Wall clock time and date at job start Sun Mar 29 2020 22:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 112.85331 * 2 1 4 4 C 1.42899 * 113.99607 * 50.33149 * 3 2 1 5 5 C 1.50702 * 109.46876 * 179.97438 * 4 3 2 6 6 O 1.21293 * 120.00255 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99928 * 179.72354 * 5 4 3 8 8 C 1.37101 * 120.00327 * 180.27606 * 7 5 4 9 9 H 1.08001 * 119.99426 * 0.02562 * 8 7 5 10 10 C 1.38942 * 120.00412 * 180.02562 * 8 7 5 11 11 N 1.31414 * 120.00005 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00057 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46646 * 60.00463 * 12 10 8 14 14 H 1.48504 * 109.47036 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47259 * 300.00225 * 12 10 8 16 16 C 1.53776 * 113.61384 * 131.19909 * 2 1 3 17 17 C 1.53953 * 87.02233 * 89.22753 * 16 2 1 18 18 C 1.53779 * 113.61407 * 228.80474 * 2 1 3 19 19 H 1.09003 * 109.46687 * 69.66073 * 1 2 3 20 20 H 1.08995 * 109.47345 * 189.66747 * 1 2 3 21 21 H 1.09002 * 109.47005 * 309.66656 * 1 2 3 22 22 H 1.09004 * 109.47206 * 60.00168 * 4 3 2 23 23 H 1.09000 * 109.47808 * 300.00186 * 4 3 2 24 24 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 25 25 H 0.96996 * 120.00330 * 179.97438 * 11 10 8 26 26 H 1.08998 * 113.61553 * 203.74712 * 16 2 1 27 27 H 1.09007 * 113.61374 * 334.65222 * 16 2 1 28 28 H 1.09011 * 113.53704 * 270.81530 * 17 16 2 29 29 H 1.09001 * 113.74634 * 139.94953 * 17 16 2 30 30 H 1.09009 * 113.61579 * 25.35106 * 18 2 1 31 31 H 1.08996 * 113.61959 * 156.25176 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0850 1.3168 0.0000 4 6 1.5428 2.1760 1.0049 5 6 2.1966 3.5307 0.9137 6 8 3.0433 3.7400 0.0708 7 7 1.8362 4.5116 1.7649 8 6 2.4270 5.7457 1.6784 9 1 3.1809 5.9320 0.9278 10 6 2.0559 6.7568 2.5562 11 7 1.1389 6.5299 3.4698 12 14 2.8614 8.4381 2.4387 13 1 2.6046 9.0171 1.0955 14 1 2.2948 9.3323 3.4802 15 1 4.3253 8.3013 2.6473 16 6 2.1460 -0.9281 1.0602 17 6 2.0950 -2.0420 -0.0013 18 6 2.1460 -0.9280 -1.0602 19 1 -0.3633 0.3572 -0.9636 20 1 -0.3634 -1.0130 0.1726 21 1 -0.3633 0.6560 0.7911 22 1 1.7310 1.7476 1.9894 23 1 0.4684 2.2798 0.8533 24 1 1.1590 4.3444 2.4389 25 1 0.8800 7.2356 4.0829 26 1 3.1585 -0.6478 1.3506 27 1 1.4938 -1.1080 1.9149 28 1 1.1593 -2.6013 -0.0007 29 1 2.9736 -2.6870 -0.0033 30 1 1.4939 -1.1079 -1.9151 31 1 3.1585 -0.6478 -1.3507 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308193160.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:15 Heat of formation + Delta-G solvation = -89.038790 kcal Electronic energy + Delta-G solvation = -14177.228256 eV Core-core repulsion = 11651.502563 eV Total energy + Delta-G solvation = -2525.725694 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.94317 -39.88735 -36.80712 -35.92412 -33.35724 -29.98467 -29.49615 -26.77391 -26.31716 -24.00386 -21.31229 -20.03675 -19.71726 -18.24524 -17.36052 -16.78503 -16.73708 -15.97236 -15.91746 -15.29442 -14.93392 -14.25839 -14.17993 -13.54767 -13.31287 -13.05428 -12.95438 -12.79010 -12.48276 -12.18157 -12.11050 -12.05857 -11.67172 -11.55655 -11.11185 -10.40706 -10.34104 -10.08112 -8.50594 -6.00830 1.38532 1.41310 1.52652 1.94569 2.20331 2.52436 3.15103 3.41106 3.65647 3.68861 3.88725 3.92548 4.12437 4.35625 4.38034 4.46892 4.62144 4.76150 4.86817 4.88412 5.02588 5.08081 5.14145 5.30615 5.37009 5.49997 5.90484 6.31681 6.56696 7.06672 7.46263 8.02371 8.66538 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.074584 B = 0.005904 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.327101 B = 4741.242888 C = 4895.703071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.059 3.941 3 O -0.379 6.379 4 C 0.068 3.932 5 C 0.432 3.568 6 O -0.628 6.628 7 N -0.563 5.563 8 C -0.341 4.341 9 H 0.078 0.922 10 C -0.008 4.008 11 N -0.917 5.917 12 Si 0.997 3.003 13 H -0.271 1.271 14 H -0.266 1.266 15 H -0.272 1.272 16 C -0.165 4.165 17 C -0.120 4.120 18 C -0.126 4.126 19 H 0.064 0.936 20 H 0.098 0.902 21 H 0.065 0.935 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.399 0.601 25 H 0.281 0.719 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.131 -14.416 -1.754 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.020 3.980 3 O -0.299 6.299 4 C -0.011 4.011 5 C 0.220 3.780 6 O -0.515 6.515 7 N -0.201 5.201 8 C -0.470 4.470 9 H 0.096 0.904 10 C -0.209 4.209 11 N -0.557 5.557 12 Si 0.819 3.181 13 H -0.196 1.196 14 H -0.191 1.191 15 H -0.197 1.197 16 C -0.202 4.202 17 C -0.157 4.157 18 C -0.164 4.164 19 H 0.083 0.917 20 H 0.116 0.884 21 H 0.084 0.916 22 H 0.103 0.897 23 H 0.109 0.891 24 H 0.234 0.766 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.124 0.876 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.526 -14.109 -2.285 14.721 hybrid contribution -0.001 0.938 0.494 1.060 sum -3.527 -13.171 -1.791 13.752 Atomic orbital electron populations 1.22112 0.92105 1.04460 1.02997 1.23594 0.94603 0.80677 0.99144 1.88071 1.64059 1.23306 1.54422 1.21920 0.98015 0.87982 0.93190 1.20695 0.86147 0.87294 0.83892 1.90492 1.37504 1.83610 1.39898 1.41787 1.37337 1.10104 1.30910 1.19653 1.21345 0.88500 1.17521 0.90407 1.26078 0.96891 1.03274 0.94616 1.69657 1.30780 1.36154 1.19092 0.84946 0.78322 0.76431 0.78358 1.19638 1.19057 1.19681 1.23610 1.01426 0.97084 0.98117 1.22699 1.03936 0.95106 0.93934 1.23112 1.01380 0.94508 0.97354 0.91744 0.88367 0.91610 0.89712 0.89106 0.76629 0.90999 0.91135 0.89742 0.87569 0.89886 0.89520 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 8.80 71.98 0.63 -2.76 16 2 C 0.06 1.60 1.39 -10.27 -0.01 1.58 16 3 O -0.38 -14.99 9.83 -129.94 -1.28 -16.26 16 4 C 0.07 2.64 5.79 71.24 0.41 3.05 16 5 C 0.43 22.50 7.86 87.66 0.69 23.19 16 6 O -0.63 -38.72 16.08 15.97 0.26 -38.46 16 7 N -0.56 -30.18 5.29 -306.98 -1.62 -31.81 16 8 C -0.34 -19.96 9.68 84.04 0.81 -19.15 16 9 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 10 C -0.01 -0.44 5.50 84.92 0.47 0.02 16 11 N -0.92 -49.53 13.05 21.66 0.28 -49.25 16 12 Si 1.00 43.21 29.55 68.60 2.03 45.24 16 13 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 14 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 16 C -0.16 -3.75 7.33 31.18 0.23 -3.52 16 17 C -0.12 -2.07 7.74 31.18 0.24 -1.83 16 18 C -0.13 -2.93 7.50 31.12 0.23 -2.70 16 19 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 20 H 0.10 1.47 7.34 -2.39 -0.02 1.46 16 21 H 0.06 1.40 6.27 -2.39 -0.01 1.39 16 22 H 0.09 2.85 8.06 -2.38 -0.02 2.83 16 23 H 0.09 3.01 6.39 -2.39 -0.02 2.99 16 24 H 0.40 19.87 7.90 -92.71 -0.73 19.14 16 25 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 26 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.08 1.62 8.10 -2.38 -0.02 1.60 16 28 H 0.11 1.33 7.64 -2.38 -0.02 1.31 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 1.72 8.10 -2.38 -0.02 1.70 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -71.34 264.53 3.77 -67.58 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.40 Total: 25.07 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 3.70 Total: -2.10 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -1.34 Total: -81.06 kcal Atomic # 8 Polarization: -53.71 SS G_CDS: -1.02 Total: -54.73 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -71.34 3.77 -67.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308193160.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.461 kcal (2) G-P(sol) polarization free energy of solvation -71.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds