Wall clock time and date at job start Sun Mar 29 2020 22:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 110.35831 * 2 1 4 4 C 1.46896 * 110.99925 * 302.32575 * 3 2 1 5 5 C 1.53003 * 109.46953 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47202 * 180.02562 * 5 4 3 7 7 H 1.08002 * 119.99685 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00216 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00069 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99806 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46845 * 90.00621 * 10 8 6 12 12 H 1.48503 * 109.47399 * 210.00111 * 10 8 6 13 13 H 1.48498 * 109.47295 * 330.00717 * 10 8 6 14 14 C 1.54471 * 110.40232 * 122.32955 * 2 1 3 15 15 C 1.54366 * 103.04273 * 119.28307 * 14 2 1 16 16 O 1.45943 * 105.07311 * 17.81732 * 15 14 2 17 17 C 1.34572 * 108.40042 * 327.56184 * 16 15 14 18 18 O 1.20824 * 125.94013 * 213.35526 * 17 16 15 19 19 H 1.09008 * 109.46822 * 59.30465 * 1 2 3 20 20 H 1.09003 * 109.47206 * 179.29757 * 1 2 3 21 21 H 1.08994 * 109.47354 * 299.30399 * 1 2 3 22 22 H 1.00902 * 111.00223 * 66.28723 * 3 2 1 23 23 H 1.09008 * 109.47013 * 60.00841 * 4 3 2 24 24 H 1.08996 * 109.47783 * 299.99939 * 4 3 2 25 25 H 1.08999 * 109.47344 * 60.00500 * 5 4 3 26 26 H 1.09001 * 109.47340 * 300.00471 * 5 4 3 27 27 H 0.97000 * 119.99667 * 179.97438 * 9 8 6 28 28 H 1.09002 * 110.70080 * 237.66896 * 14 2 1 29 29 H 1.09000 * 110.70224 * 0.71768 * 14 2 1 30 30 H 1.08998 * 110.32686 * 136.72072 * 15 14 2 31 31 H 1.09002 * 110.32078 * 258.81787 * 15 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0410 1.3773 0.0000 4 6 1.5367 2.1259 -1.1589 5 6 2.0897 3.5521 -1.1247 6 6 1.5718 4.3203 -2.3132 7 1 0.9143 3.8393 -3.0223 8 6 1.9382 5.6369 -2.4960 9 7 1.4866 6.3072 -3.5335 10 14 3.0760 6.4686 -1.2700 11 1 4.4861 6.2765 -1.6943 12 1 2.7689 7.9205 -1.2155 13 1 2.8777 5.8698 0.0744 14 6 2.0685 -0.7743 1.2234 15 6 2.8794 -1.9201 0.5811 16 8 3.1144 -1.4939 -0.7947 17 6 2.0607 -0.7604 -1.1981 18 8 1.6153 -0.7163 -2.3204 19 1 -0.3633 0.5246 -0.8838 20 1 -0.3634 -1.0276 -0.0126 21 1 -0.3634 0.5029 0.8961 22 1 1.8117 1.8481 0.8625 23 1 0.4476 2.1573 -1.1251 24 1 1.8577 1.6341 -2.0770 25 1 3.1787 3.5204 -1.1587 26 1 1.7691 4.0443 -0.2065 27 1 1.7441 7.2336 -3.6618 28 1 2.7139 -0.1377 1.8287 29 1 1.2472 -1.1683 1.8220 30 1 3.8268 -2.0525 1.1035 31 1 2.3052 -2.8465 0.5992 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308315006.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:49 Heat of formation + Delta-G solvation = -107.927713 kcal Electronic energy + Delta-G solvation = -14496.554590 eV Core-core repulsion = 11970.009811 eV Total energy + Delta-G solvation = -2526.544779 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.23101 -38.63011 -37.99048 -35.37661 -33.59756 -31.07173 -29.62344 -26.91536 -25.58392 -23.58457 -22.19688 -21.10718 -19.02036 -18.12627 -17.84552 -17.27322 -16.34195 -16.28437 -15.67852 -15.45209 -14.81847 -14.69898 -14.55752 -13.91147 -13.42913 -13.35792 -13.20158 -12.92920 -12.86392 -12.34026 -12.04464 -11.77613 -11.69639 -11.48174 -11.37504 -11.08324 -10.79795 -9.56522 -8.31971 -6.38248 0.80804 1.36314 1.38946 1.51184 2.27645 2.35524 2.90854 3.03083 3.16870 3.40155 3.79559 4.04563 4.18340 4.30992 4.45287 4.57213 4.59300 4.70276 4.85159 4.90904 5.00992 5.07212 5.24943 5.41961 5.58170 5.66282 5.87528 6.20584 6.33784 6.39882 6.69855 7.26382 8.85290 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046663 B = 0.007328 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.906350 B = 3820.171458 C = 3975.517440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.049 3.951 3 N -0.664 5.664 4 C 0.079 3.921 5 C 0.000 4.000 6 C -0.541 4.541 7 H 0.022 0.978 8 C 0.003 3.997 9 N -0.952 5.952 10 Si 0.961 3.039 11 H -0.270 1.270 12 H -0.281 1.281 13 H -0.238 1.238 14 C -0.134 4.134 15 C 0.048 3.952 16 O -0.371 6.371 17 C 0.492 3.508 18 O -0.493 6.493 19 H 0.040 0.960 20 H 0.083 0.917 21 H 0.096 0.904 22 H 0.365 0.635 23 H 0.030 0.970 24 H 0.036 0.964 25 H 0.020 0.980 26 H 0.033 0.967 27 H 0.268 0.732 28 H 0.113 0.887 29 H 0.131 0.869 30 H 0.138 0.862 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 -15.973 17.269 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.044 4.044 3 N -0.300 5.300 4 C -0.050 4.050 5 C -0.038 4.038 6 C -0.579 4.579 7 H 0.041 0.959 8 C -0.194 4.194 9 N -0.593 5.593 10 Si 0.784 3.216 11 H -0.196 1.196 12 H -0.207 1.207 13 H -0.161 1.161 14 C -0.172 4.172 15 C -0.024 4.024 16 O -0.289 6.289 17 C 0.333 3.667 18 O -0.376 6.376 19 H 0.059 0.941 20 H 0.102 0.898 21 H 0.114 0.886 22 H 0.187 0.813 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.038 0.962 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.132 0.868 29 H 0.149 0.851 30 H 0.156 0.844 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.130 -16.043 16.243 22.930 hybrid contribution -0.720 0.926 -0.396 1.238 sum 1.410 -15.117 15.848 21.947 Atomic orbital electron populations 1.22403 0.93010 1.04101 1.03439 1.22437 0.95738 0.91412 0.94828 1.60597 1.62253 1.00511 1.06660 1.21724 0.96738 0.94171 0.92357 1.19405 0.96397 0.92219 0.95784 1.21399 1.29755 0.97167 1.09571 0.95916 1.26107 0.97735 0.97931 0.97642 1.70087 1.47069 1.10978 1.31118 0.85504 0.78542 0.77208 0.80395 1.19562 1.20686 1.16063 1.23119 1.02348 0.96565 0.95118 1.24473 1.04400 0.97826 0.75734 1.87254 1.40021 1.66909 1.34693 1.23686 0.76575 0.77259 0.89200 1.90668 1.57618 1.64100 1.25232 0.94116 0.89821 0.88552 0.81309 0.95162 0.94528 0.96178 0.94847 0.92338 0.86827 0.85096 0.84401 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 7.99 71.98 0.58 -3.33 16 2 C 0.05 1.23 0.93 3.54 0.00 1.23 16 3 N -0.66 -20.59 6.04 -470.13 -2.84 -23.43 16 4 C 0.08 3.38 4.94 86.30 0.43 3.80 16 5 C 0.00 -0.01 4.30 29.85 0.13 0.12 16 6 C -0.54 -32.97 9.66 25.60 0.25 -32.72 16 7 H 0.02 1.54 7.99 -2.91 -0.02 1.52 16 8 C 0.00 0.15 5.47 84.65 0.46 0.62 16 9 N -0.95 -61.82 13.96 21.45 0.30 -61.53 16 10 Si 0.96 45.11 27.47 68.60 1.88 47.00 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 14 C -0.13 -1.72 6.55 31.56 0.21 -1.51 16 15 C 0.05 0.65 7.84 72.45 0.57 1.22 16 16 O -0.37 -10.51 11.17 -55.18 -0.62 -11.12 16 17 C 0.49 16.56 6.80 71.49 0.49 17.04 16 18 O -0.49 -21.23 16.78 21.56 0.36 -20.87 16 19 H 0.04 1.24 6.42 -2.38 -0.02 1.23 16 20 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.36 9.15 8.76 -89.69 -0.79 8.37 16 23 H 0.03 1.30 6.32 -2.38 -0.02 1.28 16 24 H 0.04 1.81 6.58 -2.39 -0.02 1.80 16 25 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 26 H 0.03 1.50 7.20 -2.39 -0.02 1.48 16 27 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 28 H 0.11 1.24 7.97 -2.39 -0.02 1.23 16 29 H 0.13 0.77 7.74 -2.39 -0.02 0.75 16 30 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -80.05 258.07 2.48 -77.57 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 0.29 Total: 5.91 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 3.10 Total: -13.52 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -2.54 Total: -84.96 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.25 Total: -31.99 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 47.00 kcal Total: -80.05 2.48 -77.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308315006.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.357 kcal (2) G-P(sol) polarization free energy of solvation -80.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds