Wall clock time and date at job start Sun Mar 29 2020 22:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99862 * 2 1 4 4 H 1.48508 * 109.46912 * 240.00310 * 3 2 1 5 5 H 1.48504 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47083 * 120.00003 * 3 2 1 7 7 C 1.37874 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99751 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.53010 * 109.47116 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46914 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99995 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99547 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99752 * 179.97438 * 13 11 10 15 15 H 1.08999 * 110.83088 * 328.64393 * 14 13 11 16 16 C 1.54813 * 110.90801 * 204.99478 * 14 13 11 17 17 C 1.54098 * 104.30472 * 220.98806 * 16 14 13 18 18 O 1.43744 * 107.29564 * 357.90152 * 17 16 14 19 19 C 1.44373 * 106.97248 * 26.51652 * 18 17 16 20 20 H 0.96993 * 120.00145 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46857 * 60.00569 * 9 7 2 22 22 H 1.08992 * 109.47618 * 300.00075 * 9 7 2 23 23 H 1.08994 * 109.47076 * 60.00010 * 10 9 7 24 24 H 1.09001 * 109.46646 * 300.00312 * 10 9 7 25 25 H 0.96993 * 120.00325 * 359.97438 * 13 11 10 26 26 H 1.09002 * 110.48794 * 102.24351 * 16 14 13 27 27 H 1.09002 * 110.48657 * 339.72773 * 16 14 13 28 28 H 1.08999 * 109.88182 * 117.33024 * 17 16 14 29 29 H 1.09008 * 109.87958 * 238.32904 * 17 16 14 30 30 H 1.09002 * 110.62093 * 78.43762 * 19 18 17 31 31 H 1.09000 * 110.61898 * 201.27906 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 8 0.2790 -4.9672 -0.0011 13 7 2.1658 -6.1343 -0.0008 14 6 1.4333 -7.4031 -0.0008 15 1 0.4859 -7.3037 0.5290 16 6 2.2920 -8.5368 0.6107 17 6 2.0198 -9.7523 -0.2965 18 8 1.0589 -9.3420 -1.2837 19 6 1.2069 -7.9154 -1.4485 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8896 23 1 2.8720 -3.6043 0.8894 24 1 2.8720 -3.6042 -0.8905 25 1 3.1357 -6.1343 -0.0004 26 1 1.9764 -8.7454 1.6330 27 1 3.3488 -8.2709 0.5854 28 1 2.9429 -10.0644 -0.7850 29 1 1.6179 -10.5744 0.2959 30 1 2.0707 -7.6887 -2.0735 31 1 0.3020 -7.4823 -1.8748 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308189957.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:02 Heat of formation + Delta-G solvation = -123.843826 kcal Electronic energy + Delta-G solvation = -13917.340328 eV Core-core repulsion = 11390.105375 eV Total energy + Delta-G solvation = -2527.234953 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.14320 -39.77759 -35.78017 -35.49369 -33.11437 -31.77572 -29.70168 -27.56596 -24.31982 -23.39108 -22.13380 -21.29152 -18.87496 -17.81053 -17.72031 -16.94322 -16.56037 -16.47711 -16.04022 -15.53732 -14.76678 -14.48345 -14.15501 -14.12296 -13.35431 -13.23710 -12.79484 -12.67695 -12.50845 -12.41172 -11.93740 -11.89160 -11.62845 -11.31705 -10.80591 -10.74883 -10.55330 -10.08043 -8.17124 -6.31418 1.43124 1.47547 1.55286 1.66569 2.10810 2.44647 3.05458 3.16022 3.46681 3.80567 3.94537 4.07835 4.20304 4.22660 4.51291 4.57120 4.67040 4.75654 4.83915 4.89816 5.04218 5.11654 5.40211 5.51258 5.63899 5.83972 5.86616 6.18103 6.58067 6.87228 7.32214 7.39194 8.95410 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.088014 B = 0.005107 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.055521 B = 5481.780531 C = 5617.213543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.040 3.960 10 C -0.118 4.118 11 C 0.512 3.488 12 O -0.588 6.588 13 N -0.706 5.706 14 C 0.106 3.894 15 H 0.076 0.924 16 C -0.151 4.151 17 C 0.042 3.958 18 O -0.398 6.398 19 C 0.038 3.962 20 H 0.263 0.737 21 H -0.018 1.018 22 H -0.019 1.019 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.420 0.580 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.621 -17.013 0.497 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.095 0.905 9 C 0.002 3.998 10 C -0.158 4.158 11 C 0.301 3.699 12 O -0.467 6.467 13 N -0.361 5.361 14 C 0.000 4.000 15 H 0.094 0.906 16 C -0.188 4.188 17 C -0.034 4.034 18 O -0.317 6.317 19 C -0.040 4.040 20 H 0.071 0.929 21 H 0.000 1.000 22 H 0.000 1.000 23 H 0.125 0.875 24 H 0.125 0.875 25 H 0.259 0.741 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.479 -17.071 0.391 19.530 hybrid contribution 0.146 1.112 0.060 1.123 sum 9.625 -15.960 0.451 18.643 Atomic orbital electron populations 1.70173 1.08366 1.27868 1.51466 1.26139 0.95688 1.03970 0.94619 0.85372 0.78035 0.77329 0.79488 1.18678 1.21456 1.18642 1.21697 0.94044 0.91586 1.50848 0.90466 1.18706 0.93787 0.92583 0.94687 1.21643 0.99273 0.89775 1.05106 1.21437 0.87857 0.86859 0.73757 1.90671 1.16832 1.88327 1.50877 1.45776 1.10826 1.03828 1.75625 1.22503 0.96919 0.84071 0.96550 0.90596 1.23173 1.01759 0.92967 1.00946 1.23371 0.93295 0.97253 0.89489 1.88879 1.59619 1.22035 1.61179 1.23944 1.02412 0.80870 0.96792 0.92884 0.99990 1.00009 0.87461 0.87478 0.74136 0.88656 0.87352 0.90163 0.88224 0.90257 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.67 13.29 21.45 0.28 -59.39 16 2 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 3 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 7 C -0.54 -30.70 9.11 25.60 0.23 -30.47 16 8 H 0.08 3.93 7.74 -2.91 -0.02 3.90 16 9 C 0.04 2.21 4.26 29.85 0.13 2.34 16 10 C -0.12 -4.58 5.64 29.85 0.17 -4.41 16 11 C 0.51 19.17 7.83 87.66 0.69 19.86 16 12 O -0.59 -28.65 15.62 -3.04 -0.05 -28.70 16 13 N -0.71 -17.61 5.20 -436.01 -2.27 -19.88 16 14 C 0.11 2.53 3.51 46.37 0.16 2.69 16 15 H 0.08 2.30 7.54 -2.39 -0.02 2.28 16 16 C -0.15 -2.17 6.75 31.58 0.21 -1.96 16 17 C 0.04 0.64 7.70 72.35 0.56 1.19 16 18 O -0.40 -9.55 11.52 -148.98 -1.72 -11.27 16 19 C 0.04 0.93 7.42 72.75 0.54 1.46 16 20 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 21 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 22 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 23 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 24 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 25 H 0.42 6.95 8.41 -92.71 -0.78 6.18 16 26 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.11 1.02 7.77 -2.39 -0.02 1.01 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -77.23 267.12 1.77 -75.46 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 0.34 Total: 6.97 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 3.15 Total: -9.22 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -1.98 Total: -79.26 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -1.76 Total: -39.97 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -77.23 1.77 -75.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308189957.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.379 kcal (2) G-P(sol) polarization free energy of solvation -77.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds