Wall clock time and date at job start Sun Mar 29 2020 22:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 119.99912 * 2 1 4 4 H 1.48503 * 109.46928 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47006 * 300.00282 * 3 2 1 6 6 H 1.48500 * 109.47108 * 60.00507 * 3 2 1 7 7 C 1.37880 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00288 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99344 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46333 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46691 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99761 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00282 * 179.97438 * 11 10 9 14 14 C 1.47471 * 125.62605 * 0.02562 * 13 11 10 15 15 C 1.54906 * 104.81210 * 204.06544 * 14 13 11 16 16 C 1.55156 * 101.61451 * 323.04512 * 15 14 13 17 17 H 1.09006 * 110.71879 * 276.93547 * 16 15 14 18 18 O 1.42905 * 110.71725 * 153.84666 * 16 15 14 19 19 C 1.47017 * 125.65425 * 180.02562 * 13 11 10 20 20 H 0.97003 * 119.99786 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47138 * 60.00638 * 9 7 2 22 22 H 1.09000 * 109.47158 * 300.00073 * 9 7 2 23 23 H 1.08998 * 109.47072 * 60.00494 * 10 9 7 24 24 H 1.08990 * 109.47495 * 299.99962 * 10 9 7 25 25 H 1.09008 * 110.34870 * 85.24673 * 14 13 11 26 26 H 1.09001 * 110.40581 * 322.91709 * 14 13 11 27 27 H 1.09002 * 111.00655 * 204.94912 * 15 14 13 28 28 H 1.09002 * 111.00329 * 81.13838 * 15 14 13 29 29 H 0.96702 * 113.99882 * 61.45072 * 18 16 15 30 30 H 1.08998 * 109.88206 * 59.55930 * 19 13 11 31 31 H 1.09004 * 110.01118 * 298.47023 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4918 -4.9671 0.0001 12 8 0.2789 -4.9671 0.0000 13 7 2.1656 -6.1344 -0.0003 14 6 3.6332 -6.2790 -0.0008 15 6 3.8929 -7.6786 -0.6118 16 6 2.7127 -8.4987 -0.0270 17 1 2.9463 -8.8470 0.9791 18 8 2.3910 -9.5998 -0.8792 19 6 1.5594 -7.4738 -0.0003 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8897 23 1 2.8719 -3.6043 0.8895 24 1 2.8719 -3.6043 -0.8904 25 1 4.0190 -6.2321 1.0176 26 1 4.0911 -5.5051 -0.6169 27 1 4.8502 -8.0791 -0.2782 28 1 3.8439 -7.6450 -1.7002 29 1 3.1122 -10.2340 -0.9916 30 1 0.9332 -7.5972 -0.8838 31 1 0.9611 -7.6124 0.9002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308179953.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:27 Heat of formation + Delta-G solvation = -122.754647 kcal Electronic energy + Delta-G solvation = -14044.534659 eV Core-core repulsion = 11517.346936 eV Total energy + Delta-G solvation = -2527.187723 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.12347 -39.05632 -36.55039 -35.60121 -33.14669 -31.61812 -29.85927 -27.58769 -24.74102 -23.20069 -21.98945 -20.19566 -18.91976 -18.62382 -17.67650 -16.81640 -16.54745 -16.27647 -15.46854 -15.10239 -14.89878 -14.56092 -14.22944 -13.85699 -13.57131 -13.14816 -12.84652 -12.79638 -12.54715 -12.44220 -11.96360 -11.78404 -11.64873 -11.30185 -10.95036 -10.80517 -10.58769 -9.73525 -8.18608 -6.33278 1.42545 1.44464 1.57747 1.61130 1.88368 2.43130 3.14606 3.18866 3.54683 3.60379 3.96071 4.08116 4.27686 4.43024 4.46553 4.49071 4.63548 4.75706 4.84109 4.93535 5.02301 5.19895 5.34147 5.48974 5.59192 5.83243 6.15422 6.41756 6.85078 6.90914 7.17170 7.37346 8.94662 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.071451 B = 0.005689 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.782624 B = 4920.173753 C = 5235.013963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.008 4.008 3 Si 0.977 3.023 4 H -0.250 1.250 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.040 3.960 10 C -0.108 4.108 11 C 0.521 3.479 12 O -0.593 6.593 13 N -0.623 5.623 14 C 0.088 3.912 15 C -0.152 4.152 16 C 0.106 3.894 17 H 0.103 0.897 18 O -0.579 6.579 19 C 0.100 3.900 20 H 0.263 0.737 21 H -0.020 1.020 22 H -0.018 1.018 23 H 0.106 0.894 24 H 0.104 0.896 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.128 0.872 28 H 0.078 0.922 29 H 0.405 0.595 30 H 0.048 0.952 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.268 -17.246 0.386 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.801 3.199 4 H -0.174 1.174 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.097 0.903 9 C 0.002 3.998 10 C -0.147 4.147 11 C 0.312 3.688 12 O -0.473 6.473 13 N -0.358 5.358 14 C -0.033 4.033 15 C -0.190 4.190 16 C 0.046 3.954 17 H 0.120 0.880 18 O -0.388 6.388 19 C -0.024 4.024 20 H 0.072 0.928 21 H -0.001 1.001 22 H 0.000 1.000 23 H 0.124 0.876 24 H 0.122 0.878 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.146 0.854 28 H 0.097 0.903 29 H 0.256 0.744 30 H 0.067 0.933 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.900 -16.784 0.348 21.172 hybrid contribution -0.082 0.692 -0.035 0.698 sum 12.818 -16.092 0.312 20.576 Atomic orbital electron populations 1.70197 1.08454 1.27807 1.51504 1.26178 0.95715 1.04090 0.94540 0.85227 0.79344 0.77836 0.77538 1.17375 1.20674 1.20595 1.21719 0.94052 0.91355 1.50783 0.90341 1.18727 0.93751 0.92624 0.94651 1.21587 0.99156 0.89281 1.04725 1.21247 0.87386 0.85778 0.74424 1.90654 1.16811 1.87921 1.51950 1.48587 1.09300 1.04438 1.73476 1.22700 0.78145 0.99311 1.03119 1.23525 1.00217 0.93622 1.01658 1.22678 0.92026 0.85830 0.94826 0.87985 1.86463 1.45139 1.37174 1.70028 1.21791 0.96851 0.82229 1.01481 0.92833 1.00143 0.99974 0.87585 0.87831 0.88710 0.89110 0.85392 0.90314 0.74369 0.93328 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.52 13.29 21.45 0.28 -60.24 16 2 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 3 Si 0.98 44.48 29.54 68.60 2.03 46.50 16 4 H -0.25 -10.41 7.11 99.48 0.71 -9.71 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.54 -31.17 9.11 25.60 0.23 -30.93 16 8 H 0.08 4.08 7.74 -2.92 -0.02 4.06 16 9 C 0.04 2.30 4.26 29.85 0.13 2.43 16 10 C -0.11 -4.53 4.65 29.85 0.14 -4.39 16 11 C 0.52 22.08 7.85 87.66 0.69 22.77 16 12 O -0.59 -31.79 16.31 -3.04 -0.05 -31.84 16 13 N -0.62 -19.14 3.33 -811.69 -2.70 -21.84 16 14 C 0.09 1.65 6.69 86.85 0.58 2.23 16 15 C -0.15 -1.90 6.80 31.98 0.22 -1.69 16 16 C 0.11 1.72 4.33 31.78 0.14 1.86 16 17 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 18 O -0.58 -9.50 13.39 -148.98 -1.99 -11.50 16 19 C 0.10 2.78 6.64 86.73 0.58 3.35 16 20 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 21 H -0.02 -1.30 8.10 -2.39 -0.02 -1.31 16 22 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 23 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 24 H 0.10 3.81 7.85 -2.39 -0.02 3.80 16 25 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.09 1.61 7.48 -2.39 -0.02 1.60 16 27 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 29 H 0.40 2.18 9.11 -74.06 -0.67 1.50 16 30 H 0.05 1.60 8.06 -2.39 -0.02 1.58 16 31 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -82.88 266.56 1.17 -81.71 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: 0.44 Total: 1.57 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 3.16 Total: -4.37 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -2.42 Total: -82.08 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -2.04 Total: -43.34 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -82.88 1.17 -81.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308179953.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.045 kcal (2) G-P(sol) polarization free energy of solvation -82.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds