Wall clock time and date at job start Sun Mar 29 2020 21:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86801 * 119.99872 * 2 1 4 4 H 1.48497 * 109.47398 * 270.00310 * 3 2 1 5 5 H 1.48504 * 109.46914 * 30.00350 * 3 2 1 6 6 H 1.48499 * 109.46994 * 149.99793 * 3 2 1 7 7 C 1.38749 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99910 * 0.02562 * 7 2 1 9 9 O 1.34916 * 119.99880 * 179.97438 * 7 2 1 10 10 C 1.34321 * 116.99937 * 179.97438 * 9 7 2 11 11 O 1.21210 * 119.99677 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99910 * 180.02562 * 10 9 7 13 13 H 1.08998 * 109.73280 * 59.60034 * 12 10 9 14 14 C 1.53347 * 109.60061 * 180.02562 * 12 10 9 15 15 C 1.53076 * 108.42242 * 187.28961 * 14 12 10 16 16 C 1.50171 * 109.89054 * 311.09644 * 15 14 12 17 17 O 1.21276 * 118.24494 * 197.60292 * 16 15 14 18 18 N 1.33354 * 123.50876 * 17.58999 * 16 15 14 19 19 C 1.45751 * 124.10921 * 357.74542 * 18 16 15 20 20 H 0.97001 * 120.00391 * 359.97438 * 1 2 3 21 21 H 1.08991 * 109.67511 * 67.55884 * 14 12 10 22 22 H 1.09004 * 109.67114 * 307.01852 * 14 12 10 23 23 H 1.09004 * 109.39818 * 71.22899 * 15 14 12 24 24 H 1.09004 * 109.39798 * 191.05597 * 15 14 12 25 25 H 0.96998 * 117.94291 * 177.77768 * 18 16 15 26 26 H 1.08997 * 109.30226 * 139.41189 * 19 18 16 27 27 H 1.09000 * 109.30352 * 258.99880 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4959 2.0465 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5459 1.4402 0.7001 7 6 2.0082 -1.2016 -0.0005 8 1 1.4682 -2.1370 -0.0014 9 8 3.3574 -1.2015 -0.0011 10 6 3.9672 -2.3983 -0.0010 11 8 3.3070 -3.4149 -0.0010 12 6 5.4721 -2.4771 -0.0010 13 1 5.8668 -1.9779 0.8839 14 6 5.9103 -3.9466 -0.0016 15 6 7.4290 -3.9987 0.1827 16 6 8.0926 -3.0499 -0.7737 17 8 9.2765 -3.1923 -0.9948 18 7 7.4495 -2.0594 -1.3932 19 6 6.0212 -1.8022 -1.2588 20 1 -0.4851 0.8400 0.0004 21 1 5.6398 -4.4098 -0.9504 22 1 5.4229 -4.4752 0.8177 23 1 7.6795 -3.7162 1.2053 24 1 7.7826 -5.0116 -0.0102 25 1 7.9646 -1.4737 -1.9698 26 1 5.8534 -0.7272 -1.1930 27 1 5.5005 -2.1954 -2.1319 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307669800.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:15 Heat of formation + Delta-G solvation = -125.326965 kcal Electronic energy + Delta-G solvation = -14170.358229 eV Core-core repulsion = 11507.225867 eV Total energy + Delta-G solvation = -2663.132362 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.43313 -39.18254 -36.51819 -35.31593 -32.94708 -32.40219 -30.11593 -25.75303 -24.62204 -23.11102 -20.51051 -18.89975 -18.08473 -17.49431 -16.62168 -16.01517 -15.49052 -14.94984 -14.82580 -14.14053 -13.86422 -13.74485 -13.31227 -12.64637 -12.38184 -11.85833 -11.62351 -11.33910 -11.16284 -10.99940 -10.58202 -10.45324 -9.80630 -9.74847 -9.29873 -9.11977 -8.76965 -6.45412 -4.21936 2.61568 2.98111 3.16273 3.19571 3.29092 3.34404 3.88411 4.16142 4.61919 4.67380 4.73569 4.99576 5.06892 5.27022 5.33388 5.57907 5.68924 5.74879 6.04675 6.20255 6.30766 6.71256 7.26842 7.62820 7.94767 8.16691 8.50370 8.92014 9.56103 10.62861 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.050128 B = 0.008225 C = 0.007294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.431299 B = 3403.449093 C = 3837.921825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.067 3.933 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.384 4.384 8 H 0.110 0.890 9 O -0.248 6.248 10 C 0.414 3.586 11 O -0.532 6.532 12 C -0.088 4.088 13 H 0.106 0.894 14 C -0.106 4.106 15 C -0.134 4.134 16 C 0.520 3.480 17 O -0.567 6.567 18 N -0.716 5.716 19 C 0.117 3.883 20 H 0.280 0.720 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.102 0.898 24 H 0.104 0.896 25 H 0.400 0.600 26 H 0.092 0.908 27 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.751 -1.503 -0.677 11.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.137 4.137 3 Si 0.729 3.271 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.459 4.459 8 H 0.128 0.872 9 O -0.157 6.157 10 C 0.259 3.741 11 O -0.426 6.426 12 C -0.108 4.108 13 H 0.124 0.876 14 C -0.143 4.143 15 C -0.174 4.174 16 C 0.307 3.693 17 O -0.446 6.446 18 N -0.368 5.368 19 C -0.007 4.007 20 H 0.091 0.909 21 H 0.097 0.903 22 H 0.108 0.892 23 H 0.120 0.880 24 H 0.123 0.877 25 H 0.236 0.764 26 H 0.110 0.890 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.834 -1.850 -0.639 11.995 hybrid contribution 0.155 1.088 -0.200 1.117 sum 11.989 -0.762 -0.839 12.042 Atomic orbital electron populations 1.69601 1.05747 1.28531 1.47178 1.24554 0.95000 0.98690 0.95463 0.86239 0.80331 0.81549 0.78956 1.19782 1.20697 1.18379 1.20652 0.76038 0.97009 1.52208 0.87233 1.83506 1.24081 1.31255 1.76840 1.22464 0.89569 0.82830 0.79264 1.90620 1.66545 1.36255 1.49214 1.21097 0.91119 0.98450 1.00130 0.87598 1.21536 0.93301 0.94534 1.04977 1.21690 0.95875 1.00061 0.99776 1.20269 0.86894 0.81139 0.80991 1.90737 1.16356 1.72935 1.64616 1.45480 1.10124 1.32288 1.48870 1.21382 0.79843 1.01818 0.97696 0.90921 0.90307 0.89178 0.87991 0.87749 0.76419 0.88951 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.00 13.96 55.48 0.77 -24.22 15 2 C 0.07 1.84 5.49 -17.53 -0.10 1.75 15 3 Si 0.90 20.30 28.62 -169.99 -4.86 15.44 15 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 6 H -0.26 -5.65 7.11 56.52 0.40 -5.25 15 7 C -0.38 -10.85 10.10 30.92 0.31 -10.53 15 8 H 0.11 3.44 7.09 -52.48 -0.37 3.07 15 9 O -0.25 -6.04 8.52 -20.72 -0.18 -6.22 15 10 C 0.41 8.80 7.18 36.00 0.26 9.06 15 11 O -0.53 -13.03 15.13 -19.05 -0.29 -13.32 15 12 C -0.09 -1.31 2.71 -91.63 -0.25 -1.56 15 13 H 0.11 1.41 8.12 -51.93 -0.42 0.99 15 14 C -0.11 -1.38 4.71 -26.51 -0.12 -1.50 15 15 C -0.13 -1.51 6.03 -28.10 -0.17 -1.67 15 16 C 0.52 7.04 7.71 -11.87 -0.09 6.95 15 17 O -0.57 -9.61 17.78 5.56 0.10 -9.51 15 18 N -0.72 -8.59 5.45 -61.38 -0.33 -8.92 15 19 C 0.12 1.51 6.42 -4.48 -0.03 1.48 15 20 H 0.28 7.34 8.31 -40.82 -0.34 7.00 15 21 H 0.08 1.06 8.13 -51.93 -0.42 0.64 15 22 H 0.09 1.20 7.90 -51.93 -0.41 0.79 15 23 H 0.10 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.10 1.05 8.14 -51.93 -0.42 0.62 15 25 H 0.40 4.20 8.80 -40.82 -0.36 3.84 15 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 27 H 0.08 0.99 8.11 -51.93 -0.42 0.56 15 LS Contribution 242.02 15.07 3.65 3.65 Total: -1.00 -32.74 242.02 -4.14 -36.88 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -2.81 Total: 2.25 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -0.19 Total: 3.97 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.44 Total: -33.14 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.37 Total: -29.05 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.86 Total: 15.44 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -32.74 -4.14 -36.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307669800.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.442 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds