Wall clock time and date at job start Sun Mar 29 2020 21:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31449 * 1 3 3 Si 1.86803 * 119.99839 * 2 1 4 4 H 1.48498 * 109.46807 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 120.00015 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00061 * 3 2 1 7 7 C 1.38745 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00332 * 179.97438 * 7 2 1 9 9 O 1.34930 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.34303 * 117.00103 * 179.97438 * 9 7 2 11 11 O 1.21216 * 120.00306 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00098 * 179.97438 * 10 9 7 13 13 H 1.08999 * 109.60217 * 300.00060 * 12 10 9 14 14 C 1.53352 * 109.60429 * 179.67567 * 12 10 9 15 15 C 1.53073 * 108.42300 * 172.71293 * 14 12 10 16 16 C 1.50176 * 109.89033 * 48.89974 * 15 14 12 17 17 O 1.21283 * 118.24349 * 162.39447 * 16 15 14 18 18 N 1.33349 * 123.51042 * 342.41803 * 16 15 14 19 19 C 1.45819 * 124.16636 * 2.03870 * 18 16 15 20 20 H 0.97001 * 119.99860 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.67118 * 292.44628 * 14 12 10 22 22 H 1.08995 * 109.67372 * 52.98119 * 14 12 10 23 23 H 1.08995 * 109.39639 * 169.02737 * 15 14 12 24 24 H 1.08998 * 109.40035 * 288.85881 * 15 14 12 25 25 H 0.96995 * 117.94333 * 182.22808 * 18 16 15 26 26 H 1.09007 * 109.45934 * 220.85915 * 19 18 16 27 27 H 1.08998 * 109.17370 * 101.46793 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 1.2834 2.7464 -0.0006 5 1 3.1022 1.6965 1.2124 6 1 3.1022 1.6965 -1.2125 7 6 2.0083 -1.2015 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3337 -2.3701 0.0005 10 6 2.0652 -3.4964 0.0005 11 8 3.2757 -3.4330 0.0001 12 6 1.3811 -4.8392 0.0011 13 1 0.7579 -4.9317 0.8906 14 6 2.4347 -5.9534 -0.0072 15 6 1.7214 -7.2951 0.1778 16 6 0.5631 -7.3933 -0.7731 17 8 0.0934 -8.4894 -0.9941 18 7 0.0238 -6.3399 -1.3876 19 6 0.5123 -4.9729 -1.2501 20 1 -0.4850 0.8401 0.0004 21 1 2.9664 -5.9486 -0.9587 22 1 3.1402 -5.7974 0.8088 23 1 2.4212 -8.1073 -0.0189 24 1 1.3553 -7.3724 1.2015 25 1 -0.7440 -6.4919 -1.9606 26 1 -0.3345 -4.2905 -1.1754 27 1 1.1033 -4.7139 -2.1285 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307669801.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:17 Heat of formation + Delta-G solvation = -152.155942 kcal Electronic energy + Delta-G solvation = -14114.651818 eV Core-core repulsion = 11450.356064 eV Total energy + Delta-G solvation = -2664.295754 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.67049 -40.67660 -37.85191 -36.90318 -34.28483 -34.01318 -31.25516 -27.55266 -25.73257 -24.53152 -22.12546 -20.11709 -19.86682 -18.86064 -17.98469 -17.17255 -16.77896 -16.42263 -16.25026 -16.02275 -15.11115 -14.97250 -14.49111 -14.34802 -13.66182 -13.17692 -12.90390 -12.82034 -12.39851 -12.29116 -12.15258 -12.06673 -11.89472 -11.04085 -10.85716 -10.67787 -10.18121 -8.52596 -6.31743 1.30294 1.37009 1.51643 1.56205 1.62271 2.07779 2.25786 2.69534 2.98813 3.56234 3.62419 3.65173 3.94324 4.17879 4.39469 4.57967 4.65587 4.77446 4.90240 5.02295 5.17078 5.20893 5.74142 5.84025 6.24491 6.66431 6.93406 7.13585 7.76021 8.67015 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.067764 B = 0.007086 C = 0.006582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.098764 B = 3950.238953 C = 4253.016502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.000 4.000 3 Si 1.012 2.988 4 H -0.263 1.263 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.420 4.420 8 H 0.083 0.917 9 O -0.237 6.237 10 C 0.405 3.595 11 O -0.575 6.575 12 C -0.080 4.080 13 H 0.122 0.878 14 C -0.097 4.097 15 C -0.123 4.123 16 C 0.517 3.483 17 O -0.602 6.602 18 N -0.704 5.704 19 C 0.129 3.871 20 H 0.278 0.722 21 H 0.072 0.928 22 H 0.088 0.912 23 H 0.123 0.877 24 H 0.123 0.877 25 H 0.408 0.592 26 H 0.095 0.905 27 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.762 -7.343 -0.486 7.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.201 4.201 3 Si 0.831 3.169 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.496 4.496 8 H 0.100 0.900 9 O -0.145 6.145 10 C 0.252 3.748 11 O -0.472 6.472 12 C -0.100 4.100 13 H 0.140 0.860 14 C -0.135 4.135 15 C -0.162 4.162 16 C 0.306 3.694 17 O -0.485 6.485 18 N -0.355 5.355 19 C 0.005 3.995 20 H 0.088 0.912 21 H 0.090 0.910 22 H 0.106 0.894 23 H 0.141 0.859 24 H 0.141 0.859 25 H 0.245 0.755 26 H 0.114 0.886 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.833 -7.670 -0.462 7.729 hybrid contribution 0.029 0.903 -0.244 0.936 sum 0.862 -6.766 -0.706 6.857 Atomic orbital electron populations 1.70050 1.07485 1.29395 1.46682 1.26421 0.96800 1.02128 0.94726 0.84753 0.77654 0.74734 0.79723 1.18678 1.18752 1.18686 1.21352 0.92170 0.81153 1.54910 0.89977 1.83890 1.40163 1.14048 1.76405 1.23881 0.86534 0.87692 0.76672 1.90547 1.16945 1.88432 1.51290 1.21157 0.98527 0.88532 1.01775 0.86025 1.21482 0.96532 0.90935 1.04568 1.21680 0.95245 0.98951 1.00337 1.20662 0.84802 0.83056 0.80863 1.90728 1.64552 1.27411 1.65764 1.45393 1.34553 1.06785 1.48793 1.21187 0.99103 0.82702 0.96544 0.91234 0.90956 0.89358 0.85924 0.85933 0.75513 0.88649 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.60 13.67 21.62 0.30 -50.30 15 2 C 0.00 0.01 5.49 84.87 0.47 0.47 15 3 Si 1.01 41.59 29.55 68.60 2.03 43.61 15 4 H -0.26 -10.03 7.11 99.48 0.71 -9.33 15 5 H -0.26 -10.45 7.11 99.48 0.71 -9.75 15 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 15 7 C -0.42 -24.09 9.65 67.94 0.66 -23.43 15 8 H 0.08 4.79 6.86 -2.91 -0.02 4.77 15 9 O -0.24 -12.83 9.68 14.85 0.14 -12.69 15 10 C 0.41 18.33 7.19 71.24 0.51 18.85 15 11 O -0.57 -28.88 15.13 20.76 0.31 -28.57 15 12 C -0.08 -2.52 2.70 -11.45 -0.03 -2.55 15 13 H 0.12 3.44 8.12 -2.39 -0.02 3.42 15 14 C -0.10 -2.54 4.72 30.74 0.14 -2.39 15 15 C -0.12 -2.63 6.03 29.71 0.18 -2.45 15 16 C 0.52 13.95 7.71 87.71 0.68 14.63 15 17 O -0.60 -20.39 17.78 -3.04 -0.05 -20.45 15 18 N -0.70 -17.40 5.45 -467.19 -2.55 -19.95 15 19 C 0.13 3.58 6.43 86.48 0.56 4.14 15 20 H 0.28 14.31 8.31 -92.71 -0.77 13.54 15 21 H 0.07 1.96 8.13 -2.39 -0.02 1.94 15 22 H 0.09 2.34 7.90 -2.39 -0.02 2.32 15 23 H 0.12 2.24 8.14 -2.39 -0.02 2.22 15 24 H 0.12 2.18 8.14 -2.39 -0.02 2.16 15 25 H 0.41 8.94 8.80 -92.71 -0.82 8.12 15 26 H 0.10 2.72 8.14 -2.38 -0.02 2.70 15 27 H 0.07 2.02 8.11 -2.39 -0.02 2.00 15 Total: -1.00 -70.36 243.14 3.72 -66.64 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.38 Total: 14.43 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 3.16 Total: 7.26 kcal Atomic # 7 Polarization: -68.00 SS G_CDS: -2.25 Total: -70.25 kcal Atomic # 8 Polarization: -62.11 SS G_CDS: 0.40 Total: -61.70 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -70.36 3.72 -66.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307669801.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.512 kcal (2) G-P(sol) polarization free energy of solvation -70.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds