Wall clock time and date at job start Sun Mar 29 2020 22:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00093 * 2 1 4 4 H 1.48499 * 109.47125 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47415 * 300.00634 * 3 2 1 6 6 H 1.48505 * 109.46638 * 60.00366 * 3 2 1 7 7 C 1.37881 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46778 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47123 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47499 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00321 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99794 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00156 * 180.02562 * 13 12 11 16 16 C 1.54036 * 113.81709 * 180.02562 * 15 13 12 17 17 O 1.44179 * 85.66382 * 136.73615 * 16 15 13 18 18 C 1.44442 * 93.22864 * 335.92808 * 17 16 15 19 19 H 0.97002 * 120.00223 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46988 * 60.00098 * 9 7 2 21 21 H 1.08995 * 109.47208 * 299.99883 * 9 7 2 22 22 H 1.08998 * 109.47244 * 60.00300 * 10 9 7 23 23 H 1.09000 * 109.47529 * 299.99605 * 10 9 7 24 24 H 1.09004 * 109.46937 * 59.99778 * 11 10 9 25 25 H 1.09001 * 109.47461 * 300.00481 * 11 10 9 26 26 H 0.96996 * 119.99769 * 359.97438 * 12 11 10 27 27 H 1.08992 * 113.00272 * 48.17174 * 15 13 12 28 28 H 1.09002 * 113.86404 * 250.95052 * 16 15 13 29 29 H 1.09002 * 113.86879 * 22.52496 * 16 15 13 30 30 H 1.09008 * 113.74590 * 269.91647 * 18 17 16 31 31 H 1.08995 * 114.06139 * 138.26913 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 7 2.4322 -6.1006 -0.0018 13 6 1.9829 -7.3713 -0.0019 14 8 0.7906 -7.5929 -0.0020 15 6 2.9622 -8.5168 -0.0020 16 6 2.2953 -9.9053 -0.0027 17 8 3.2866 -10.2599 -0.9878 18 6 3.4823 -8.8903 -1.4029 19 1 -0.4850 0.8400 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8896 22 1 2.8725 -3.6047 0.8877 23 1 2.8712 -3.6040 -0.8923 24 1 0.8525 -5.0447 -0.8905 25 1 0.8545 -5.0450 0.8894 26 1 3.3858 -5.9234 -0.0029 27 1 3.7475 -8.4058 0.7456 28 1 2.3973 -10.4440 0.9394 29 1 1.2745 -9.9041 -0.3850 30 1 2.8247 -8.5795 -2.2149 31 1 4.5251 -8.6220 -1.5722 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308372729.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:07 Heat of formation + Delta-G solvation = -92.859167 kcal Electronic energy + Delta-G solvation = -13634.975291 eV Core-core repulsion = 11109.083933 eV Total energy + Delta-G solvation = -2525.891358 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.87802 -39.80991 -36.96849 -35.21071 -33.16029 -31.25643 -28.52787 -27.50236 -25.27895 -23.02755 -22.33283 -20.76433 -18.77137 -18.47747 -17.49160 -17.22312 -16.66312 -16.46893 -16.31482 -15.61499 -15.24062 -14.32927 -13.99890 -13.77698 -13.69978 -13.51980 -12.78907 -12.56071 -12.51509 -12.36757 -12.18465 -11.68746 -11.59086 -11.22997 -10.89039 -10.66024 -10.56605 -10.13908 -8.20063 -6.31594 1.42088 1.42333 1.47080 1.55429 2.15109 2.42531 2.61815 3.14093 3.15680 3.74826 4.07423 4.14126 4.18015 4.20975 4.38203 4.54061 4.57137 4.87821 4.93286 4.96069 5.00381 5.04726 5.16447 5.41038 5.52196 5.69908 5.83814 6.21529 6.52528 6.86440 7.19074 7.38411 8.92285 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.084821 B = 0.004512 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 330.026111 B = 6204.049792 C = 6421.254022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.021 3.979 10 C -0.101 4.101 11 C 0.127 3.873 12 N -0.710 5.710 13 C 0.509 3.491 14 O -0.588 6.588 15 C -0.173 4.173 16 C 0.054 3.946 17 O -0.398 6.398 18 C 0.057 3.943 19 H 0.263 0.737 20 H -0.008 1.008 21 H -0.009 1.009 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.418 0.582 27 H 0.159 0.841 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.315 -15.239 -0.171 18.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.139 4.139 11 C 0.003 3.997 12 N -0.361 5.361 13 C 0.297 3.703 14 O -0.468 6.468 15 C -0.194 4.194 16 C -0.023 4.023 17 O -0.317 6.317 18 C -0.020 4.020 19 H 0.072 0.928 20 H 0.010 0.990 21 H 0.010 0.990 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.255 0.745 27 H 0.176 0.824 28 H 0.136 0.864 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.454 -15.521 -0.253 18.175 hybrid contribution -0.031 1.372 0.077 1.374 sum 9.423 -14.150 -0.176 17.001 Atomic orbital electron populations 1.70118 1.07984 1.27738 1.51789 1.26025 0.95722 1.03580 0.94776 0.85363 0.79241 0.78625 0.77589 1.18110 1.20626 1.20642 1.21717 0.93784 0.91978 1.50320 0.91448 1.18966 0.94518 0.93113 0.95043 1.21592 0.98389 0.91693 1.02243 1.21253 0.92086 0.85740 1.00637 1.46030 1.11307 1.05015 1.73756 1.21133 0.89487 0.84649 0.75061 1.90697 1.19026 1.85378 1.51700 1.24754 0.99218 0.92767 1.02697 1.23942 0.93044 0.91341 0.93953 1.89740 1.58007 1.27226 1.56755 1.24067 1.04115 0.80331 0.93476 0.92827 0.99006 0.99011 0.91258 0.91206 0.93296 0.93281 0.74489 0.82371 0.86446 0.90356 0.90366 0.84966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.79 13.29 21.45 0.28 -56.51 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 3 Si 0.97 43.26 29.54 68.60 2.03 45.28 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.54 -29.69 9.11 25.60 0.23 -29.46 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.09 4.97 29.85 0.15 1.24 16 10 C -0.10 -3.75 5.27 30.59 0.16 -3.59 16 11 C 0.13 4.29 5.67 86.38 0.49 4.78 16 12 N -0.71 -17.68 5.56 -463.06 -2.57 -20.25 16 13 C 0.51 13.30 7.37 87.66 0.65 13.95 16 14 O -0.59 -21.09 15.89 -3.02 -0.05 -21.13 16 15 C -0.17 -2.94 4.39 -10.84 -0.05 -2.99 16 16 C 0.05 1.03 8.56 72.27 0.62 1.64 16 17 O -0.40 -8.22 12.47 -148.98 -1.86 -10.08 16 18 C 0.06 0.89 8.78 72.28 0.63 1.52 16 19 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 20 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 21 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 22 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 23 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.42 7.33 8.47 -92.71 -0.79 6.55 16 27 H 0.16 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.08 1.79 7.40 -2.39 -0.02 1.77 16 30 H 0.08 1.35 8.09 -2.38 -0.02 1.33 16 31 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -70.96 270.94 1.51 -69.45 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 0.33 Total: 5.87 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 3.35 Total: -12.63 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -2.29 Total: -76.76 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -1.91 Total: -31.21 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -70.96 1.51 -69.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308372729.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.410 kcal (2) G-P(sol) polarization free energy of solvation -70.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds