Wall clock time and date at job start Sun Mar 29 2020 22:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86795 * 120.00106 * 2 1 4 4 H 1.48501 * 109.47213 * 240.00111 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99739 * 3 2 1 7 7 C 1.40047 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99523 * 179.97438 * 7 2 1 9 9 C 1.46368 * 120.00322 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99926 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00188 * 180.27118 * 9 7 2 12 12 C 1.46500 * 120.00431 * 179.72417 * 11 9 7 13 13 C 1.52999 * 109.47528 * 180.02562 * 12 11 9 14 14 O 1.42902 * 110.01350 * 64.29864 * 13 12 11 15 15 C 1.54267 * 110.03274 * 302.90903 * 13 12 11 16 16 C 1.54959 * 104.15706 * 217.13553 * 15 13 12 17 17 C 1.54889 * 102.77982 * 37.88834 * 16 15 13 18 18 C 1.53870 * 110.03350 * 185.68872 * 13 12 11 19 19 H 0.96999 * 119.99862 * 0.02562 * 1 2 3 20 20 H 0.97000 * 120.00112 * 359.72854 * 11 9 7 21 21 H 1.09009 * 109.47182 * 300.00268 * 12 11 9 22 22 H 1.08998 * 109.47207 * 59.99494 * 12 11 9 23 23 H 0.96693 * 114.00320 * 300.69808 * 14 13 12 24 24 H 1.08997 * 110.48331 * 335.78197 * 15 13 12 25 25 H 1.08993 * 110.48515 * 98.42484 * 15 13 12 26 26 H 1.08997 * 110.72381 * 279.56802 * 16 15 13 27 27 H 1.09001 * 110.76332 * 156.22500 * 16 15 13 28 28 H 1.09001 * 110.48517 * 203.40124 * 17 16 15 29 29 H 1.08997 * 110.48773 * 80.76298 * 17 16 15 30 30 H 1.08997 * 110.03354 * 238.56846 * 18 13 12 31 31 H 1.09006 * 110.03581 * 359.97438 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0944 1.6963 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6476 0.0066 12 6 1.2164 -4.9164 0.0127 13 6 2.2106 -6.0793 0.0195 14 8 2.9702 -6.0664 1.2298 15 6 3.1534 -5.9757 -1.1972 16 6 3.3681 -7.4461 -1.6366 17 6 1.9716 -8.0778 -1.4131 18 6 1.4598 -7.4154 -0.1174 19 1 -0.4850 0.8400 -0.0004 20 1 2.9189 -3.6477 0.0070 21 1 0.5894 -4.9697 0.9028 22 1 0.5900 -4.9786 -0.8771 23 1 3.4751 -5.2535 1.3686 24 1 2.6828 -5.4035 -1.9967 25 1 4.1007 -5.5209 -0.9080 26 1 4.1162 -7.9307 -1.0095 27 1 3.6517 -7.4977 -2.6878 28 1 2.0575 -9.1565 -1.2820 29 1 1.3099 -7.8456 -2.2475 30 1 1.6755 -8.0544 0.7389 31 1 0.3870 -7.2355 -0.1882 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307608375.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:03 Heat of formation + Delta-G solvation = -136.769098 kcal Electronic energy + Delta-G solvation = -14449.121498 eV Core-core repulsion = 11921.326062 eV Total energy + Delta-G solvation = -2527.795435 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.63223 -38.91689 -35.87037 -34.97400 -34.28408 -30.40577 -29.65818 -28.17502 -25.32527 -22.21199 -21.39921 -20.87152 -19.41973 -17.68887 -17.40234 -16.74417 -16.42548 -15.83077 -15.54500 -15.31863 -14.47756 -14.28330 -13.91865 -13.54623 -13.22092 -12.97892 -12.71322 -12.65309 -12.44639 -12.09152 -12.03009 -11.98287 -11.59842 -11.44547 -10.93328 -10.84579 -9.91462 -9.56002 -8.30903 -6.88233 1.40252 1.43760 1.55748 2.23927 2.45139 3.01222 3.20492 3.56766 3.61236 3.71798 3.82050 4.30284 4.40258 4.48508 4.55206 4.73080 4.82359 4.86588 4.97735 5.03820 5.14627 5.19521 5.29966 5.31741 5.46610 5.83216 6.15240 6.21987 6.73165 6.84627 7.49632 8.46074 8.65169 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.057128 B = 0.006888 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.006509 B = 4064.159791 C = 4223.129152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.000 3.000 4 H -0.253 1.253 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.573 4.573 8 H 0.091 0.909 9 C 0.536 3.464 10 O -0.635 6.635 11 N -0.750 5.750 12 C 0.114 3.886 13 C 0.128 3.872 14 O -0.565 6.565 15 C -0.148 4.148 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.114 4.114 19 H 0.275 0.725 20 H 0.394 0.606 21 H 0.028 0.972 22 H 0.041 0.959 23 H 0.383 0.617 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.269 -11.071 -2.584 14.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.177 1.177 5 H -0.200 1.200 6 H -0.177 1.177 7 C -0.610 4.610 8 H 0.109 0.891 9 C 0.340 3.660 10 O -0.522 6.522 11 N -0.405 5.405 12 C -0.011 4.011 13 C 0.087 3.913 14 O -0.372 6.372 15 C -0.186 4.186 16 C -0.152 4.152 17 C -0.156 4.156 18 C -0.152 4.152 19 H 0.085 0.915 20 H 0.228 0.772 21 H 0.046 0.954 22 H 0.060 0.940 23 H 0.232 0.768 24 H 0.083 0.917 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.947 -11.608 -2.515 14.291 hybrid contribution 0.384 1.413 0.085 1.467 sum 8.331 -10.195 -2.430 13.388 Atomic orbital electron populations 1.70192 1.09668 1.29084 1.36377 1.27026 0.95522 1.05127 0.91132 0.85035 0.78151 0.74509 0.80369 1.17683 1.20031 1.17717 1.21417 0.94849 0.89925 1.54764 0.89093 1.18664 0.86841 0.84405 0.76053 1.90557 1.16420 1.87975 1.57279 1.45710 1.09065 1.04458 1.81290 1.21722 0.95218 0.84827 0.99318 1.22128 0.90230 0.94002 0.84974 1.86482 1.64848 1.44132 1.41756 1.23036 0.99399 0.99013 0.97123 1.22457 0.97294 0.93572 1.01863 1.22372 0.96655 1.00588 0.96029 1.22155 0.99274 0.93737 1.00048 0.91535 0.77179 0.95367 0.94040 0.76763 0.91726 0.90098 0.90642 0.90070 0.89416 0.91205 0.90111 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.98 11.83 21.84 0.26 -50.72 16 2 C 0.03 1.51 5.50 85.30 0.47 1.97 16 3 Si 1.00 40.69 29.56 68.60 2.03 42.72 16 4 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 6 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 7 C -0.57 -32.39 9.54 24.83 0.24 -32.15 16 8 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 9 C 0.54 31.42 7.75 86.36 0.67 32.09 16 10 O -0.63 -43.54 15.02 -4.33 -0.06 -43.61 16 11 N -0.75 -33.51 5.08 -467.41 -2.38 -35.89 16 12 C 0.11 4.61 4.47 86.38 0.39 5.00 16 13 C 0.13 3.79 1.04 -10.07 -0.01 3.78 16 14 O -0.56 -16.81 12.90 -148.98 -1.92 -18.73 16 15 C -0.15 -3.73 5.25 31.69 0.17 -3.57 16 16 C -0.11 -2.26 6.91 31.91 0.22 -2.04 16 17 C -0.12 -2.37 6.83 31.67 0.22 -2.16 16 18 C -0.11 -2.92 6.27 31.32 0.20 -2.72 16 19 H 0.27 15.41 8.29 -92.71 -0.77 14.64 16 20 H 0.39 14.67 7.28 -92.71 -0.68 13.99 16 21 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 22 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.38 9.89 8.18 -74.06 -0.61 9.28 16 24 H 0.06 1.83 7.85 -2.39 -0.02 1.82 16 25 H 0.08 1.86 8.05 -2.39 -0.02 1.84 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 2.01 7.95 -2.39 -0.02 1.99 16 31 H 0.07 1.85 7.67 -2.38 -0.02 1.83 16 Total: -1.00 -75.98 261.25 0.33 -75.65 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: -0.14 Total: 30.36 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 2.55 Total: 0.21 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -2.12 Total: -86.61 kcal Atomic # 8 Polarization: -60.35 SS G_CDS: -1.99 Total: -62.34 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -75.98 0.33 -75.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307608375.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.119 kcal (2) G-P(sol) polarization free energy of solvation -75.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds