Wall clock time and date at job start Sun Mar 29 2020 22:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37097 * 119.99602 * 2 1 4 4 H 1.08006 * 119.99853 * 197.82481 * 3 2 1 5 5 C 1.38948 * 120.00439 * 17.82070 * 3 2 1 6 6 N 1.31406 * 119.99805 * 17.66959 * 5 3 2 7 7 Si 1.86800 * 120.00039 * 197.67311 * 5 3 2 8 8 H 1.48501 * 109.47444 * 94.98592 * 7 5 3 9 9 H 1.48501 * 109.47016 * 214.98375 * 7 5 3 10 10 H 1.48496 * 109.47294 * 334.98383 * 7 5 3 11 11 C 1.34774 * 120.00331 * 179.97438 * 2 1 3 12 12 O 1.21289 * 120.00282 * 185.79637 * 11 2 1 13 13 C 1.50705 * 119.99884 * 5.80502 * 11 2 1 14 14 C 1.53005 * 110.45544 * 298.47817 * 13 11 2 15 15 C 1.54506 * 110.51502 * 175.86907 * 13 11 2 16 16 C 1.54479 * 104.18600 * 241.15009 * 15 13 11 17 17 O 1.44642 * 104.69633 * 336.18971 * 16 15 13 18 18 C 1.44424 * 105.36993 * 40.34639 * 17 16 15 19 19 H 1.08997 * 109.47381 * 271.30520 * 1 2 3 20 20 H 1.09000 * 109.46755 * 31.31007 * 1 2 3 21 21 H 1.09002 * 109.46407 * 151.30736 * 1 2 3 22 22 H 0.97008 * 120.00122 * 180.02562 * 6 5 3 23 23 H 1.09002 * 109.46624 * 297.39285 * 14 13 11 24 24 H 1.08999 * 109.47184 * 57.39326 * 14 13 11 25 25 H 1.08995 * 109.46910 * 177.39583 * 14 13 11 26 26 H 1.09002 * 110.50409 * 359.86085 * 15 13 11 27 27 H 1.09000 * 110.51295 * 122.43296 * 15 13 11 28 28 H 1.08999 * 110.37066 * 94.92082 * 16 15 13 29 29 H 1.08995 * 110.37201 * 217.25560 * 16 15 13 30 30 H 1.09007 * 110.36924 * 200.73956 * 18 17 16 31 31 H 1.08990 * 110.46951 * 78.44479 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1916 1.2098 -0.2863 5 6 1.5057 2.3618 0.3682 6 7 0.3759 2.3091 1.0372 7 14 2.2450 4.0156 -0.0877 8 1 1.6378 4.4970 -1.3545 9 1 1.9729 4.9948 0.9951 10 1 3.7120 3.8698 -0.2660 11 6 2.1390 -1.1671 0.0005 12 8 3.3472 -1.1698 0.1066 13 6 1.3913 -2.4690 -0.1309 14 6 0.4252 -2.6515 1.0414 15 6 2.3786 -3.6550 -0.2085 16 6 2.0979 -4.2916 -1.5878 17 8 0.7416 -3.9004 -1.9033 18 6 0.6298 -2.5261 -1.4738 19 1 -0.3634 0.0234 1.0274 20 1 -0.3633 0.8780 -0.5341 21 1 -0.3632 -0.9015 -0.4934 22 1 -0.0745 3.1291 1.2940 23 1 0.9895 -2.7037 1.9725 24 1 -0.2626 -1.8068 1.0803 25 1 -0.1395 -3.5740 0.9066 26 1 3.4075 -3.2994 -0.1543 27 1 2.1800 -4.3701 0.5898 28 1 2.7886 -3.8996 -2.3343 29 1 2.1783 -5.3770 -1.5281 30 1 -0.4167 -2.2579 -1.3283 31 1 1.0937 -1.8604 -2.2016 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307711079.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:40 Heat of formation + Delta-G solvation = -86.227261 kcal Electronic energy + Delta-G solvation = -15164.723389 eV Core-core repulsion = 12639.119612 eV Total energy + Delta-G solvation = -2525.603777 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.59658 -39.23184 -36.79109 -34.72767 -33.37319 -30.78878 -28.14182 -27.56653 -26.69443 -23.67511 -23.03724 -20.06036 -18.98648 -18.05687 -17.16636 -16.90624 -16.31198 -16.03429 -15.63607 -15.34593 -15.01069 -14.28509 -13.86215 -13.47187 -13.38947 -13.24294 -12.95821 -12.74802 -12.59979 -12.31811 -12.19450 -12.05609 -11.71998 -11.64888 -10.99990 -10.75292 -10.27722 -9.75819 -8.38041 -5.97569 1.34380 1.39928 1.52163 1.95258 2.24477 2.81216 3.03469 3.17273 3.48841 3.83436 3.87711 4.14086 4.24214 4.29608 4.44494 4.62009 4.75140 4.78370 4.85318 4.92745 4.97806 5.03325 5.18470 5.23759 5.38615 5.42747 5.73980 6.04681 6.44506 7.13043 7.43864 7.98791 8.64220 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051505 B = 0.009389 C = 0.008933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.506580 B = 2981.394442 C = 3133.631900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.455 5.455 3 C -0.349 4.349 4 H 0.071 0.929 5 C 0.000 4.000 6 N -0.890 5.890 7 Si 0.988 3.012 8 H -0.264 1.264 9 H -0.273 1.273 10 H -0.277 1.277 11 C 0.444 3.556 12 O -0.633 6.633 13 C -0.103 4.103 14 C -0.139 4.139 15 C -0.141 4.141 16 C 0.048 3.952 17 O -0.380 6.380 18 C 0.064 3.936 19 H 0.049 0.951 20 H 0.054 0.946 21 H 0.076 0.924 22 H 0.275 0.725 23 H 0.049 0.951 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.914 -8.195 -2.973 9.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.172 5.172 3 C -0.477 4.477 4 H 0.089 0.911 5 C -0.202 4.202 6 N -0.528 5.528 7 Si 0.811 3.189 8 H -0.189 1.189 9 H -0.198 1.198 10 H -0.202 1.202 11 C 0.233 3.767 12 O -0.522 6.522 13 C -0.107 4.107 14 C -0.196 4.196 15 C -0.179 4.179 16 C -0.028 4.028 17 O -0.299 6.299 18 C -0.013 4.013 19 H 0.068 0.932 20 H 0.073 0.927 21 H 0.094 0.906 22 H 0.085 0.915 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.138 0.862 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.678 -8.157 -2.936 9.417 hybrid contribution 0.725 1.313 0.180 1.511 sum -2.953 -6.844 -2.756 7.947 Atomic orbital electron populations 1.21864 0.79407 1.00588 1.01236 1.43788 1.06770 1.04498 1.62144 1.19643 0.97056 0.84904 1.46081 0.91134 1.26024 0.96971 1.02589 0.94648 1.70101 1.18324 1.30064 1.34303 0.85007 0.78315 0.77043 0.78510 1.18912 1.19821 1.20190 1.20639 0.87693 0.85771 0.82599 1.90434 1.16656 1.87454 1.57621 1.21966 0.97105 0.92805 0.98837 1.22050 0.98279 1.04061 0.95255 1.22967 0.99888 0.95576 0.99420 1.23581 0.83197 1.01786 0.94244 1.89081 1.30574 1.26675 1.83526 1.23556 1.01647 0.83978 0.92147 0.93210 0.92733 0.90588 0.91523 0.93150 0.90921 0.88899 0.91006 0.88521 0.92818 0.85781 0.86189 0.93657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.85 6.97 127.77 0.89 5.74 16 2 N -0.45 -23.60 3.02 -658.88 -1.99 -25.59 16 3 C -0.35 -20.05 9.32 84.04 0.78 -19.26 16 4 H 0.07 4.37 7.42 -2.91 -0.02 4.35 16 5 C 0.00 0.01 4.99 84.93 0.42 0.43 16 6 N -0.89 -46.75 10.71 21.66 0.23 -46.52 16 7 Si 0.99 42.38 29.59 68.60 2.03 44.41 16 8 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 9 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 C 0.44 22.08 6.34 87.66 0.56 22.64 16 12 O -0.63 -36.68 14.98 -3.06 -0.05 -36.72 16 13 C -0.10 -3.80 0.68 -51.91 -0.04 -3.84 16 14 C -0.14 -4.39 7.98 71.98 0.57 -3.81 16 15 C -0.14 -4.58 6.31 31.61 0.20 -4.38 16 16 C 0.05 1.33 7.65 72.48 0.55 1.88 16 17 O -0.38 -11.65 11.65 -148.98 -1.74 -13.39 16 18 C 0.06 2.09 5.53 72.49 0.40 2.49 16 19 H 0.05 2.24 6.84 -2.39 -0.02 2.22 16 20 H 0.05 2.51 6.85 -2.39 -0.02 2.50 16 21 H 0.08 2.66 3.19 -2.39 -0.01 2.65 16 22 H 0.27 13.46 8.31 -92.70 -0.77 12.69 16 23 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.07 2.34 4.51 -2.39 -0.01 2.33 16 25 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.07 2.77 6.51 -2.39 -0.02 2.76 16 27 H 0.10 2.64 7.73 -2.39 -0.02 2.62 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 29 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.12 3.38 6.11 -2.38 -0.01 3.37 16 31 H 0.05 1.64 7.86 -2.39 -0.02 1.63 16 Total: -1.00 -66.83 244.94 3.97 -62.86 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 1.13 Total: 13.07 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 4.35 Total: 1.88 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -1.76 Total: -72.11 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -1.78 Total: -50.11 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -66.83 3.97 -62.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307711079.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.365 kcal (2) G-P(sol) polarization free energy of solvation -66.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds