Wall clock time and date at job start Sun Mar 29 2020 21:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47711 * 2 1 4 4 C 1.53004 * 109.47070 * 120.00187 * 2 1 3 5 5 C 1.50701 * 109.47211 * 185.00010 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31523 * 119.99908 * 179.72112 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 359.71709 * 7 5 4 10 10 H 1.48500 * 109.47210 * 90.00069 * 9 7 5 11 11 H 1.48504 * 109.47424 * 210.00300 * 9 7 5 12 12 H 1.48502 * 109.46888 * 330.00390 * 9 7 5 13 13 S 1.81004 * 109.47052 * 239.99698 * 2 1 3 14 14 C 1.76199 * 100.00092 * 65.00100 * 13 2 1 15 15 N 1.31123 * 125.71897 * 179.97438 * 14 13 2 16 16 C 1.34701 * 108.59831 * 179.97438 * 15 14 13 17 17 C 1.34102 * 107.81369 * 0.02562 * 16 15 14 18 18 O 1.34259 * 125.71932 * 359.69442 * 14 13 2 19 19 H 1.09000 * 109.46991 * 300.00620 * 1 2 3 20 20 H 1.09004 * 109.46837 * 59.99882 * 1 2 3 21 21 H 1.08998 * 109.47711 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47211 * 64.99037 * 4 2 1 23 23 H 1.09007 * 109.46376 * 304.99579 * 4 2 1 24 24 H 0.96995 * 120.00181 * 179.97438 * 8 7 5 25 25 H 1.07998 * 126.09102 * 179.97438 * 16 15 14 26 26 H 1.07999 * 126.35029 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2307 -1.1981 2.3551 8 7 5.5419 -1.1100 2.4076 9 14 3.3018 -2.1131 3.6927 10 1 3.1647 -3.5418 3.3115 11 1 4.0487 -2.0116 4.9722 12 1 1.9534 -1.5133 3.8578 13 16 2.1333 -0.8533 -1.4779 14 6 1.5439 0.2421 -2.7258 15 7 1.7114 0.0919 -4.0176 16 6 1.1225 1.1252 -4.6501 17 6 0.5838 1.9240 -3.7173 18 8 0.8435 1.3677 -2.5136 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.7515 -1.7715 1.2057 23 1 1.6053 -0.2617 2.1370 24 1 6.0266 -1.5199 3.1411 25 1 1.0907 1.2826 -5.7181 26 1 0.0392 2.8394 -3.8956 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308067417.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:08 Heat of formation + Delta-G solvation = -7.642723 kcal Electronic energy + Delta-G solvation = -11838.005592 eV Core-core repulsion = 9622.729273 eV Total energy + Delta-G solvation = -2215.276319 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.10294 -36.62936 -35.63298 -34.17869 -31.15721 -29.86751 -25.02608 -24.27099 -23.48737 -22.11225 -19.49302 -18.92135 -17.70713 -17.34020 -16.52350 -16.37367 -15.58041 -14.87498 -14.38003 -14.14987 -13.95796 -13.46816 -13.25266 -12.73834 -12.50864 -12.39467 -11.78800 -11.70469 -11.61652 -11.48537 -11.20285 -10.74862 -10.64533 -8.57570 -8.25563 -6.31686 0.04756 0.39089 0.97817 1.40112 1.40456 1.51205 1.67336 2.37699 2.46076 3.09492 3.89532 3.93275 4.04556 4.11392 4.41085 4.51033 4.82000 4.86481 4.90359 5.05430 5.17797 5.25893 5.29060 5.58457 6.26134 6.59718 6.76205 7.31991 8.90097 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.059386 B = 0.007972 C = 0.007486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.374777 B = 3511.322599 C = 3739.463618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 H 0.083 0.917 4 C 0.004 3.996 5 C -0.532 4.532 6 H 0.041 0.959 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.944 3.056 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.237 1.237 13 S 0.038 5.962 14 C 0.151 3.849 15 N -0.507 5.507 16 C -0.054 4.054 17 C -0.071 4.071 18 O -0.209 6.209 19 H 0.085 0.915 20 H 0.060 0.940 21 H 0.073 0.927 22 H 0.032 0.968 23 H 0.055 0.945 24 H 0.266 0.734 25 H 0.218 0.782 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.012 4.879 -7.973 16.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.197 4.197 3 H 0.101 0.899 4 C -0.035 4.035 5 C -0.570 4.570 6 H 0.059 0.941 7 C -0.188 4.188 8 N -0.588 5.588 9 Si 0.767 3.233 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.160 1.160 13 S 0.270 5.730 14 C -0.162 4.162 15 N -0.242 5.242 16 C -0.193 4.193 17 C -0.145 4.145 18 O -0.097 6.097 19 H 0.104 0.896 20 H 0.079 0.921 21 H 0.092 0.908 22 H 0.050 0.950 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.234 0.766 26 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -12.926 3.310 -8.159 15.640 hybrid contribution -0.522 1.315 0.795 1.622 sum -13.447 4.625 -7.364 16.014 Atomic orbital electron populations 1.22133 0.90755 1.03636 1.03334 1.23499 0.99858 1.01865 0.94430 0.89885 1.19474 0.94891 0.96427 0.92671 1.21405 0.91689 1.34845 1.09107 0.94102 1.25951 0.95495 0.96798 1.00575 1.70070 1.08619 1.46559 1.33564 0.85754 0.80134 0.79428 0.77983 1.19453 1.21291 1.15971 1.86788 1.67922 1.25335 0.92978 1.28582 0.98947 0.91045 0.97613 1.70856 1.23471 1.27053 1.02808 1.24027 1.00501 0.91561 1.03217 1.26004 1.05400 1.02708 0.80401 1.84771 1.56797 1.32758 1.35407 0.89583 0.92070 0.90830 0.95018 0.92732 0.92520 0.76583 0.72063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.01 71.98 0.65 -3.37 15 2 C -0.07 -2.54 2.31 30.59 0.07 -2.47 15 3 H 0.08 3.28 8.14 -2.40 -0.02 3.26 15 4 C 0.00 0.18 3.51 29.85 0.10 0.29 15 5 C -0.53 -29.45 9.09 25.60 0.23 -29.22 15 6 H 0.04 2.53 7.84 -2.91 -0.02 2.51 15 7 C 0.01 0.52 5.47 84.65 0.46 0.98 15 8 N -0.95 -58.80 13.96 21.45 0.30 -58.50 15 9 Si 0.94 42.39 27.46 68.60 1.88 44.27 15 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 11 H -0.29 -12.84 7.11 99.48 0.71 -12.14 15 12 H -0.24 -9.47 6.55 99.48 0.65 -8.82 15 13 S 0.04 1.52 21.06 -56.49 -1.19 0.33 15 14 C 0.15 5.53 8.01 130.35 1.04 6.57 15 15 N -0.51 -18.08 11.35 -312.11 -3.54 -21.62 15 16 C -0.05 -1.35 11.88 83.31 0.99 -0.36 15 17 C -0.07 -1.57 12.16 66.88 0.81 -0.75 15 18 O -0.21 -6.47 8.42 -10.33 -0.09 -6.56 15 19 H 0.09 2.15 8.14 -2.39 -0.02 2.13 15 20 H 0.06 1.68 5.93 -2.38 -0.01 1.66 15 21 H 0.07 1.99 8.14 -2.39 -0.02 1.97 15 22 H 0.03 1.35 7.56 -2.39 -0.02 1.33 15 23 H 0.05 2.25 7.21 -2.38 -0.02 2.23 15 24 H 0.27 15.42 8.31 -92.71 -0.77 14.65 15 25 H 0.22 3.54 8.06 -2.91 -0.02 3.52 15 26 H 0.26 2.59 8.06 -2.91 -0.02 2.56 15 Total: -1.00 -69.48 241.86 2.85 -66.63 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: 1.12 Total: 3.78 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: 4.37 Total: -28.33 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -3.24 Total: -80.12 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.09 Total: -6.56 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.88 Total: 44.27 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -1.19 Total: 0.33 kcal Total: -69.48 2.85 -66.63 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308067417.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.989 kcal (2) G-P(sol) polarization free energy of solvation -69.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds