Wall clock time and date at job start Sun Mar 29 2020 22:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47274 * 2 1 4 4 C 1.50691 * 109.47382 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00028 * 0.02562 * 4 3 2 6 6 N 1.34781 * 120.00407 * 179.97438 * 4 3 2 7 7 C 1.47575 * 134.49576 * 180.02562 * 6 4 3 8 8 C 1.53952 * 86.11883 * 155.35932 * 7 6 4 9 9 O 1.42896 * 113.73968 * 269.15538 * 8 7 6 10 10 C 1.50696 * 113.74096 * 137.94737 * 8 7 6 11 11 H 1.07999 * 120.00319 * 0.02562 * 10 8 7 12 12 C 1.37885 * 119.99717 * 179.97438 * 10 8 7 13 13 N 1.31516 * 119.99913 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 0.02562 * 12 10 8 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.47581 * 134.48697 * 359.97438 * 6 4 3 19 19 H 1.09006 * 109.47464 * 299.99934 * 1 2 3 20 20 H 1.09001 * 109.47289 * 59.99942 * 1 2 3 21 21 H 1.09001 * 109.47246 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47228 * 239.99914 * 2 1 3 23 23 H 1.09001 * 109.47289 * 120.00058 * 2 1 3 24 24 H 1.09006 * 109.46821 * 59.99672 * 3 2 1 25 25 H 1.09001 * 109.47010 * 300.00228 * 3 2 1 26 26 H 1.08992 * 113.77450 * 41.05752 * 7 6 4 27 27 H 1.09008 * 113.87093 * 269.66964 * 7 6 4 28 28 H 0.96697 * 113.99744 * 178.07719 * 9 8 7 29 29 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 30 30 H 1.09002 * 113.76822 * 90.34347 * 18 6 4 31 31 H 1.08998 * 113.77440 * 318.94601 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 8 4.1533 0.3922 0.0006 6 7 4.2209 2.6097 0.0002 7 6 5.6497 2.9790 0.0001 8 6 5.1994 4.3044 -0.6408 9 8 5.1860 4.2773 -2.0694 10 6 5.8992 5.5168 -0.0826 11 1 6.6401 5.4025 0.6948 12 6 5.5942 6.7719 -0.5653 13 7 6.2053 7.8299 -0.0786 14 14 4.3132 6.9694 -1.9105 15 1 4.9736 6.8912 -3.2383 16 1 3.3034 5.8866 -1.7953 17 1 3.6443 8.2874 -1.7672 18 6 3.8262 4.0318 -0.0013 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 6.2633 2.3606 -0.6547 27 1 6.0753 3.0954 0.9969 28 1 4.8757 5.0982 -2.4755 29 1 5.9910 8.7128 -0.4184 30 1 3.7137 4.4575 0.9958 31 1 2.9845 4.2535 -0.6572 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308208175.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:46 Heat of formation + Delta-G solvation = -49.953701 kcal Electronic energy + Delta-G solvation = -14507.640072 eV Core-core repulsion = 11983.609235 eV Total energy + Delta-G solvation = -2524.030837 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.77222 -37.80184 -34.52268 -34.16497 -32.56596 -29.48767 -27.47320 -25.53260 -25.11048 -21.65729 -20.09821 -18.53233 -17.45622 -16.49545 -16.37468 -15.67356 -15.25570 -14.39679 -13.74534 -13.57074 -13.21783 -13.13884 -12.61053 -12.46636 -12.27310 -11.75913 -11.65143 -11.22024 -11.13796 -10.96307 -10.67848 -10.61614 -10.15415 -9.71247 -9.30163 -9.01103 -8.69676 -8.01907 -6.44266 -4.50217 2.97099 2.98410 3.11244 3.12431 3.42818 4.00574 4.61638 4.82943 4.98487 5.06121 5.10670 5.46530 5.54850 5.59508 5.70283 5.75098 5.98577 6.03707 6.06071 6.20658 6.26263 6.34837 6.35091 6.49301 6.59794 7.18557 8.00422 8.31766 8.48889 8.59715 8.65440 9.13331 10.68013 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045532 B = 0.008365 C = 0.007684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.808930 B = 3346.581587 C = 3643.118724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.135 4.135 4 C 0.528 3.472 5 O -0.562 6.562 6 N -0.636 5.636 7 C 0.125 3.875 8 C 0.194 3.806 9 O -0.553 6.553 10 C -0.536 4.536 11 H 0.091 0.909 12 C 0.080 3.920 13 N -0.876 5.876 14 Si 0.860 3.140 15 H -0.267 1.267 16 H -0.257 1.257 17 H -0.283 1.283 18 C 0.063 3.937 19 H 0.053 0.947 20 H 0.053 0.947 21 H 0.055 0.945 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.351 0.649 29 H 0.271 0.729 30 H 0.095 0.905 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.821 -6.701 -0.367 11.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.175 4.175 4 C 0.317 3.683 5 O -0.442 6.442 6 N -0.370 5.370 7 C 0.003 3.997 8 C 0.153 3.847 9 O -0.364 6.364 10 C -0.574 4.574 11 H 0.109 0.891 12 C -0.126 4.126 13 N -0.512 5.512 14 Si 0.688 3.312 15 H -0.193 1.193 16 H -0.183 1.183 17 H -0.210 1.210 18 C -0.060 4.060 19 H 0.072 0.928 20 H 0.072 0.928 21 H 0.074 0.926 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.203 0.797 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.368 -7.811 -0.266 12.200 hybrid contribution -0.927 1.000 -0.748 1.555 sum -10.295 -6.811 -1.014 12.386 Atomic orbital electron populations 1.21794 0.95771 1.01608 1.01719 1.21264 0.94888 0.95051 1.03361 1.21629 0.92380 0.99461 1.04022 1.20312 0.89714 0.82219 0.76009 1.90634 1.70691 1.30735 1.52183 1.50154 1.09867 1.05583 1.71390 1.23274 0.82487 0.93553 1.00342 1.20563 0.90829 0.94525 0.78755 1.86481 1.89247 1.40074 1.20588 1.21242 1.24512 0.88660 1.22989 0.89060 1.25012 0.95529 0.95915 0.96098 1.69858 1.40851 0.98820 1.41644 0.87324 0.82534 0.78355 0.82958 1.19295 1.18263 1.20996 1.24592 1.01603 0.77901 1.01882 0.92770 0.92768 0.92612 0.91380 0.91402 0.89368 0.89406 0.90703 0.88845 0.79698 0.91882 0.88732 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.15 0.37 -1.15 16 2 C -0.11 -1.40 5.22 -26.73 -0.14 -1.54 16 3 C -0.14 -1.95 5.45 -27.89 -0.15 -2.11 16 4 C 0.53 10.20 8.06 -10.99 -0.09 10.11 16 5 O -0.56 -12.52 16.71 5.56 0.09 -12.43 16 6 N -0.64 -12.80 3.61 -178.33 -0.64 -13.45 16 7 C 0.13 2.64 8.23 -2.97 -0.02 2.62 16 8 C 0.19 4.41 1.06 -90.86 -0.10 4.32 16 9 O -0.55 -13.01 13.32 -35.23 -0.47 -13.48 16 10 C -0.54 -13.75 9.20 -34.44 -0.32 -14.07 16 11 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 12 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 13 N -0.88 -24.33 13.96 55.43 0.77 -23.56 16 14 Si 0.86 18.66 24.34 -169.99 -4.14 14.52 16 15 H -0.27 -5.68 7.06 56.52 0.40 -5.28 16 16 H -0.26 -5.17 5.28 56.52 0.30 -4.88 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 C 0.06 1.25 7.20 -2.99 -0.02 1.23 16 19 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 20 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 23 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 24 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 25 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 27 H 0.09 1.84 8.09 -51.92 -0.42 1.42 16 28 H 0.35 7.82 3.31 45.56 0.15 7.97 16 29 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 31 H 0.07 1.26 6.98 -51.93 -0.36 0.90 16 LS Contribution 259.07 15.07 3.90 3.90 Total: -1.00 -29.57 259.07 -5.14 -34.71 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -4.09 Total: 8.39 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -0.57 Total: 1.38 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.13 Total: -37.01 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.38 Total: -25.90 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -4.14 Total: 14.52 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.57 -5.14 -34.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308208175.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.248 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds