Wall clock time and date at job start Sun Mar 29 2020 22:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47274 * 2 1 4 4 C 1.50691 * 109.47382 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00028 * 0.02562 * 4 3 2 6 6 N 1.34781 * 120.00407 * 179.97438 * 4 3 2 7 7 C 1.47575 * 134.49576 * 180.02562 * 6 4 3 8 8 C 1.53952 * 86.11883 * 155.35932 * 7 6 4 9 9 O 1.42896 * 113.73968 * 269.15538 * 8 7 6 10 10 C 1.50696 * 113.74096 * 137.94737 * 8 7 6 11 11 H 1.07999 * 120.00319 * 0.02562 * 10 8 7 12 12 C 1.37885 * 119.99717 * 179.97438 * 10 8 7 13 13 N 1.31516 * 119.99913 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 0.02562 * 12 10 8 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.47581 * 134.48697 * 359.97438 * 6 4 3 19 19 H 1.09006 * 109.47464 * 299.99934 * 1 2 3 20 20 H 1.09001 * 109.47289 * 59.99942 * 1 2 3 21 21 H 1.09001 * 109.47246 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47228 * 239.99914 * 2 1 3 23 23 H 1.09001 * 109.47289 * 120.00058 * 2 1 3 24 24 H 1.09006 * 109.46821 * 59.99672 * 3 2 1 25 25 H 1.09001 * 109.47010 * 300.00228 * 3 2 1 26 26 H 1.08992 * 113.77450 * 41.05752 * 7 6 4 27 27 H 1.09008 * 113.87093 * 269.66964 * 7 6 4 28 28 H 0.96697 * 113.99744 * 178.07719 * 9 8 7 29 29 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 30 30 H 1.09002 * 113.76822 * 90.34347 * 18 6 4 31 31 H 1.08998 * 113.77440 * 318.94601 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 8 4.1533 0.3922 0.0006 6 7 4.2209 2.6097 0.0002 7 6 5.6497 2.9790 0.0001 8 6 5.1994 4.3044 -0.6408 9 8 5.1860 4.2773 -2.0694 10 6 5.8992 5.5168 -0.0826 11 1 6.6401 5.4025 0.6948 12 6 5.5942 6.7719 -0.5653 13 7 6.2053 7.8299 -0.0786 14 14 4.3132 6.9694 -1.9105 15 1 4.9736 6.8912 -3.2383 16 1 3.3034 5.8866 -1.7953 17 1 3.6443 8.2874 -1.7672 18 6 3.8262 4.0318 -0.0013 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 6.2633 2.3606 -0.6547 27 1 6.0753 3.0954 0.9969 28 1 4.8757 5.0982 -2.4755 29 1 5.9910 8.7128 -0.4184 30 1 3.7137 4.4575 0.9958 31 1 2.9845 4.2535 -0.6572 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308208175.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:45 Heat of formation + Delta-G solvation = -72.140149 kcal Electronic energy + Delta-G solvation = -14508.602149 eV Core-core repulsion = 11983.609235 eV Total energy + Delta-G solvation = -2524.992914 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.39351 -39.41752 -36.26294 -35.27176 -34.54898 -31.04521 -28.86297 -27.12333 -26.80675 -22.81678 -21.71030 -20.11358 -19.33342 -18.18581 -18.01711 -16.98521 -16.76656 -15.79578 -15.55180 -15.21217 -14.76130 -14.50257 -14.09205 -13.97814 -13.83462 -12.98275 -12.89732 -12.75084 -12.55270 -12.43527 -12.05085 -11.93765 -11.64809 -11.41916 -11.10327 -10.83362 -10.45515 -9.65992 -8.42399 -6.55110 1.25648 1.28876 1.41701 1.62023 1.90365 2.18387 2.77129 3.21489 3.56683 3.85037 3.98263 4.07986 4.35478 4.42173 4.46771 4.65777 4.67300 4.68249 4.71945 4.79204 4.93043 5.00177 5.20269 5.26137 5.29577 5.45565 6.03823 6.52441 6.65989 6.80317 7.10903 7.14436 8.73109 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045532 B = 0.008365 C = 0.007684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.808930 B = 3346.581587 C = 3643.118724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.127 4.127 4 C 0.520 3.480 5 O -0.598 6.598 6 N -0.638 5.638 7 C 0.120 3.880 8 C 0.183 3.817 9 O -0.561 6.561 10 C -0.545 4.545 11 H 0.055 0.945 12 C 0.027 3.973 13 N -0.924 5.924 14 Si 0.920 3.080 15 H -0.259 1.259 16 H -0.226 1.226 17 H -0.281 1.281 18 C 0.079 3.921 19 H 0.065 0.935 20 H 0.063 0.937 21 H 0.064 0.936 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.112 0.888 25 H 0.105 0.895 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.356 0.644 29 H 0.274 0.726 30 H 0.106 0.894 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.635 -7.061 -1.131 14.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.167 4.167 4 C 0.312 3.688 5 O -0.481 6.481 6 N -0.372 5.372 7 C -0.003 4.003 8 C 0.142 3.858 9 O -0.373 6.373 10 C -0.583 4.583 11 H 0.073 0.927 12 C -0.174 4.174 13 N -0.562 5.562 14 Si 0.744 3.256 15 H -0.185 1.185 16 H -0.149 1.149 17 H -0.207 1.207 18 C -0.044 4.044 19 H 0.084 0.916 20 H 0.082 0.918 21 H 0.083 0.917 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.130 0.870 25 H 0.124 0.876 26 H 0.084 0.916 27 H 0.118 0.882 28 H 0.209 0.791 29 H 0.083 0.917 30 H 0.124 0.876 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.197 -8.189 -1.025 14.727 hybrid contribution 0.078 1.077 -0.458 1.173 sum -12.119 -7.112 -1.483 14.130 Atomic orbital electron populations 1.21746 0.93037 1.02668 1.02744 1.21260 0.97140 0.93924 1.02112 1.21723 0.88183 1.00831 1.05919 1.21287 0.91718 0.81151 0.74653 1.90618 1.71915 1.31884 1.53638 1.50191 1.09115 1.06224 1.71636 1.23247 0.83688 0.92927 1.00452 1.20613 0.93023 0.93641 0.78502 1.86476 1.89587 1.40405 1.20843 1.21350 1.24200 0.90365 1.22372 0.92717 1.25855 0.97771 0.95240 0.98557 1.70003 1.42988 0.99529 1.43666 0.86319 0.80379 0.79259 0.79613 1.18541 1.14940 1.20743 1.24430 1.00058 0.77338 1.02560 0.91593 0.91839 0.91660 0.92911 0.92563 0.86965 0.87630 0.91608 0.88229 0.79132 0.91694 0.87577 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.91 71.98 0.71 -1.65 16 2 C -0.11 -2.51 5.22 30.59 0.16 -2.35 16 3 C -0.13 -3.24 5.45 29.85 0.16 -3.08 16 4 C 0.52 19.09 8.06 87.65 0.71 19.79 16 5 O -0.60 -26.25 16.71 -3.02 -0.05 -26.30 16 6 N -0.64 -24.44 3.61 -840.32 -3.03 -27.47 16 7 C 0.12 5.01 8.23 86.48 0.71 5.72 16 8 C 0.18 8.09 1.06 -10.89 -0.01 8.08 16 9 O -0.56 -25.27 13.32 -148.98 -1.98 -27.25 16 10 C -0.54 -28.22 9.20 25.60 0.24 -27.99 16 11 H 0.05 3.14 8.06 -2.91 -0.02 3.11 16 12 C 0.03 1.39 5.47 84.66 0.46 1.86 16 13 N -0.92 -52.23 13.96 21.45 0.30 -51.93 16 14 Si 0.92 36.96 24.34 68.60 1.67 38.63 16 15 H -0.26 -10.13 7.06 99.48 0.70 -9.42 16 16 H -0.23 -7.85 5.28 99.48 0.53 -7.33 16 17 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 18 C 0.08 2.87 7.20 86.47 0.62 3.49 16 19 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 20 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 21 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 22 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 23 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 24 H 0.11 2.37 8.14 -2.38 -0.02 2.35 16 25 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 27 H 0.10 3.97 8.09 -2.38 -0.02 3.95 16 28 H 0.36 14.81 3.31 -74.06 -0.24 14.56 16 29 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.11 3.64 8.09 -2.39 -0.02 3.62 16 31 H 0.09 2.93 6.98 -2.39 -0.02 2.91 16 Total: -1.00 -64.20 259.07 1.35 -62.85 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.69 Total: 27.61 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 3.76 Total: 3.87 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -2.73 Total: -79.40 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -2.03 Total: -53.55 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 1.67 Total: 38.63 kcal Total: -64.20 1.35 -62.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308208175.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.292 kcal (2) G-P(sol) polarization free energy of solvation -64.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds