Wall clock time and date at job start Sun Mar 29 2020 22:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00172 * 2 1 4 4 H 1.48498 * 109.47356 * 270.00416 * 3 2 1 5 5 H 1.48501 * 109.46763 * 30.00448 * 3 2 1 6 6 H 1.48499 * 109.46941 * 150.00172 * 3 2 1 7 7 C 1.37882 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00152 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46937 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46783 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00420 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99598 * 180.02562 * 11 10 9 14 14 C 1.47052 * 120.80772 * 180.02562 * 13 11 10 15 15 C 1.53339 * 108.41001 * 129.60956 * 14 13 11 16 16 C 1.53201 * 109.02219 * 52.73191 * 15 14 13 17 17 C 1.53069 * 109.39881 * 300.27338 * 16 15 14 18 18 O 1.42127 * 120.80971 * 359.97438 * 13 11 10 19 19 H 0.97000 * 119.99869 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47258 * 60.00586 * 9 7 2 21 21 H 1.08995 * 109.47147 * 300.00523 * 9 7 2 22 22 H 1.08997 * 109.46724 * 60.00488 * 10 9 7 23 23 H 1.08998 * 109.46632 * 300.00239 * 10 9 7 24 24 H 1.08998 * 109.67852 * 249.33726 * 14 13 11 25 25 H 1.09004 * 109.68355 * 9.83829 * 14 13 11 26 26 H 1.09002 * 109.55155 * 172.59572 * 15 14 13 27 27 H 1.09000 * 109.54478 * 292.87724 * 15 14 13 28 28 H 1.09001 * 109.51924 * 180.27833 * 16 15 14 29 29 H 1.09002 * 109.46562 * 60.23651 * 16 15 14 30 30 H 1.09002 * 109.49458 * 299.99500 * 17 16 15 31 31 H 1.08996 * 109.49215 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 8 0.2789 -4.9672 -0.0011 13 7 2.1656 -6.1345 -0.0008 14 6 1.4484 -7.4182 -0.0019 15 6 2.0232 -8.2931 -1.1224 16 6 3.5451 -8.3709 -0.9643 17 6 4.1374 -6.9618 -1.0457 18 8 3.5867 -6.1545 -0.0003 19 1 -0.4850 0.8401 0.0004 20 1 0.6241 -2.5568 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 2.8718 -3.6044 0.8895 23 1 2.8719 -3.6043 -0.8905 24 1 1.5845 -7.9156 0.9584 25 1 0.3867 -7.2455 -0.1784 26 1 1.5982 -9.2947 -1.0576 27 1 1.7792 -7.8537 -2.0896 28 1 3.9629 -8.9873 -1.7602 29 1 3.7877 -8.8119 0.0026 30 1 3.8942 -6.5203 -2.0122 31 1 5.2202 -7.0153 -0.9329 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308186760.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:24 Heat of formation + Delta-G solvation = -68.585981 kcal Electronic energy + Delta-G solvation = -14290.204992 eV Core-core repulsion = 11765.366199 eV Total energy + Delta-G solvation = -2524.838794 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.05493 -39.14689 -35.66764 -34.88693 -33.93736 -32.91870 -28.90093 -27.33634 -25.47571 -23.74678 -21.84965 -20.69408 -18.99507 -17.97827 -17.81184 -16.83933 -16.48638 -16.17183 -15.59805 -15.26054 -15.17579 -14.58705 -14.25009 -14.10469 -13.79968 -13.25636 -12.81899 -12.50916 -12.30939 -12.13999 -11.96233 -11.73891 -11.64311 -11.47112 -11.32147 -10.76720 -10.56975 -9.90700 -8.18307 -6.32439 0.89267 1.42269 1.45332 1.47786 1.56658 2.42409 3.04991 3.14425 3.77698 3.83296 3.88155 4.05841 4.27993 4.41885 4.49062 4.51512 4.59012 4.77622 4.80223 4.96973 4.97944 5.08102 5.24554 5.44756 5.52158 5.60436 5.83599 6.17283 6.29711 6.83822 7.04702 7.37429 8.94554 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059242 B = 0.006381 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.527779 B = 4387.246528 C = 4750.426121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.042 3.958 10 C -0.108 4.108 11 C 0.530 3.470 12 O -0.566 6.566 13 N -0.483 5.483 14 C 0.092 3.908 15 C -0.134 4.134 16 C -0.145 4.145 17 C 0.015 3.985 18 O -0.153 6.153 19 H 0.264 0.736 20 H -0.014 1.014 21 H -0.014 1.014 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.290 -17.683 -2.604 20.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.181 1.181 7 C -0.583 4.583 8 H 0.090 0.910 9 C 0.004 3.996 10 C -0.147 4.147 11 C 0.322 3.678 12 O -0.445 6.445 13 N -0.263 5.263 14 C -0.028 4.028 15 C -0.172 4.172 16 C -0.183 4.183 17 C -0.062 4.062 18 O -0.157 6.157 19 H 0.073 0.927 20 H 0.005 0.995 21 H 0.004 0.996 22 H 0.114 0.886 23 H 0.114 0.886 24 H 0.106 0.894 25 H 0.105 0.895 26 H 0.128 0.872 27 H 0.079 0.921 28 H 0.124 0.876 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.628 -17.484 -2.459 20.110 hybrid contribution -0.070 0.812 -0.166 0.832 sum 9.558 -16.672 -2.624 19.396 Atomic orbital electron populations 1.70170 1.08260 1.27902 1.51327 1.26130 0.95761 1.03887 0.94467 0.85295 0.78604 0.77584 0.78603 1.19543 1.20910 1.18124 1.21672 0.93886 0.91634 1.51100 0.90967 1.18732 0.93596 0.92257 0.94967 1.21503 0.99108 0.89865 1.04270 1.21215 0.87112 0.85577 0.73890 1.90693 1.15055 1.86527 1.52206 1.50276 0.95186 1.06381 1.74470 1.22237 0.96980 0.82230 1.01303 1.21997 0.96820 1.01080 0.97334 1.22083 0.94863 0.96391 1.04914 1.23543 1.00217 0.91516 0.90941 1.90714 1.00069 1.72206 1.52714 0.92735 0.99517 0.99586 0.88605 0.88610 0.89368 0.89484 0.87204 0.92064 0.87569 0.89869 0.92497 0.84026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.24 13.29 21.45 0.28 -59.95 16 2 C 0.00 -0.29 5.46 84.66 0.46 0.17 16 3 Si 0.98 45.17 29.54 68.60 2.03 47.19 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.55 -32.22 9.11 25.60 0.23 -31.98 16 8 H 0.07 3.94 7.74 -2.91 -0.02 3.92 16 9 C 0.04 2.45 4.26 29.85 0.13 2.58 16 10 C -0.11 -4.86 5.00 29.85 0.15 -4.71 16 11 C 0.53 22.75 7.80 87.66 0.68 23.44 16 12 O -0.57 -28.58 15.43 -3.03 -0.05 -28.63 16 13 N -0.48 -15.83 3.60 -461.28 -1.66 -17.49 16 14 C 0.09 2.32 6.62 86.39 0.57 2.89 16 15 C -0.13 -2.27 6.14 30.78 0.19 -2.08 16 16 C -0.14 -1.94 6.07 30.68 0.19 -1.75 16 17 C 0.01 0.26 7.08 72.01 0.51 0.77 16 18 O -0.15 -4.28 11.01 -39.97 -0.44 -4.72 16 19 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 20 H -0.01 -0.88 8.10 -2.39 -0.02 -0.90 16 21 H -0.01 -0.93 8.10 -2.39 -0.02 -0.95 16 22 H 0.10 4.06 8.14 -2.39 -0.02 4.04 16 23 H 0.10 3.96 8.14 -2.39 -0.02 3.94 16 24 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.09 2.51 7.07 -2.39 -0.02 2.50 16 26 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -76.09 264.32 4.37 -71.72 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: 1.10 Total: 2.56 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 3.11 Total: -10.68 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -1.37 Total: -77.44 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -0.49 Total: -33.35 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -76.09 4.37 -71.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308186760.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.133 kcal (2) G-P(sol) polarization free energy of solvation -76.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds