Wall clock time and date at job start Sun Mar 29 2020 21:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99725 * 2 1 4 4 H 1.48501 * 109.47104 * 239.99563 * 3 2 1 5 5 H 1.48495 * 109.47207 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46685 * 120.00170 * 3 2 1 7 7 C 1.37880 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99702 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47189 * 179.97438 * 9 7 2 11 11 N 1.46491 * 109.47277 * 179.97438 * 10 9 7 12 12 C 1.34780 * 120.00361 * 180.02562 * 11 10 9 13 13 O 1.21513 * 119.99577 * 0.02562 * 12 11 10 14 14 O 1.34640 * 120.00276 * 180.02562 * 12 11 10 15 15 C 1.45198 * 116.99989 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46884 * 179.97438 * 15 14 12 17 17 C 1.53003 * 117.49371 * 243.61793 * 16 15 14 18 18 C 1.53001 * 117.49608 * 174.99868 * 16 15 14 19 19 H 0.97001 * 120.00449 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.46885 * 60.00253 * 9 7 2 21 21 H 1.08999 * 109.47400 * 300.00304 * 9 7 2 22 22 H 1.09004 * 109.46995 * 60.00328 * 10 9 7 23 23 H 1.08999 * 109.47204 * 300.00432 * 10 9 7 24 24 H 0.97008 * 120.00168 * 0.02562 * 11 10 9 25 25 H 1.09002 * 109.47379 * 59.99593 * 15 14 12 26 26 H 1.09001 * 109.46782 * 299.99676 * 15 14 12 27 27 H 1.08995 * 115.55630 * 29.32479 * 16 15 14 28 28 H 1.08998 * 117.50656 * 0.02562 * 17 16 15 29 29 H 1.09001 * 117.49674 * 145.02590 * 17 16 15 30 30 H 1.09003 * 117.49710 * 214.97494 * 18 16 15 31 31 H 1.08998 * 117.50185 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 7 1.5129 -4.9308 -0.0012 12 6 2.1867 -6.0980 -0.0016 13 8 3.4019 -6.0980 -0.0020 14 8 1.5136 -7.2640 -0.0016 15 6 2.3044 -8.4818 -0.0015 16 6 1.3724 -9.6951 -0.0008 17 6 1.4208 -10.6223 1.2154 18 6 2.0142 -11.0789 -0.1189 19 1 -0.4851 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8904 21 1 0.6247 -2.5572 0.8896 22 1 2.8726 -3.6048 0.8878 23 1 2.8713 -3.6039 -0.8922 24 1 0.5428 -4.9308 -0.0005 25 1 2.9333 -8.5066 0.8885 26 1 2.9332 -8.5066 -0.8915 27 1 0.4059 -9.5459 -0.4821 28 1 2.1162 -10.3677 2.0151 29 1 0.4859 -11.0831 1.5344 30 1 1.4698 -11.8402 -0.6776 31 1 3.1004 -11.1249 -0.1975 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308178211.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:54 Heat of formation + Delta-G solvation = -73.976267 kcal Electronic energy + Delta-G solvation = -13477.957993 eV Core-core repulsion = 10952.885459 eV Total energy + Delta-G solvation = -2525.072534 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.08027 -37.78913 -36.10243 -34.81385 -32.88098 -29.81615 -27.68716 -24.76529 -22.67358 -21.52181 -20.88773 -20.72924 -18.26245 -16.91322 -16.39228 -16.18758 -15.30550 -14.62108 -14.43093 -14.09824 -13.89898 -12.97643 -12.93299 -12.28921 -11.82663 -11.50019 -11.24592 -11.09092 -10.89891 -10.80014 -10.67137 -10.36087 -10.25602 -10.05669 -9.64802 -9.32612 -8.62866 -8.39791 -6.10369 -4.13795 2.47519 3.21537 3.31158 3.35070 3.38301 3.51663 4.29833 4.42422 4.59820 4.62021 5.00104 5.04539 5.26639 5.31518 5.36164 5.44723 5.59979 5.82037 5.89587 6.21174 6.28968 6.56979 6.69557 6.84861 7.49354 7.58807 7.87006 7.93276 8.24854 8.75354 8.91954 9.50997 11.01203 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.101378 B = 0.004336 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 276.127351 B = 6456.402729 C = 6636.973625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.138 3.862 11 N -0.700 5.700 12 C 0.640 3.360 13 O -0.583 6.583 14 O -0.374 6.374 15 C 0.119 3.881 16 C -0.157 4.157 17 C -0.177 4.177 18 C -0.170 4.170 19 H 0.263 0.737 20 H 0.025 0.975 21 H 0.025 0.975 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.405 0.595 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.903 -17.619 0.363 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.357 5.357 12 C 0.392 3.608 13 O -0.473 6.473 14 O -0.289 6.289 15 C 0.044 3.956 16 C -0.176 4.176 17 C -0.214 4.214 18 C -0.207 4.207 19 H 0.073 0.927 20 H 0.043 0.957 21 H 0.043 0.957 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.239 0.761 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.135 0.865 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.368 -17.548 0.364 17.605 hybrid contribution 0.038 0.896 -0.001 0.896 sum 1.406 -16.652 0.363 16.715 Atomic orbital electron populations 1.69946 1.06102 1.27073 1.50073 1.24995 0.94907 0.99432 0.94908 0.86543 0.79487 0.82536 0.78796 1.20077 1.21233 1.20085 1.20981 0.93244 0.90213 1.51781 0.92180 1.19353 0.94236 0.90726 0.98206 1.21819 0.95893 0.79436 1.01168 1.45225 1.10854 1.03407 1.76260 1.18265 0.84364 0.81256 0.76898 1.90957 1.12456 1.87221 1.56664 1.86202 1.41042 1.14123 1.87487 1.22344 0.91683 0.79003 1.02586 1.22159 1.01771 0.89726 1.03910 1.23118 1.03226 1.03328 0.91719 1.22994 1.00940 0.96098 1.00670 0.92721 0.95661 0.95654 0.92235 0.92218 0.76112 0.91207 0.90882 0.86458 0.88452 0.88412 0.88182 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.14 2.95 5.61 -4.05 -0.02 2.93 16 11 N -0.70 -13.07 5.56 -65.28 -0.36 -13.44 16 12 C 0.64 12.06 8.75 54.06 0.47 12.53 16 13 O -0.58 -12.56 16.13 -19.28 -0.31 -12.87 16 14 O -0.37 -5.95 10.27 -40.32 -0.41 -6.36 16 15 C 0.12 1.52 5.76 37.16 0.21 1.73 16 16 C -0.16 -1.56 6.07 -90.62 -0.55 -2.11 16 17 C -0.18 -1.47 10.18 -26.73 -0.27 -1.74 16 18 C -0.17 -1.31 10.25 -26.73 -0.27 -1.58 16 19 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 20 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 21 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 23 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 24 H 0.40 6.72 8.58 -40.82 -0.35 6.37 16 25 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.10 0.80 8.03 -51.93 -0.42 0.38 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 276.18 15.07 4.16 4.16 Total: -1.00 -30.85 276.18 -6.72 -37.56 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -4.52 Total: 1.24 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -0.98 Total: -1.25 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.37 Total: -38.74 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.73 Total: -19.23 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.85 -6.72 -37.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308178211.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.412 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds