Wall clock time and date at job start Sun Mar 29 2020 22:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 120.00033 * 2 1 4 4 H 1.48506 * 109.46828 * 269.99823 * 3 2 1 5 5 H 1.48508 * 109.47191 * 29.99599 * 3 2 1 6 6 H 1.48499 * 109.47437 * 149.99648 * 3 2 1 7 7 C 1.38951 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99744 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99923 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00108 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99800 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00161 * 179.97438 * 10 9 7 13 13 C 1.53000 * 109.46912 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47060 * 179.97438 * 13 12 10 15 15 H 1.09001 * 110.80472 * 308.63118 * 14 13 12 16 16 C 1.54808 * 110.91003 * 185.00108 * 14 13 12 17 17 C 1.54106 * 104.19004 * 220.92095 * 16 14 13 18 18 O 1.43741 * 107.29185 * 357.96946 * 17 16 14 19 19 C 1.44389 * 106.97795 * 26.51336 * 18 17 16 20 20 H 0.96996 * 119.99812 * 0.02562 * 1 2 3 21 21 H 0.97005 * 120.00430 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.46980 * 59.99654 * 12 10 9 23 23 H 1.08992 * 109.47158 * 299.99760 * 12 10 9 24 24 H 1.09002 * 109.47398 * 300.00078 * 13 12 10 25 25 H 1.09001 * 109.47194 * 60.00258 * 13 12 10 26 26 H 1.09000 * 110.48816 * 339.60190 * 16 14 13 27 27 H 1.09005 * 110.48420 * 102.11135 * 16 14 13 28 28 H 1.08994 * 109.87872 * 117.39414 * 17 16 14 29 29 H 1.09004 * 109.87746 * 238.54857 * 17 16 14 30 30 H 1.08990 * 110.61836 * 201.43775 * 19 18 17 31 31 H 1.09003 * 110.61553 * 78.43596 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4002 5 1 1.4456 2.6528 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 6 2.2381 -6.0258 0.0004 14 6 1.4731 -7.3508 0.0016 15 1 0.7295 -7.3678 0.7984 16 6 2.4447 -8.5496 0.1269 17 6 1.8796 -9.5977 -0.8514 18 8 0.6806 -9.0471 -1.4217 19 6 0.8137 -7.6101 -1.3770 20 1 -0.4850 0.8400 -0.0004 21 1 0.3534 -2.3906 0.0005 22 1 0.6168 -4.9208 -0.8886 23 1 0.6176 -4.9205 0.8913 24 1 2.8641 -5.9681 -0.8901 25 1 2.8654 -5.9681 0.8899 26 1 3.4523 -8.2565 -0.1680 27 1 2.4438 -8.9364 1.1460 28 1 2.6059 -9.7992 -1.6388 29 1 1.6465 -10.5175 -0.3151 30 1 -0.1644 -7.1322 -1.4305 31 1 1.4583 -7.2591 -2.1829 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308156937.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:45 Heat of formation + Delta-G solvation = -128.053291 kcal Electronic energy + Delta-G solvation = -13936.041862 eV Core-core repulsion = 11408.624372 eV Total energy + Delta-G solvation = -2527.417490 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.58842 -39.89399 -36.15331 -35.25190 -33.28742 -31.72386 -29.56974 -27.13674 -24.98112 -23.19214 -21.32376 -20.87259 -19.85512 -17.76683 -17.42462 -16.65388 -16.50660 -16.32249 -15.79753 -15.73507 -14.74977 -14.47121 -13.96734 -13.73855 -13.49595 -13.06978 -12.89480 -12.46578 -12.41183 -12.23594 -12.13539 -11.85262 -11.57936 -11.52325 -11.36890 -10.61044 -10.35086 -10.02938 -8.47921 -5.97175 1.37449 1.41223 1.54150 2.05085 2.29645 2.99161 3.19827 3.27636 3.62104 3.86229 4.02428 4.16721 4.24311 4.37009 4.42301 4.53034 4.72478 4.78840 4.86598 4.90762 4.92372 5.09045 5.14458 5.28776 5.40015 5.42839 5.93937 5.99198 6.57918 7.10876 7.55462 8.10689 8.69486 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.081325 B = 0.005297 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.215183 B = 5285.051001 C = 5493.977782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.339 4.339 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.433 3.567 11 O -0.639 6.639 12 C -0.121 4.121 13 C -0.078 4.078 14 C -0.115 4.115 15 H 0.096 0.904 16 C -0.151 4.151 17 C 0.043 3.957 18 O -0.402 6.402 19 C 0.046 3.954 20 H 0.278 0.722 21 H 0.397 0.603 22 H 0.099 0.901 23 H 0.101 0.899 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.684 -13.783 -0.125 13.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.468 4.468 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.222 3.778 11 O -0.527 6.527 12 C -0.161 4.161 13 C -0.116 4.116 14 C -0.133 4.133 15 H 0.114 0.886 16 C -0.189 4.189 17 C -0.034 4.034 18 O -0.322 6.322 19 C -0.030 4.030 20 H 0.088 0.912 21 H 0.231 0.769 22 H 0.117 0.883 23 H 0.119 0.881 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.211 -13.746 -0.206 13.749 hybrid contribution 0.138 1.147 0.042 1.156 sum -0.073 -12.599 -0.164 12.601 Atomic orbital electron populations 1.69673 1.06863 1.29364 1.50194 1.26057 0.96543 1.02463 0.96144 0.84926 0.77886 0.76813 0.78694 1.19581 1.19441 1.19769 1.19698 0.92729 0.84247 1.50132 0.90396 1.42031 1.09404 1.04894 1.64700 1.21174 0.88205 0.86631 0.81799 1.90475 1.16257 1.88388 1.57605 1.21535 0.99005 0.90612 1.04915 1.21113 0.96702 0.91481 1.02307 1.22728 0.98042 0.93943 0.98636 0.88591 1.23010 0.99660 0.94835 1.01396 1.23301 0.86741 0.97492 0.95831 1.88821 1.40080 1.19994 1.83303 1.23771 1.02039 0.80973 0.96258 0.91238 0.76878 0.88276 0.88100 0.92684 0.92320 0.90561 0.89047 0.91973 0.88441 0.87923 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.87 13.05 21.66 0.28 -49.59 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 3 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.34 -19.42 9.68 84.04 0.81 -18.61 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -29.75 5.29 -306.99 -1.62 -31.37 16 10 C 0.43 20.64 7.78 87.66 0.68 21.32 16 11 O -0.64 -35.54 15.56 -3.07 -0.05 -35.59 16 12 C -0.12 -3.96 5.60 29.85 0.17 -3.79 16 13 C -0.08 -2.29 3.90 30.59 0.12 -2.17 16 14 C -0.11 -2.57 3.09 -9.49 -0.03 -2.60 16 15 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 16 C -0.15 -2.91 6.60 31.59 0.21 -2.70 16 17 C 0.04 0.81 7.70 72.36 0.56 1.37 16 18 O -0.40 -9.93 11.52 -148.98 -1.72 -11.64 16 19 C 0.05 1.05 6.63 72.67 0.48 1.53 16 20 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 21 H 0.40 19.48 7.90 -92.70 -0.73 18.74 16 22 H 0.10 2.83 7.73 -2.39 -0.02 2.81 16 23 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 24 H 0.05 1.77 7.94 -2.39 -0.02 1.76 16 25 H 0.06 1.87 8.10 -2.39 -0.02 1.85 16 26 H 0.08 1.50 7.86 -2.39 -0.02 1.48 16 27 H 0.09 1.47 8.14 -2.38 -0.02 1.46 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.06 1.39 7.93 -2.39 -0.02 1.37 16 Total: -1.00 -66.91 264.54 2.78 -64.13 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.39 Total: 24.88 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 3.47 Total: -5.84 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -1.34 Total: -80.96 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -1.76 Total: -47.23 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -66.91 2.78 -64.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308156937.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.920 kcal (2) G-P(sol) polarization free energy of solvation -66.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds