Wall clock time and date at job start Sun Mar 29 2020 22:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86795 * 120.00106 * 2 1 4 4 H 1.48501 * 109.47213 * 240.00111 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99739 * 3 2 1 7 7 C 1.40047 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99523 * 179.97438 * 7 2 1 9 9 C 1.46368 * 120.00322 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99926 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00188 * 180.27118 * 9 7 2 12 12 C 1.46500 * 120.00431 * 179.72417 * 11 9 7 13 13 C 1.52999 * 109.47528 * 180.02562 * 12 11 9 14 14 O 1.42902 * 110.01350 * 64.29864 * 13 12 11 15 15 C 1.54267 * 110.03274 * 302.90903 * 13 12 11 16 16 C 1.54959 * 104.15706 * 217.13553 * 15 13 12 17 17 C 1.54889 * 102.77982 * 37.88834 * 16 15 13 18 18 C 1.53870 * 110.03350 * 185.68872 * 13 12 11 19 19 H 0.96999 * 119.99862 * 0.02562 * 1 2 3 20 20 H 0.97000 * 120.00112 * 359.72854 * 11 9 7 21 21 H 1.09009 * 109.47182 * 300.00268 * 12 11 9 22 22 H 1.08998 * 109.47207 * 59.99494 * 12 11 9 23 23 H 0.96693 * 114.00320 * 300.69808 * 14 13 12 24 24 H 1.08997 * 110.48331 * 335.78197 * 15 13 12 25 25 H 1.08993 * 110.48515 * 98.42484 * 15 13 12 26 26 H 1.08997 * 110.72381 * 279.56802 * 16 15 13 27 27 H 1.09001 * 110.76332 * 156.22500 * 16 15 13 28 28 H 1.09001 * 110.48517 * 203.40124 * 17 16 15 29 29 H 1.08997 * 110.48773 * 80.76298 * 17 16 15 30 30 H 1.08997 * 110.03354 * 238.56846 * 18 13 12 31 31 H 1.09006 * 110.03581 * 359.97438 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0944 1.6963 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6476 0.0066 12 6 1.2164 -4.9164 0.0127 13 6 2.2106 -6.0793 0.0195 14 8 2.9702 -6.0664 1.2298 15 6 3.1534 -5.9757 -1.1972 16 6 3.3681 -7.4461 -1.6366 17 6 1.9716 -8.0778 -1.4131 18 6 1.4598 -7.4154 -0.1174 19 1 -0.4850 0.8400 -0.0004 20 1 2.9189 -3.6477 0.0070 21 1 0.5894 -4.9697 0.9028 22 1 0.5900 -4.9786 -0.8771 23 1 3.4751 -5.2535 1.3686 24 1 2.6828 -5.4035 -1.9967 25 1 4.1007 -5.5209 -0.9080 26 1 4.1162 -7.9307 -1.0095 27 1 3.6517 -7.4977 -2.6878 28 1 2.0575 -9.1565 -1.2820 29 1 1.3099 -7.8456 -2.2475 30 1 1.6755 -8.0544 0.7389 31 1 0.3870 -7.2355 -0.1882 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307608375.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:03 Heat of formation + Delta-G solvation = -109.543124 kcal Electronic energy + Delta-G solvation = -14447.940891 eV Core-core repulsion = 11921.326062 eV Total energy + Delta-G solvation = -2526.614829 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.29261 -36.90169 -34.71204 -33.01123 -32.16724 -29.01747 -28.41438 -26.26540 -23.78532 -20.95310 -19.69416 -19.53485 -17.51291 -16.24072 -15.57027 -15.43870 -14.96093 -14.02331 -13.91191 -13.69797 -13.29219 -12.58838 -12.27312 -12.12275 -11.66774 -11.20908 -11.19565 -11.07350 -11.02249 -10.84137 -10.55117 -10.50437 -10.39137 -10.20358 -9.54645 -8.85772 -7.63921 -7.54615 -6.19652 -4.65866 3.15039 3.19917 3.21773 4.09084 4.35707 4.57983 4.60652 4.67980 4.99505 5.00292 5.35205 5.54205 5.57348 5.69712 5.73492 5.82030 5.90209 5.96994 6.08522 6.21859 6.27978 6.39377 6.45854 6.56143 7.41705 7.83816 7.93172 8.05847 8.29391 9.00931 9.49575 10.58823 10.77101 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.057128 B = 0.006888 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.006509 B = 4064.159791 C = 4223.129152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.580 6.580 11 N -0.767 5.767 12 C 0.111 3.889 13 C 0.120 3.880 14 O -0.560 6.560 15 C -0.148 4.148 16 C -0.121 4.121 17 C -0.123 4.123 18 C -0.111 4.111 19 H 0.269 0.731 20 H 0.376 0.624 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.376 0.624 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.897 -10.889 -2.157 13.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.463 6.463 11 N -0.424 5.424 12 C -0.014 4.014 13 C 0.079 3.921 14 O -0.366 6.366 15 C -0.186 4.186 16 C -0.159 4.159 17 C -0.161 4.161 18 C -0.149 4.149 19 H 0.080 0.920 20 H 0.207 0.793 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.224 0.776 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.516 -11.376 -2.090 12.814 hybrid contribution 1.146 1.416 -0.073 1.823 sum 6.662 -9.960 -2.163 12.177 Atomic orbital electron populations 1.70012 1.07079 1.27401 1.35201 1.25709 0.94621 1.00303 0.92609 0.86426 0.79808 0.81030 0.79424 1.19307 1.20541 1.19267 1.20843 0.93507 0.89426 1.54603 0.91505 1.18211 0.87216 0.82385 0.76328 1.90604 1.14114 1.86803 1.54763 1.46123 1.08223 1.04999 1.83033 1.21629 0.94317 0.84134 1.01327 1.22144 0.90742 0.95182 0.84044 1.86480 1.64952 1.43636 1.41554 1.23062 0.99749 0.97126 0.98673 1.22460 0.97088 0.95638 1.00683 1.22355 0.96813 0.99465 0.97441 1.22089 0.99698 0.94683 0.98400 0.92024 0.79261 0.92690 0.92585 0.77601 0.90245 0.91171 0.91506 0.91758 0.91631 0.91432 0.90522 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.21 11.83 55.55 0.66 -22.55 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 20.12 29.56 -169.99 -5.02 15.09 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.55 -15.42 9.54 -35.63 -0.34 -15.76 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.29 16 9 C 0.55 15.84 7.75 -12.99 -0.10 15.74 16 10 O -0.58 -19.04 15.02 5.20 0.08 -18.96 16 11 N -0.77 -16.91 5.08 -61.72 -0.31 -17.23 16 12 C 0.11 2.18 4.47 -4.04 -0.02 2.17 16 13 C 0.12 1.82 1.04 -89.50 -0.09 1.73 16 14 O -0.56 -8.69 12.90 -35.23 -0.45 -9.15 16 15 C -0.15 -2.00 5.25 -25.03 -0.13 -2.13 16 16 C -0.12 -1.38 6.91 -24.70 -0.17 -1.55 16 17 C -0.12 -1.38 6.83 -25.07 -0.17 -1.55 16 18 C -0.11 -1.48 6.27 -25.62 -0.16 -1.64 16 19 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 20 H 0.38 7.11 7.28 -40.82 -0.30 6.82 16 21 H 0.05 1.19 8.14 -51.92 -0.42 0.77 16 22 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.38 5.11 8.18 45.56 0.37 5.48 16 24 H 0.08 1.17 7.85 -51.93 -0.41 0.76 16 25 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.01 7.95 -51.93 -0.41 0.60 16 31 H 0.08 1.01 7.67 -51.93 -0.40 0.61 16 LS Contribution 261.25 15.07 3.94 3.94 Total: -1.00 -34.22 261.25 -6.05 -40.27 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -3.64 Total: 9.25 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.28 Total: -0.66 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.34 Total: -39.78 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.38 Total: -28.11 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -34.22 -6.05 -40.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307608375.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.277 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds