Wall clock time and date at job start Sun Mar 29 2020 22:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 119.99912 * 2 1 4 4 H 1.48503 * 109.46928 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47006 * 300.00282 * 3 2 1 6 6 H 1.48500 * 109.47108 * 60.00507 * 3 2 1 7 7 C 1.37880 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00288 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99344 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46333 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46691 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99761 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00282 * 179.97438 * 11 10 9 14 14 C 1.47471 * 125.62605 * 0.02562 * 13 11 10 15 15 C 1.54906 * 104.81210 * 204.06544 * 14 13 11 16 16 C 1.55156 * 101.61451 * 323.04512 * 15 14 13 17 17 H 1.09006 * 110.71879 * 276.93547 * 16 15 14 18 18 O 1.42905 * 110.71725 * 153.84666 * 16 15 14 19 19 C 1.47017 * 125.65425 * 180.02562 * 13 11 10 20 20 H 0.97003 * 119.99786 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47138 * 60.00638 * 9 7 2 22 22 H 1.09000 * 109.47158 * 300.00073 * 9 7 2 23 23 H 1.08998 * 109.47072 * 60.00494 * 10 9 7 24 24 H 1.08990 * 109.47495 * 299.99962 * 10 9 7 25 25 H 1.09008 * 110.34870 * 85.24673 * 14 13 11 26 26 H 1.09001 * 110.40581 * 322.91709 * 14 13 11 27 27 H 1.09002 * 111.00655 * 204.94912 * 15 14 13 28 28 H 1.09002 * 111.00329 * 81.13838 * 15 14 13 29 29 H 0.96702 * 113.99882 * 61.45072 * 18 16 15 30 30 H 1.08998 * 109.88206 * 59.55930 * 19 13 11 31 31 H 1.09004 * 110.01118 * 298.47023 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4918 -4.9671 0.0001 12 8 0.2789 -4.9671 0.0000 13 7 2.1656 -6.1344 -0.0003 14 6 3.6332 -6.2790 -0.0008 15 6 3.8929 -7.6786 -0.6118 16 6 2.7127 -8.4987 -0.0270 17 1 2.9463 -8.8470 0.9791 18 8 2.3910 -9.5998 -0.8792 19 6 1.5594 -7.4738 -0.0003 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8897 23 1 2.8719 -3.6043 0.8895 24 1 2.8719 -3.6043 -0.8904 25 1 4.0190 -6.2321 1.0176 26 1 4.0911 -5.5051 -0.6169 27 1 4.8502 -8.0791 -0.2782 28 1 3.8439 -7.6450 -1.7002 29 1 3.1122 -10.2340 -0.9916 30 1 0.9332 -7.5972 -0.8838 31 1 0.9611 -7.6124 0.9002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308179953.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:27 Heat of formation + Delta-G solvation = -94.245279 kcal Electronic energy + Delta-G solvation = -14043.298400 eV Core-core repulsion = 11517.346936 eV Total energy + Delta-G solvation = -2525.951464 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.82282 -37.83983 -35.54332 -33.46313 -31.24801 -30.42862 -28.72720 -25.66783 -23.36943 -21.72894 -20.82162 -18.79401 -17.88556 -17.00409 -15.86400 -15.52672 -14.95190 -14.40927 -14.39235 -14.13938 -13.85092 -13.12823 -12.48222 -12.15573 -12.02972 -11.91193 -11.72190 -11.12471 -11.02224 -10.93994 -10.57784 -10.24875 -9.95050 -9.64807 -9.18201 -9.01660 -8.44012 -8.30912 -5.95262 -3.99769 3.13046 3.22270 3.33171 3.40219 3.43489 3.94149 4.37236 4.42275 4.49081 4.80765 5.07947 5.23072 5.39456 5.39746 5.47177 5.57332 5.80071 5.84485 5.92178 6.21484 6.23584 6.51015 6.89217 7.33381 7.75536 7.81776 7.86952 8.08047 8.38877 8.73346 9.08794 9.63766 11.15804 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.071451 B = 0.005689 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.782624 B = 4920.173753 C = 5235.013963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.035 3.965 10 C -0.123 4.123 11 C 0.526 3.474 12 O -0.530 6.530 13 N -0.630 5.630 14 C 0.103 3.897 15 C -0.168 4.168 16 C 0.092 3.908 17 H 0.074 0.926 18 O -0.559 6.559 19 C 0.112 3.888 20 H 0.260 0.740 21 H 0.024 0.976 22 H 0.024 0.976 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.381 0.619 30 H 0.075 0.925 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.536 -16.532 0.130 19.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.163 4.163 11 C 0.317 3.683 12 O -0.405 6.405 13 N -0.369 5.369 14 C -0.020 4.020 15 C -0.206 4.206 16 C 0.033 3.967 17 H 0.092 0.908 18 O -0.365 6.365 19 C -0.011 4.011 20 H 0.070 0.930 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.228 0.772 30 H 0.094 0.906 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.077 -16.000 0.097 18.396 hybrid contribution 1.094 0.582 0.057 1.240 sum 10.171 -15.419 0.154 18.472 Atomic orbital electron populations 1.70012 1.06072 1.26477 1.50253 1.25029 0.94817 0.99236 0.95301 0.86532 0.79983 0.83831 0.77590 1.19753 1.21012 1.21007 1.21243 0.92944 0.90945 1.51312 0.92541 1.18935 0.93220 0.89372 0.98708 1.21853 1.00657 0.91375 1.02379 1.21385 0.88171 0.84297 0.74438 1.90685 1.14286 1.86872 1.48635 1.48694 1.06828 1.05216 1.76190 1.22215 0.81643 0.97129 1.01042 1.23538 0.98945 0.95910 1.02231 1.22797 0.94179 0.86579 0.93153 0.90799 1.86514 1.43299 1.36693 1.69964 1.21595 0.94864 0.81597 1.03061 0.92989 0.95759 0.95759 0.90244 0.90260 0.91210 0.89802 0.89709 0.89616 0.77172 0.90634 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.70 13.29 55.43 0.74 -26.96 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.73 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.53 -15.07 9.11 -34.44 -0.31 -15.39 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 10 C -0.12 -2.58 4.65 -27.88 -0.13 -2.71 16 11 C 0.53 10.87 7.85 -10.98 -0.09 10.79 16 12 O -0.53 -13.30 16.31 5.55 0.09 -13.21 16 13 N -0.63 -9.94 3.33 -170.49 -0.57 -10.51 16 14 C 0.10 1.14 6.69 -2.50 -0.02 1.13 16 15 C -0.17 -1.41 6.80 -24.58 -0.17 -1.58 16 16 C 0.09 0.90 4.33 -24.90 -0.11 0.79 16 17 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 18 O -0.56 -5.35 13.39 -35.23 -0.47 -5.82 16 19 C 0.11 1.57 6.64 -3.07 -0.02 1.55 16 20 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 21 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 22 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 23 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 24 H 0.08 1.52 7.85 -51.93 -0.41 1.11 16 25 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 26 H 0.08 0.90 7.48 -51.93 -0.39 0.51 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.38 1.73 9.11 45.56 0.42 2.14 16 30 H 0.08 1.19 8.06 -51.93 -0.42 0.78 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 266.56 15.07 4.02 4.02 Total: -1.00 -35.61 266.56 -5.99 -41.61 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: -3.72 Total: -2.88 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -1.06 Total: -2.98 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.17 Total: -37.47 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.38 Total: -19.03 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -35.61 -5.99 -41.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308179953.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.639 kcal (2) G-P(sol) polarization free energy of solvation -35.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds