Wall clock time and date at job start Sun Mar 29 2020 22:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48502 * 109.46883 * 270.00061 * 3 2 1 5 5 H 1.48507 * 109.47018 * 29.99389 * 3 2 1 6 6 H 1.48496 * 109.47426 * 149.99574 * 3 2 1 7 7 C 1.37882 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99839 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47313 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00258 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00166 * 359.97438 * 11 10 9 13 13 C 1.50706 * 119.99762 * 179.97438 * 11 10 9 14 14 C 1.53002 * 109.46925 * 179.97438 * 13 11 10 15 15 H 1.09005 * 110.43681 * 303.90802 * 14 13 11 16 16 C 1.54801 * 110.48888 * 181.22268 * 14 13 11 17 17 C 1.54999 * 102.09165 * 220.43987 * 16 14 13 18 18 O 1.44377 * 103.48974 * 37.02496 * 17 16 14 19 19 C 1.43747 * 106.97598 * 319.93555 * 18 17 16 20 20 H 0.97002 * 119.99804 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47247 * 59.99956 * 9 7 2 22 22 H 1.09004 * 109.47103 * 299.99834 * 9 7 2 23 23 H 0.96999 * 119.99694 * 359.97438 * 10 9 7 24 24 H 1.09000 * 109.47318 * 299.99141 * 13 11 10 25 25 H 1.09000 * 109.47161 * 59.99772 * 13 11 10 26 26 H 1.09002 * 110.90793 * 338.63784 * 16 14 13 27 27 H 1.08996 * 110.91325 * 102.24390 * 16 14 13 28 28 H 1.08997 * 110.62359 * 278.51918 * 17 16 14 29 29 H 1.09005 * 110.61913 * 155.52000 * 17 16 14 30 30 H 1.08997 * 109.88082 * 267.09687 * 19 18 17 31 31 H 1.08997 * 110.00744 * 146.00671 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7536 -4.8834 0.0015 12 8 0.5612 -5.1050 0.0006 13 6 2.7330 -6.0289 0.0022 14 6 1.9679 -7.3539 0.0023 15 1 1.2838 -7.3983 0.8498 16 6 2.9525 -8.5480 0.0339 17 6 2.2877 -9.5432 -0.9510 18 8 1.7463 -8.6875 -1.9802 19 6 1.1992 -7.5330 -1.3213 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 3.1566 -3.4355 0.0021 24 1 3.3602 -5.9712 -0.8875 25 1 3.3590 -5.9711 0.8925 26 1 3.9384 -8.2488 -0.3218 27 1 3.0146 -8.9746 1.0350 28 1 1.4915 -10.0992 -0.4560 29 1 3.0299 -10.2235 -1.3687 30 1 0.1402 -7.6902 -1.1164 31 1 1.3284 -6.6501 -1.9473 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308248235.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:51 Heat of formation + Delta-G solvation = -126.295183 kcal Electronic energy + Delta-G solvation = -14014.665658 eV Core-core repulsion = 11487.324406 eV Total energy + Delta-G solvation = -2527.341252 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.03406 -39.73162 -36.17074 -34.48408 -34.27672 -30.93089 -29.60056 -27.61446 -24.69921 -23.52333 -21.82970 -21.01346 -18.89890 -17.71914 -17.44692 -17.11874 -16.70011 -16.16997 -16.07295 -15.72439 -14.69954 -14.41131 -14.05456 -13.73390 -13.65723 -13.19831 -12.95738 -12.71148 -12.50749 -12.23851 -12.11251 -11.86394 -11.59707 -11.48919 -10.80937 -10.76443 -10.58160 -9.81626 -8.29970 -6.46769 1.42978 1.45388 1.56646 1.79398 2.32483 2.60881 3.05072 3.05243 3.54831 3.76416 3.90562 4.08920 4.30157 4.41825 4.52731 4.63004 4.78271 4.84793 4.90874 4.98311 5.09399 5.14214 5.23243 5.26076 5.49161 5.69711 5.84746 5.95432 6.64901 6.92363 7.23084 7.51541 8.82334 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.080512 B = 0.005344 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 347.688650 B = 5237.811670 C = 5377.952159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.265 3.735 10 N -0.710 5.710 11 C 0.489 3.511 12 O -0.601 6.601 13 C -0.118 4.118 14 C -0.105 4.105 15 H 0.078 0.922 16 C -0.138 4.138 17 C 0.036 3.964 18 O -0.405 6.405 19 C 0.060 3.940 20 H 0.269 0.731 21 H -0.015 1.015 22 H -0.013 1.013 23 H 0.409 0.591 24 H 0.114 0.886 25 H 0.127 0.873 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.044 0.956 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.624 -14.662 0.945 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.142 3.858 10 N -0.360 5.360 11 C 0.277 3.723 12 O -0.483 6.483 13 C -0.157 4.157 14 C -0.124 4.124 15 H 0.097 0.903 16 C -0.176 4.176 17 C -0.040 4.040 18 O -0.325 6.325 19 C -0.017 4.017 20 H 0.077 0.923 21 H 0.003 0.997 22 H 0.005 0.995 23 H 0.245 0.755 24 H 0.132 0.868 25 H 0.145 0.855 26 H 0.114 0.886 27 H 0.123 0.877 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.062 0.938 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.634 -14.728 0.725 17.614 hybrid contribution -0.153 1.246 0.131 1.263 sum 9.481 -13.481 0.856 16.503 Atomic orbital electron populations 1.70143 1.08340 1.28568 1.50041 1.26085 0.95761 1.03980 0.93822 0.85146 0.78514 0.76898 0.78589 1.19649 1.20977 1.17799 1.21640 0.94338 0.90626 1.52844 0.89756 1.18526 0.88797 0.84570 0.93942 1.46246 1.11167 1.05717 1.72840 1.21657 0.90114 0.85151 0.75404 1.90639 1.19546 1.85578 1.52571 1.21780 0.97139 0.89961 1.06865 1.22272 0.97572 0.94729 0.97833 0.90327 1.23216 0.99016 0.93600 1.01735 1.23824 0.97861 0.93521 0.88758 1.88834 1.78296 1.32888 1.32485 1.23050 0.96858 0.88132 0.93676 0.92263 0.99713 0.99534 0.75539 0.86751 0.85494 0.88585 0.87719 0.91760 0.86798 0.93769 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.99 42.27 29.54 68.60 2.03 44.30 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 6 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.56 -30.34 9.28 25.60 0.24 -30.10 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.10 16 9 C 0.26 14.61 5.43 85.63 0.46 15.07 16 10 N -0.71 -29.63 5.55 -466.79 -2.59 -32.22 16 11 C 0.49 18.95 7.34 87.66 0.64 19.60 16 12 O -0.60 -29.08 15.07 -3.03 -0.05 -29.13 16 13 C -0.12 -2.89 4.94 29.85 0.15 -2.74 16 14 C -0.10 -2.57 2.67 -9.80 -0.03 -2.59 16 15 H 0.08 2.12 8.02 -2.38 -0.02 2.10 16 16 C -0.14 -2.19 6.71 31.89 0.21 -1.98 16 17 C 0.04 0.66 7.72 72.67 0.56 1.22 16 18 O -0.41 -11.31 11.52 -148.98 -1.72 -13.03 16 19 C 0.06 1.80 6.31 72.36 0.46 2.26 16 20 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 21 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 22 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 23 H 0.41 13.87 8.32 -92.71 -0.77 13.10 16 24 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.10 1.25 7.87 -2.39 -0.02 1.23 16 27 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 2.15 7.25 -2.39 -0.02 2.13 16 Total: -1.00 -72.74 264.64 1.47 -71.27 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.35 Total: 13.76 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 3.16 Total: 1.37 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -2.30 Total: -88.55 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -1.76 Total: -42.16 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -72.74 1.47 -71.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308248235.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.024 kcal (2) G-P(sol) polarization free energy of solvation -72.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds