Wall clock time and date at job start Sun Mar 29 2020 22:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37097 * 119.99602 * 2 1 4 4 H 1.08006 * 119.99853 * 197.82481 * 3 2 1 5 5 C 1.38948 * 120.00439 * 17.82070 * 3 2 1 6 6 N 1.31406 * 119.99805 * 17.66959 * 5 3 2 7 7 Si 1.86800 * 120.00039 * 197.67311 * 5 3 2 8 8 H 1.48501 * 109.47444 * 94.98592 * 7 5 3 9 9 H 1.48501 * 109.47016 * 214.98375 * 7 5 3 10 10 H 1.48496 * 109.47294 * 334.98383 * 7 5 3 11 11 C 1.34774 * 120.00331 * 179.97438 * 2 1 3 12 12 O 1.21289 * 120.00282 * 185.79637 * 11 2 1 13 13 C 1.50705 * 119.99884 * 5.80502 * 11 2 1 14 14 C 1.53005 * 110.45544 * 298.47817 * 13 11 2 15 15 C 1.54506 * 110.51502 * 175.86907 * 13 11 2 16 16 C 1.54479 * 104.18600 * 241.15009 * 15 13 11 17 17 O 1.44642 * 104.69633 * 336.18971 * 16 15 13 18 18 C 1.44424 * 105.36993 * 40.34639 * 17 16 15 19 19 H 1.08997 * 109.47381 * 271.30520 * 1 2 3 20 20 H 1.09000 * 109.46755 * 31.31007 * 1 2 3 21 21 H 1.09002 * 109.46407 * 151.30736 * 1 2 3 22 22 H 0.97008 * 120.00122 * 180.02562 * 6 5 3 23 23 H 1.09002 * 109.46624 * 297.39285 * 14 13 11 24 24 H 1.08999 * 109.47184 * 57.39326 * 14 13 11 25 25 H 1.08995 * 109.46910 * 177.39583 * 14 13 11 26 26 H 1.09002 * 110.50409 * 359.86085 * 15 13 11 27 27 H 1.09000 * 110.51295 * 122.43296 * 15 13 11 28 28 H 1.08999 * 110.37066 * 94.92082 * 16 15 13 29 29 H 1.08995 * 110.37201 * 217.25560 * 16 15 13 30 30 H 1.09007 * 110.36924 * 200.73956 * 18 17 16 31 31 H 1.08990 * 110.46951 * 78.44479 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1916 1.2098 -0.2863 5 6 1.5057 2.3618 0.3682 6 7 0.3759 2.3091 1.0372 7 14 2.2450 4.0156 -0.0877 8 1 1.6378 4.4970 -1.3545 9 1 1.9729 4.9948 0.9951 10 1 3.7120 3.8698 -0.2660 11 6 2.1390 -1.1671 0.0005 12 8 3.3472 -1.1698 0.1066 13 6 1.3913 -2.4690 -0.1309 14 6 0.4252 -2.6515 1.0414 15 6 2.3786 -3.6550 -0.2085 16 6 2.0979 -4.2916 -1.5878 17 8 0.7416 -3.9004 -1.9033 18 6 0.6298 -2.5261 -1.4738 19 1 -0.3634 0.0234 1.0274 20 1 -0.3633 0.8780 -0.5341 21 1 -0.3632 -0.9015 -0.4934 22 1 -0.0745 3.1291 1.2940 23 1 0.9895 -2.7037 1.9725 24 1 -0.2626 -1.8068 1.0803 25 1 -0.1395 -3.5740 0.9066 26 1 3.4075 -3.2994 -0.1543 27 1 2.1800 -4.3701 0.5898 28 1 2.7886 -3.8996 -2.3343 29 1 2.1783 -5.3770 -1.5281 30 1 -0.4167 -2.2579 -1.3283 31 1 1.0937 -1.8604 -2.2016 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307711079.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:40 Heat of formation + Delta-G solvation = -65.061283 kcal Electronic energy + Delta-G solvation = -15163.805564 eV Core-core repulsion = 12639.119612 eV Total energy + Delta-G solvation = -2524.685951 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.99978 -37.56769 -34.79707 -33.13700 -31.48108 -29.40144 -26.29422 -26.14035 -24.79021 -22.33152 -21.34837 -18.38033 -16.97633 -16.44091 -15.72666 -15.10122 -14.79520 -14.23437 -13.97448 -13.67336 -13.39035 -12.69390 -12.29291 -11.98217 -11.68827 -11.46478 -11.28878 -11.19119 -10.92128 -10.67034 -10.44850 -10.33948 -10.23395 -10.10817 -9.42681 -9.02590 -8.34263 -7.75258 -6.36400 -3.86784 3.13423 3.23755 3.29306 3.81467 4.07000 4.27100 4.82366 4.91230 5.03932 5.27189 5.33254 5.52274 5.61115 5.75742 5.87839 5.97395 6.04495 6.17113 6.24565 6.33814 6.37708 6.56166 6.61028 6.82674 7.07009 7.18297 7.54230 8.07990 8.45189 9.15277 9.40146 9.94918 10.67679 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051505 B = 0.009389 C = 0.008933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.506580 B = 2981.394442 C = 3133.631900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.441 5.441 3 C -0.308 4.308 4 H 0.100 0.900 5 C 0.030 3.970 6 N -0.878 5.878 7 Si 0.924 3.076 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.454 3.546 12 O -0.588 6.588 13 C -0.104 4.104 14 C -0.144 4.144 15 C -0.141 4.141 16 C 0.046 3.954 17 O -0.381 6.381 18 C 0.058 3.942 19 H 0.059 0.941 20 H 0.070 0.930 21 H 0.038 0.962 22 H 0.268 0.732 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.591 -7.410 -2.687 8.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.158 5.158 3 C -0.436 4.436 4 H 0.118 0.882 5 C -0.173 4.173 6 N -0.517 5.517 7 Si 0.751 3.249 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.193 1.193 11 C 0.242 3.758 12 O -0.473 6.473 13 C -0.108 4.108 14 C -0.202 4.202 15 C -0.178 4.178 16 C -0.030 4.030 17 O -0.300 6.300 18 C -0.019 4.019 19 H 0.077 0.923 20 H 0.088 0.912 21 H 0.056 0.944 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.077 0.923 26 H 0.117 0.883 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.317 -7.362 -2.650 8.160 hybrid contribution 0.282 1.094 0.062 1.131 sum -2.035 -6.268 -2.589 7.080 Atomic orbital electron populations 1.21894 0.81344 0.99455 1.01627 1.43536 1.05470 1.04664 1.62154 1.19716 0.97482 0.82857 1.43520 0.88186 1.25288 0.96595 0.99927 0.95497 1.70047 1.17914 1.28820 1.34912 0.85933 0.79609 0.81219 0.78116 1.20395 1.20955 1.19323 1.19631 0.87811 0.84206 0.84186 1.90473 1.14428 1.86414 1.55989 1.21924 0.96451 0.95462 0.96913 1.22066 0.98848 1.02555 0.96702 1.22950 1.01989 0.95776 0.97124 1.23440 0.84072 0.99746 0.95783 1.89074 1.29789 1.27539 1.83618 1.23649 1.00990 0.83560 0.93658 0.92301 0.91167 0.94370 0.92221 0.92385 0.90487 0.92311 0.88255 0.91008 0.92442 0.89518 0.88308 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.20 6.97 59.85 0.42 2.61 16 2 N -0.44 -11.22 3.02 -122.19 -0.37 -11.59 16 3 C -0.31 -8.58 9.32 -14.93 -0.14 -8.72 16 4 H 0.10 2.93 7.42 -52.48 -0.39 2.54 16 5 C 0.03 0.80 4.99 -17.47 -0.09 0.71 16 6 N -0.88 -23.18 10.71 55.50 0.59 -22.59 16 7 Si 0.92 20.64 29.59 -169.99 -5.03 15.61 16 8 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 C 0.45 11.09 6.34 -10.98 -0.07 11.02 16 12 O -0.59 -16.34 14.98 5.55 0.08 -16.26 16 13 C -0.10 -1.97 0.68 -154.09 -0.11 -2.08 16 14 C -0.14 -2.45 7.98 37.16 0.30 -2.15 16 15 C -0.14 -2.40 6.31 -25.16 -0.16 -2.56 16 16 C 0.05 0.70 7.65 37.93 0.29 0.99 16 17 O -0.38 -6.46 11.65 -35.23 -0.41 -6.87 16 18 C 0.06 1.01 5.53 37.94 0.21 1.22 16 19 H 0.06 1.34 6.84 -51.93 -0.36 0.98 16 20 H 0.07 1.63 6.85 -51.93 -0.36 1.27 16 21 H 0.04 0.70 3.19 -51.93 -0.17 0.53 16 22 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.08 1.32 4.51 -51.93 -0.23 1.09 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.10 1.90 6.51 -51.93 -0.34 1.57 16 27 H 0.07 1.08 7.73 -51.93 -0.40 0.68 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.10 1.55 6.11 -51.92 -0.32 1.24 16 31 H 0.06 1.16 7.86 -51.93 -0.41 0.75 16 LS Contribution 244.94 15.07 3.69 3.69 Total: -1.00 -30.46 244.94 -4.58 -35.04 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -3.79 Total: 1.91 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 0.65 Total: 1.06 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.22 Total: -34.18 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.33 Total: -23.13 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.46 -4.58 -35.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307711079.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.025 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds