Wall clock time and date at job start Sun Mar 29 2020 22:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 112.85331 * 2 1 4 4 C 1.42899 * 113.99607 * 50.33149 * 3 2 1 5 5 C 1.50702 * 109.46876 * 179.97438 * 4 3 2 6 6 O 1.21293 * 120.00255 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99928 * 179.72354 * 5 4 3 8 8 C 1.37101 * 120.00327 * 180.27606 * 7 5 4 9 9 H 1.08001 * 119.99426 * 0.02562 * 8 7 5 10 10 C 1.38942 * 120.00412 * 180.02562 * 8 7 5 11 11 N 1.31414 * 120.00005 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00057 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46646 * 60.00463 * 12 10 8 14 14 H 1.48504 * 109.47036 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47259 * 300.00225 * 12 10 8 16 16 C 1.53776 * 113.61384 * 131.19909 * 2 1 3 17 17 C 1.53953 * 87.02233 * 89.22753 * 16 2 1 18 18 C 1.53779 * 113.61407 * 228.80474 * 2 1 3 19 19 H 1.09003 * 109.46687 * 69.66073 * 1 2 3 20 20 H 1.08995 * 109.47345 * 189.66747 * 1 2 3 21 21 H 1.09002 * 109.47005 * 309.66656 * 1 2 3 22 22 H 1.09004 * 109.47206 * 60.00168 * 4 3 2 23 23 H 1.09000 * 109.47808 * 300.00186 * 4 3 2 24 24 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 25 25 H 0.96996 * 120.00330 * 179.97438 * 11 10 8 26 26 H 1.08998 * 113.61553 * 203.74712 * 16 2 1 27 27 H 1.09007 * 113.61374 * 334.65222 * 16 2 1 28 28 H 1.09011 * 113.53704 * 270.81530 * 17 16 2 29 29 H 1.09001 * 113.74634 * 139.94953 * 17 16 2 30 30 H 1.09009 * 113.61579 * 25.35106 * 18 2 1 31 31 H 1.08996 * 113.61959 * 156.25176 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0850 1.3168 0.0000 4 6 1.5428 2.1760 1.0049 5 6 2.1966 3.5307 0.9137 6 8 3.0433 3.7400 0.0708 7 7 1.8362 4.5116 1.7649 8 6 2.4270 5.7457 1.6784 9 1 3.1809 5.9320 0.9278 10 6 2.0559 6.7568 2.5562 11 7 1.1389 6.5299 3.4698 12 14 2.8614 8.4381 2.4387 13 1 2.6046 9.0171 1.0955 14 1 2.2948 9.3323 3.4802 15 1 4.3253 8.3013 2.6473 16 6 2.1460 -0.9281 1.0602 17 6 2.0950 -2.0420 -0.0013 18 6 2.1460 -0.9280 -1.0602 19 1 -0.3633 0.3572 -0.9636 20 1 -0.3634 -1.0130 0.1726 21 1 -0.3633 0.6560 0.7911 22 1 1.7310 1.7476 1.9894 23 1 0.4684 2.2798 0.8533 24 1 1.1590 4.3444 2.4389 25 1 0.8800 7.2356 4.0829 26 1 3.1585 -0.6478 1.3506 27 1 1.4938 -1.1080 1.9149 28 1 1.1593 -2.6013 -0.0007 29 1 2.9736 -2.6870 -0.0033 30 1 1.4939 -1.1079 -1.9151 31 1 3.1585 -0.6478 -1.3507 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308193160.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:15 Heat of formation + Delta-G solvation = -66.932126 kcal Electronic energy + Delta-G solvation = -14176.269640 eV Core-core repulsion = 11651.502563 eV Total energy + Delta-G solvation = -2524.767077 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.75302 -38.00120 -35.41262 -33.83477 -31.23628 -29.04023 -27.79855 -25.68300 -24.48352 -22.96304 -19.36180 -18.67330 -17.89004 -16.93746 -15.69895 -15.34478 -14.83597 -14.78817 -14.18413 -13.67388 -13.57092 -12.78971 -12.62992 -12.18963 -12.02307 -11.62240 -11.54938 -11.23338 -11.05976 -10.93821 -10.65625 -10.42894 -10.21474 -10.09773 -9.50265 -9.12287 -8.30805 -7.96642 -6.40846 -3.81984 3.21753 3.27030 3.31370 3.78697 3.90103 4.25453 4.57852 4.60397 4.79599 4.80273 5.22929 5.25489 5.36279 5.47135 5.60711 5.70717 5.75376 5.82722 5.86254 5.91072 6.00829 6.06310 6.22686 6.29722 6.42755 7.56108 7.57964 8.06728 8.62439 9.18503 9.53174 10.05477 10.76946 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.074584 B = 0.005904 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.327101 B = 4741.242888 C = 4895.703071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.080 3.920 3 O -0.341 6.341 4 C 0.052 3.948 5 C 0.443 3.557 6 O -0.577 6.577 7 N -0.561 5.561 8 C -0.300 4.300 9 H 0.103 0.897 10 C 0.023 3.977 11 N -0.903 5.903 12 Si 0.933 3.067 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.273 1.273 16 C -0.163 4.163 17 C -0.139 4.139 18 C -0.120 4.120 19 H 0.067 0.933 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.393 0.607 25 H 0.272 0.728 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.037 -13.494 -2.407 14.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 O -0.259 6.259 4 C -0.028 4.028 5 C 0.228 3.772 6 O -0.460 6.460 7 N -0.199 5.199 8 C -0.429 4.429 9 H 0.121 0.879 10 C -0.179 4.179 11 N -0.544 5.544 12 Si 0.759 3.241 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.199 1.199 16 C -0.200 4.200 17 C -0.177 4.177 18 C -0.157 4.157 19 H 0.086 0.914 20 H 0.086 0.914 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.226 0.774 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.400 -13.161 -2.964 13.702 hybrid contribution -0.332 0.695 0.705 1.044 sum -2.732 -12.466 -2.260 12.960 Atomic orbital electron populations 1.22103 0.94161 1.02581 1.03171 1.23013 0.92855 0.82932 0.97187 1.88113 1.62669 1.20895 1.54228 1.22134 0.97612 0.91169 0.91848 1.19612 0.86907 0.85420 0.85289 1.90538 1.35206 1.82277 1.38002 1.41747 1.37344 1.10261 1.30571 1.19667 1.20116 0.86619 1.16503 0.87897 1.25260 0.96809 1.00146 0.95643 1.69604 1.30760 1.34808 1.19210 0.85891 0.79269 0.80943 0.77961 1.19852 1.20947 1.19861 1.23626 1.02342 0.96703 0.97353 1.22711 1.02057 0.96070 0.96826 1.23040 1.02277 0.93954 0.96442 0.91428 0.91385 0.91462 0.92032 0.91700 0.77391 0.91789 0.89207 0.91395 0.90179 0.91008 0.90992 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 8.80 37.16 0.33 -1.62 16 2 C 0.08 1.15 1.39 -89.81 -0.12 1.03 16 3 O -0.34 -6.72 9.83 -55.14 -0.54 -7.26 16 4 C 0.05 1.02 5.79 36.01 0.21 1.23 16 5 C 0.44 11.25 7.86 -10.98 -0.09 11.16 16 6 O -0.58 -17.07 16.08 -14.36 -0.23 -17.30 16 7 N -0.56 -14.74 5.29 -10.96 -0.06 -14.80 16 8 C -0.30 -8.57 9.68 -14.93 -0.14 -8.71 16 9 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 10 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 11 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 12 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 13 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 16 C -0.16 -2.01 7.33 -25.83 -0.19 -2.20 16 17 C -0.14 -1.41 7.74 -25.83 -0.20 -1.61 16 18 C -0.12 -1.47 7.50 -25.92 -0.19 -1.67 16 19 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 20 H 0.07 0.65 7.34 -51.93 -0.38 0.27 16 21 H 0.07 0.81 6.27 -51.93 -0.33 0.48 16 22 H 0.06 1.07 8.06 -51.93 -0.42 0.65 16 23 H 0.07 1.12 6.39 -51.93 -0.33 0.78 16 24 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 25 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 28 H 0.08 0.69 7.64 -51.92 -0.40 0.29 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.78 8.10 -51.92 -0.42 0.36 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 264.53 15.07 3.99 3.99 Total: -1.00 -32.47 264.53 -5.86 -38.33 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -4.22 Total: 6.70 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -0.50 Total: -1.87 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.67 Total: -38.83 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.77 Total: -24.57 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.47 -5.86 -38.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308193160.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.603 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds