Wall clock time and date at job start Sun Mar 29 2020 22:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86795 * 120.00016 * 2 1 4 4 H 1.48498 * 109.47225 * 270.00114 * 3 2 1 5 5 H 1.48500 * 109.47112 * 30.00321 * 3 2 1 6 6 H 1.48506 * 109.47172 * 149.99931 * 3 2 1 7 7 C 1.38945 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00413 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00280 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00301 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99637 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99908 * 180.02562 * 10 9 7 13 13 C 1.53003 * 109.46860 * 180.02562 * 12 10 9 14 14 O 1.42903 * 110.42936 * 300.69961 * 13 12 10 15 15 C 1.54884 * 110.60201 * 63.31694 * 13 12 10 16 16 C 1.54891 * 102.75037 * 156.67771 * 15 13 12 17 17 C 1.54269 * 104.19339 * 322.05787 * 16 15 13 18 18 C 1.53880 * 106.59932 * 23.61222 * 17 16 15 19 19 H 0.97003 * 119.99669 * 359.97438 * 1 2 3 20 20 H 0.97006 * 119.99494 * 0.02562 * 9 7 2 21 21 H 1.08997 * 109.46840 * 60.00033 * 12 10 9 22 22 H 1.08994 * 109.47030 * 299.99930 * 12 10 9 23 23 H 0.96700 * 114.00311 * 57.46311 * 14 13 12 24 24 H 1.09001 * 110.75738 * 274.99492 * 15 13 12 25 25 H 1.08996 * 110.75739 * 38.36218 * 15 13 12 26 26 H 1.08996 * 110.48563 * 203.38344 * 16 15 13 27 27 H 1.09000 * 110.48327 * 80.73607 * 16 15 13 28 28 H 1.08999 * 110.03179 * 264.32926 * 17 16 15 29 29 H 1.08998 * 110.03159 * 142.89678 * 17 16 15 30 30 H 1.08997 * 110.02784 * 240.71715 * 18 17 16 31 31 H 1.08994 * 110.03400 * 119.28046 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4401 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2437 -4.8630 -0.0011 13 6 2.2380 -6.0259 -0.0004 14 8 3.0826 -5.9608 -1.1512 15 6 3.0859 -6.0171 1.2957 16 6 3.5443 -7.4919 1.4144 17 6 2.3215 -8.3069 0.9450 18 6 1.4909 -7.3749 0.0454 19 1 -0.4850 0.8401 0.0004 20 1 0.3534 -2.3906 -0.0005 21 1 0.6174 -4.9204 -0.8914 22 1 0.6167 -4.9209 0.8886 23 1 3.5767 -5.1333 -1.2301 24 1 3.9440 -5.3531 1.1914 25 1 2.4773 -5.7315 2.1536 26 1 3.7893 -7.7331 2.4487 27 1 4.3995 -7.6789 0.7651 28 1 1.7296 -8.6209 1.8048 29 1 2.6490 -9.1785 0.3783 30 1 0.4961 -7.2365 0.4687 31 1 1.4154 -7.7940 -0.9579 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307566719.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:01 Heat of formation + Delta-G solvation = -132.063940 kcal Electronic energy + Delta-G solvation = -14570.281093 eV Core-core repulsion = 12042.689688 eV Total energy + Delta-G solvation = -2527.591404 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.94230 -39.01089 -36.05771 -35.40445 -33.37179 -31.70176 -29.60154 -27.60072 -25.79997 -21.78503 -21.18795 -20.71221 -19.88945 -17.74632 -17.34568 -16.66790 -16.33184 -16.10825 -15.87404 -15.51615 -14.71437 -14.13058 -13.75954 -13.52846 -13.31038 -12.96828 -12.73496 -12.44102 -12.32096 -12.14365 -12.06289 -11.90912 -11.60702 -11.46266 -11.25813 -10.69189 -10.27768 -10.04142 -8.49300 -5.98385 1.36435 1.40982 1.53534 2.00636 2.28159 3.13787 3.18558 3.37322 3.71542 3.85410 3.95419 4.32836 4.39494 4.46945 4.59384 4.68364 4.78234 4.87914 4.97250 5.10277 5.11817 5.17235 5.29854 5.38791 5.46151 5.56383 5.96903 6.53133 6.83368 7.10057 7.52160 8.06257 8.67996 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.066625 B = 0.006915 C = 0.006676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.164467 B = 4048.369364 C = 4193.342983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.083 0.917 9 N -0.570 5.570 10 C 0.440 3.560 11 O -0.624 6.624 12 C -0.150 4.150 13 C 0.142 3.858 14 O -0.577 6.577 15 C -0.145 4.145 16 C -0.118 4.118 17 C -0.116 4.116 18 C -0.111 4.111 19 H 0.278 0.722 20 H 0.396 0.604 21 H 0.097 0.903 22 H 0.110 0.890 23 H 0.381 0.619 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.334 -11.531 2.336 11.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.101 0.899 9 N -0.205 5.205 10 C 0.228 3.772 11 O -0.513 6.513 12 C -0.190 4.190 13 C 0.101 3.899 14 O -0.387 6.387 15 C -0.183 4.183 16 C -0.156 4.156 17 C -0.153 4.153 18 C -0.148 4.148 19 H 0.087 0.913 20 H 0.230 0.770 21 H 0.115 0.885 22 H 0.128 0.872 23 H 0.233 0.767 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.064 -11.952 2.239 12.160 hybrid contribution 0.109 1.758 -0.019 1.761 sum 0.173 -10.194 2.220 10.434 Atomic orbital electron populations 1.69681 1.06918 1.29373 1.50150 1.26074 0.96531 1.02557 0.96162 0.84913 0.77894 0.76805 0.78646 1.19662 1.19596 1.19664 1.19726 0.92854 0.84000 1.49927 0.89936 1.42009 1.09367 1.04885 1.64269 1.20838 0.88249 0.86044 0.82019 1.90371 1.15490 1.87775 1.57638 1.22280 0.99695 0.91811 1.05223 1.21829 0.88806 0.93754 0.85484 1.86261 1.61728 1.44670 1.46068 1.23083 1.00076 0.97654 0.97491 1.22311 0.98265 0.93721 1.01297 1.22109 0.96032 0.97737 0.99469 1.22234 0.99165 0.92172 1.01274 0.91258 0.77046 0.88497 0.87189 0.76722 0.92941 0.91175 0.90467 0.92659 0.89788 0.91031 0.88539 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.61 13.05 21.66 0.28 -49.33 16 2 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 3 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.34 -18.84 9.68 84.04 0.81 -18.03 16 8 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 9 N -0.57 -28.98 5.29 -306.98 -1.62 -30.61 16 10 C 0.44 20.37 7.35 87.66 0.64 21.02 16 11 O -0.62 -32.21 11.93 14.35 0.17 -32.04 16 12 C -0.15 -5.17 4.87 29.85 0.15 -5.02 16 13 C 0.14 4.66 0.83 -9.72 -0.01 4.65 16 14 O -0.58 -21.98 13.03 -131.57 -1.71 -23.70 16 15 C -0.15 -4.73 5.24 31.88 0.17 -4.56 16 16 C -0.12 -3.04 6.81 31.67 0.22 -2.83 16 17 C -0.12 -2.48 6.80 31.32 0.21 -2.27 16 18 C -0.11 -2.74 6.12 31.32 0.19 -2.55 16 19 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 20 H 0.40 19.34 7.90 -92.70 -0.73 18.60 16 21 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 22 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 23 H 0.38 15.89 6.55 -74.06 -0.48 15.41 16 24 H 0.05 2.06 6.88 -2.39 -0.02 2.04 16 25 H 0.07 2.17 8.06 -2.39 -0.02 2.16 16 26 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.10 1.94 7.83 -2.39 -0.02 1.92 16 31 H 0.07 1.80 8.07 -2.39 -0.02 1.78 16 Total: -1.00 -62.37 256.98 1.92 -60.45 By element: Atomic # 1 Polarization: 40.45 SS G_CDS: -0.08 Total: 40.37 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 2.85 Total: -9.83 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -1.34 Total: -79.94 kcal Atomic # 8 Polarization: -54.19 SS G_CDS: -1.54 Total: -55.74 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -62.37 1.92 -60.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307566719.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.614 kcal (2) G-P(sol) polarization free energy of solvation -62.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds