Wall clock time and date at job start Sun Mar 29 2020 22:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00172 * 2 1 4 4 H 1.48498 * 109.47356 * 270.00416 * 3 2 1 5 5 H 1.48501 * 109.46763 * 30.00448 * 3 2 1 6 6 H 1.48499 * 109.46941 * 150.00172 * 3 2 1 7 7 C 1.37882 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00152 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46937 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46783 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00420 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99598 * 180.02562 * 11 10 9 14 14 C 1.47052 * 120.80772 * 180.02562 * 13 11 10 15 15 C 1.53339 * 108.41001 * 129.60956 * 14 13 11 16 16 C 1.53201 * 109.02219 * 52.73191 * 15 14 13 17 17 C 1.53069 * 109.39881 * 300.27338 * 16 15 14 18 18 O 1.42127 * 120.80971 * 359.97438 * 13 11 10 19 19 H 0.97000 * 119.99869 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47258 * 60.00586 * 9 7 2 21 21 H 1.08995 * 109.47147 * 300.00523 * 9 7 2 22 22 H 1.08997 * 109.46724 * 60.00488 * 10 9 7 23 23 H 1.08998 * 109.46632 * 300.00239 * 10 9 7 24 24 H 1.08998 * 109.67852 * 249.33726 * 14 13 11 25 25 H 1.09004 * 109.68355 * 9.83829 * 14 13 11 26 26 H 1.09002 * 109.55155 * 172.59572 * 15 14 13 27 27 H 1.09000 * 109.54478 * 292.87724 * 15 14 13 28 28 H 1.09001 * 109.51924 * 180.27833 * 16 15 14 29 29 H 1.09002 * 109.46562 * 60.23651 * 16 15 14 30 30 H 1.09002 * 109.49458 * 299.99500 * 17 16 15 31 31 H 1.08996 * 109.49215 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 8 0.2789 -4.9672 -0.0011 13 7 2.1656 -6.1345 -0.0008 14 6 1.4484 -7.4182 -0.0019 15 6 2.0232 -8.2931 -1.1224 16 6 3.5451 -8.3709 -0.9643 17 6 4.1374 -6.9618 -1.0457 18 8 3.5867 -6.1545 -0.0003 19 1 -0.4850 0.8401 0.0004 20 1 0.6241 -2.5568 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 2.8718 -3.6044 0.8895 23 1 2.8719 -3.6043 -0.8905 24 1 1.5845 -7.9156 0.9584 25 1 0.3867 -7.2455 -0.1784 26 1 1.5982 -9.2947 -1.0576 27 1 1.7792 -7.8537 -2.0896 28 1 3.9629 -8.9873 -1.7602 29 1 3.7877 -8.8119 0.0026 30 1 3.8942 -6.5203 -2.0122 31 1 5.2202 -7.0153 -0.9329 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308186760.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:24 Heat of formation + Delta-G solvation = -45.558595 kcal Electronic energy + Delta-G solvation = -14289.206450 eV Core-core repulsion = 11765.366199 eV Total energy + Delta-G solvation = -2523.840251 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.65865 -37.80907 -34.04217 -33.34754 -32.68216 -30.88958 -27.54316 -25.61364 -24.33832 -22.02724 -20.46657 -19.41388 -17.14613 -16.79781 -15.85525 -15.42206 -15.18306 -14.50661 -14.41542 -14.18760 -13.55011 -13.29119 -13.13483 -12.16454 -12.11863 -11.44564 -11.34359 -11.10712 -10.90166 -10.87330 -10.55522 -10.45544 -9.89525 -9.63298 -9.19222 -9.00143 -8.59883 -8.27718 -5.92209 -3.95993 2.13406 3.10356 3.36602 3.42399 3.45814 4.22409 4.52075 4.55621 4.63405 4.65043 5.12704 5.20835 5.40095 5.42804 5.47690 5.56269 5.62925 5.76254 5.89681 5.99467 6.33299 6.40351 6.72363 6.95115 7.67817 7.78926 7.90330 8.10796 8.41464 8.62025 9.12038 9.67206 11.18945 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059242 B = 0.006381 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.527779 B = 4387.246528 C = 4750.426121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.034 3.966 10 C -0.120 4.120 11 C 0.533 3.467 12 O -0.520 6.520 13 N -0.490 5.490 14 C 0.100 3.900 15 C -0.139 4.139 16 C -0.151 4.151 17 C 0.027 3.973 18 O -0.140 6.140 19 H 0.260 0.740 20 H 0.023 0.977 21 H 0.024 0.976 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.675 -16.688 -2.267 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.003 4.003 10 C -0.160 4.160 11 C 0.326 3.674 12 O -0.395 6.395 13 N -0.273 5.273 14 C -0.021 4.021 15 C -0.178 4.178 16 C -0.189 4.189 17 C -0.051 4.051 18 O -0.144 6.144 19 H 0.070 0.930 20 H 0.041 0.959 21 H 0.042 0.958 22 H 0.102 0.898 23 H 0.098 0.902 24 H 0.088 0.912 25 H 0.123 0.877 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.960 -16.427 -2.116 17.966 hybrid contribution 0.696 0.616 -0.256 0.964 sum 7.656 -15.811 -2.371 17.727 Atomic orbital electron populations 1.70000 1.06057 1.26536 1.50411 1.25023 0.94824 0.99206 0.95345 0.86582 0.79807 0.83482 0.78033 1.20703 1.21235 1.19859 1.21225 0.93000 0.90939 1.51124 0.92539 1.18960 0.93239 0.89562 0.98554 1.21793 1.00425 0.90745 1.03010 1.21673 0.87726 0.84565 0.73479 1.90716 1.13435 1.85525 1.49809 1.50584 0.93580 1.06464 1.76678 1.21928 0.97964 0.83441 0.98743 1.21979 0.95677 1.00600 0.99512 1.22080 0.96187 0.97395 1.03254 1.23121 0.98619 0.90965 0.92368 1.90731 1.02011 1.70767 1.50859 0.92988 0.95884 0.95769 0.89764 0.90207 0.91183 0.87713 0.90164 0.91121 0.90490 0.90763 0.92069 0.87233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.84 13.29 55.43 0.74 -27.11 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -15.29 9.11 -34.44 -0.31 -15.60 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.96 4.26 -27.88 -0.12 0.84 16 10 C -0.12 -2.66 5.00 -27.88 -0.14 -2.80 16 11 C 0.53 11.13 7.80 -10.98 -0.09 11.05 16 12 O -0.52 -12.45 15.43 5.56 0.09 -12.37 16 13 N -0.49 -8.17 3.60 -59.73 -0.21 -8.39 16 14 C 0.10 1.31 6.62 -3.57 -0.02 1.29 16 15 C -0.14 -1.36 6.14 -26.45 -0.16 -1.53 16 16 C -0.15 -1.31 6.07 -26.59 -0.16 -1.47 16 17 C 0.03 0.29 7.08 37.19 0.26 0.55 16 18 O -0.14 -2.10 11.01 -11.73 -0.13 -2.23 16 19 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 20 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 21 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 22 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 23 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.10 1.48 7.07 -51.93 -0.37 1.12 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 264.32 15.07 3.98 3.98 Total: -1.00 -33.77 264.32 -5.95 -39.72 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -4.55 Total: -4.55 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -0.84 Total: -6.07 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.52 Total: -35.50 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.04 Total: -14.59 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.77 -5.95 -39.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308186760.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.841 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds