Wall clock time and date at job start Sun Mar 29 2020 21:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86801 * 119.99872 * 2 1 4 4 H 1.48497 * 109.47398 * 270.00310 * 3 2 1 5 5 H 1.48504 * 109.46914 * 30.00350 * 3 2 1 6 6 H 1.48499 * 109.46994 * 149.99793 * 3 2 1 7 7 C 1.38749 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99910 * 0.02562 * 7 2 1 9 9 O 1.34916 * 119.99880 * 179.97438 * 7 2 1 10 10 C 1.34321 * 116.99937 * 179.97438 * 9 7 2 11 11 O 1.21210 * 119.99677 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99910 * 180.02562 * 10 9 7 13 13 H 1.08998 * 109.73280 * 59.60034 * 12 10 9 14 14 C 1.53347 * 109.60061 * 180.02562 * 12 10 9 15 15 C 1.53076 * 108.42242 * 187.28961 * 14 12 10 16 16 C 1.50171 * 109.89054 * 311.09644 * 15 14 12 17 17 O 1.21276 * 118.24494 * 197.60292 * 16 15 14 18 18 N 1.33354 * 123.50876 * 17.58999 * 16 15 14 19 19 C 1.45751 * 124.10921 * 357.74542 * 18 16 15 20 20 H 0.97001 * 120.00391 * 359.97438 * 1 2 3 21 21 H 1.08991 * 109.67511 * 67.55884 * 14 12 10 22 22 H 1.09004 * 109.67114 * 307.01852 * 14 12 10 23 23 H 1.09004 * 109.39818 * 71.22899 * 15 14 12 24 24 H 1.09004 * 109.39798 * 191.05597 * 15 14 12 25 25 H 0.96998 * 117.94291 * 177.77768 * 18 16 15 26 26 H 1.08997 * 109.30226 * 139.41189 * 19 18 16 27 27 H 1.09000 * 109.30352 * 258.99880 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4959 2.0465 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5459 1.4402 0.7001 7 6 2.0082 -1.2016 -0.0005 8 1 1.4682 -2.1370 -0.0014 9 8 3.3574 -1.2015 -0.0011 10 6 3.9672 -2.3983 -0.0010 11 8 3.3070 -3.4149 -0.0010 12 6 5.4721 -2.4771 -0.0010 13 1 5.8668 -1.9779 0.8839 14 6 5.9103 -3.9466 -0.0016 15 6 7.4290 -3.9987 0.1827 16 6 8.0926 -3.0499 -0.7737 17 8 9.2765 -3.1923 -0.9948 18 7 7.4495 -2.0594 -1.3932 19 6 6.0212 -1.8022 -1.2588 20 1 -0.4851 0.8400 0.0004 21 1 5.6398 -4.4098 -0.9504 22 1 5.4229 -4.4752 0.8177 23 1 7.6795 -3.7162 1.2053 24 1 7.7826 -5.0116 -0.0102 25 1 7.9646 -1.4737 -1.9698 26 1 5.8534 -0.7272 -1.1930 27 1 5.5005 -2.1954 -2.1319 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307669800.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:14 Heat of formation + Delta-G solvation = -149.731316 kcal Electronic energy + Delta-G solvation = -14171.416481 eV Core-core repulsion = 11507.225867 eV Total energy + Delta-G solvation = -2664.190614 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.74400 -40.76490 -37.94401 -37.00128 -34.48511 -34.02071 -31.31975 -27.69307 -25.72137 -24.43071 -21.99843 -20.23683 -20.02317 -18.91836 -18.05269 -17.20479 -16.90706 -16.52137 -16.30926 -15.69898 -15.14315 -14.98920 -14.55029 -14.37269 -14.13772 -13.27167 -12.95334 -12.82876 -12.43817 -12.29294 -12.21333 -12.00789 -11.82801 -11.12713 -10.85521 -10.81643 -10.16916 -8.52672 -6.40036 1.27717 1.38058 1.52210 1.57065 1.59970 2.14302 2.29275 2.42967 2.93296 3.52330 3.61376 3.62873 3.87686 4.17311 4.38971 4.46930 4.59006 4.71939 4.87063 5.00372 5.16587 5.50679 5.76799 5.90005 6.24720 6.54407 6.83928 7.15087 7.57766 8.60094 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.050128 B = 0.008225 C = 0.007294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.431299 B = 3403.449093 C = 3837.921825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.016 3.984 3 Si 0.982 3.018 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.244 1.244 7 C -0.407 4.407 8 H 0.057 0.943 9 O -0.251 6.251 10 C 0.420 3.580 11 O -0.567 6.567 12 C -0.081 4.081 13 H 0.133 0.867 14 C -0.101 4.101 15 C -0.123 4.123 16 C 0.518 3.482 17 O -0.602 6.602 18 N -0.704 5.704 19 C 0.123 3.877 20 H 0.289 0.711 21 H 0.071 0.929 22 H 0.086 0.914 23 H 0.125 0.875 24 H 0.120 0.880 25 H 0.410 0.590 26 H 0.107 0.893 27 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.976 -0.179 -0.508 13.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.801 3.199 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.167 1.167 7 C -0.483 4.483 8 H 0.075 0.925 9 O -0.160 6.160 10 C 0.266 3.734 11 O -0.463 6.463 12 C -0.100 4.100 13 H 0.151 0.849 14 C -0.139 4.139 15 C -0.162 4.162 16 C 0.306 3.694 17 O -0.485 6.485 18 N -0.355 5.355 19 C -0.001 4.001 20 H 0.098 0.902 21 H 0.089 0.911 22 H 0.105 0.895 23 H 0.143 0.857 24 H 0.138 0.862 25 H 0.247 0.753 26 H 0.125 0.875 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.053 -0.542 -0.481 14.072 hybrid contribution -0.560 0.514 -0.257 0.802 sum 13.493 -0.029 -0.739 13.513 Atomic orbital electron populations 1.69711 1.07782 1.30232 1.48121 1.25588 0.95909 1.02821 0.94110 0.85090 0.79228 0.75605 0.79936 1.18174 1.19733 1.16682 1.20291 0.77809 0.95668 1.54498 0.92497 1.83519 1.21826 1.32652 1.78038 1.23860 0.92042 0.81446 0.76072 1.90613 1.68227 1.37366 1.50055 1.21241 0.85790 1.00489 1.02482 0.84886 1.21509 0.94760 0.93047 1.04575 1.21673 0.93627 1.00495 1.00420 1.20630 0.86471 0.81285 0.80980 1.90736 1.17891 1.73889 1.65938 1.45354 1.09606 1.32035 1.48533 1.21299 0.80070 1.02406 0.96358 0.90152 0.91057 0.89508 0.85746 0.86215 0.75325 0.87482 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.87 13.96 21.62 0.30 -53.57 15 2 C 0.02 0.87 5.49 84.87 0.47 1.33 15 3 Si 0.98 40.73 28.62 68.60 1.96 42.69 15 4 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 15 6 H -0.24 -9.40 7.11 99.48 0.71 -8.69 15 7 C -0.41 -23.66 10.10 67.94 0.69 -22.98 15 8 H 0.06 3.82 7.09 -2.91 -0.02 3.80 15 9 O -0.25 -12.12 8.52 14.81 0.13 -11.99 15 10 C 0.42 17.63 7.18 71.23 0.51 18.14 15 11 O -0.57 -28.39 15.13 20.77 0.31 -28.08 15 12 C -0.08 -2.19 2.71 -11.45 -0.03 -2.22 15 13 H 0.13 3.01 8.12 -2.39 -0.02 2.99 15 14 C -0.10 -2.40 4.71 30.74 0.14 -2.26 15 15 C -0.12 -2.35 6.03 29.71 0.18 -2.17 15 16 C 0.52 12.50 7.71 87.71 0.68 13.18 15 17 O -0.60 -19.01 17.78 -3.02 -0.05 -19.07 15 18 N -0.70 -14.69 5.45 -467.31 -2.55 -17.24 15 19 C 0.12 2.80 6.42 86.50 0.56 3.36 15 20 H 0.29 15.28 8.31 -92.71 -0.77 14.51 15 21 H 0.07 1.81 8.13 -2.39 -0.02 1.79 15 22 H 0.09 2.16 7.90 -2.39 -0.02 2.14 15 23 H 0.12 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.12 2.01 8.14 -2.39 -0.02 1.99 15 25 H 0.41 7.36 8.80 -92.71 -0.82 6.54 15 26 H 0.11 2.21 8.14 -2.39 -0.02 2.19 15 27 H 0.07 1.75 8.11 -2.39 -0.02 1.73 15 Total: -1.00 -73.07 242.02 3.67 -69.40 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.38 Total: 11.46 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 3.19 Total: 6.39 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -2.24 Total: -70.81 kcal Atomic # 8 Polarization: -59.52 SS G_CDS: 0.39 Total: -59.13 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 1.96 Total: 42.69 kcal Total: -73.07 3.67 -69.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307669800.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.331 kcal (2) G-P(sol) polarization free energy of solvation -73.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds