1.87098 1.57340 1.22246 0.99606 0.94701 1.03364 1.21470 0.88952 0.92248 0.86052 1.86259 1.61428 1.45370 1.44863 1.23122 1.01261 0.96213 0.97399 1.22326 0.97795 0.95630 1.00185 1.22095 0.96870 0.98105 0.98747 1.22182 0.98274 0.94212 1.00539 0.91752 0.77321 0.89904 0.89780 0.75606 0.89455 0.91644 0.92335 0.91651 0.92191 0.92178 0.90867 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -13.95 5.29 -10.96 -0.06 -14.01 16 10 C 0.44 10.11 7.35 -10.98 -0.08 10.03 16 11 O -0.60 -15.05 11.93 -12.66 -0.15 -15.20 16 12 C -0.16 -2.85 4.87 -27.88 -0.14 -2.98 16 13 C 0.15 2.63 0.83 -88.96 -0.07 2.56 16 14 O -0.57 -10.84 13.03 -53.44 -0.70 -11.54 16 15 C -0.14 -2.37 5.24 -24.74 -0.13 -2.50 16 16 C -0.12 -1.69 6.81 -25.07 -0.17 -1.86 16 17 C -0.12 -1.50 6.80 -25.61 -0.17 -1.68 16 18 C -0.11 -1.59 6.12 -25.61 -0.16 -1.75 16 19 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 20 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 21 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 22 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 23 H 0.39 7.90 6.55 45.56 0.30 8.20 16 24 H 0.09 1.67 6.88 -51.93 -0.36 1.32 16 25 H 0.06 1.06 8.06 -51.93 -0.42 0.64 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.89 7.83 -51.93 -0.41 0.49 16 31 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 LS Contribution 256.98 15.07 3.87 3.87 Total: -1.00 -28.93 256.98 -6.17 -35.09 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -3.67 Total: 15.74 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -1.16 Total: -6.15 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.67 Total: -37.62 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.85 Total: -26.74 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.93 -6.17 -35.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307566719.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.048 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds