Wall clock time and date at job start Sun Mar 29 2020 21:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00084 * 2 1 4 4 H 1.48498 * 109.47418 * 240.00031 * 3 2 1 5 5 H 1.48499 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46868 * 119.99640 * 3 2 1 7 7 C 1.37877 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99537 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00372 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47192 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47269 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00159 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99690 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00083 * 180.02562 * 12 11 10 15 15 O 1.42901 * 112.85132 * 23.80273 * 14 12 11 16 16 C 1.53782 * 113.61498 * 155.00386 * 14 12 11 17 17 C 1.53781 * 87.08260 * 89.19810 * 16 14 12 18 18 C 1.53786 * 87.17350 * 25.39213 * 17 16 14 19 19 H 0.96995 * 120.00369 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.47188 * 60.00307 * 9 7 2 21 21 H 1.08997 * 109.47134 * 299.99499 * 9 7 2 22 22 H 1.09007 * 109.46844 * 59.99836 * 10 9 7 23 23 H 1.09000 * 109.46994 * 300.00314 * 10 9 7 24 24 H 0.96999 * 119.99832 * 0.02562 * 11 10 9 25 25 H 0.96693 * 113.99751 * 311.20168 * 15 14 12 26 26 H 1.09001 * 113.61250 * 334.64628 * 16 14 12 27 27 H 1.08996 * 113.68722 * 203.75942 * 16 14 12 28 28 H 1.09002 * 113.61445 * 139.98212 * 17 16 14 29 29 H 1.09002 * 113.61408 * 270.79943 * 17 16 14 30 30 H 1.08993 * 113.61491 * 89.15923 * 18 17 16 31 31 H 1.09000 * 113.61138 * 220.06261 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6622 -0.0027 11 7 1.5127 -4.9309 -0.0033 12 6 2.1866 -6.0981 -0.0047 13 8 3.3994 -6.0980 -0.0051 14 6 1.4331 -7.4032 -0.0058 15 8 0.1120 -7.2808 -0.5367 16 6 2.2309 -8.5746 -0.6027 17 6 2.7693 -8.8277 0.8153 18 6 1.4918 -8.1503 1.3391 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5564 -0.8920 21 1 0.6240 -2.5576 0.8880 22 1 2.8719 -3.6052 0.8873 23 1 2.8719 -3.6036 -0.8926 24 1 0.5428 -4.9309 -0.0033 25 1 -0.3946 -6.5458 -0.1651 26 1 2.9979 -8.2639 -1.3121 27 1 1.6050 -9.3820 -0.9827 28 1 2.8404 -9.8844 1.0732 29 1 3.6809 -8.2746 1.0414 30 1 0.6625 -8.8409 1.4915 31 1 1.6633 -7.4977 2.1950 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308388636.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:32 Heat of formation + Delta-G solvation = -77.938896 kcal Electronic energy + Delta-G solvation = -14128.956964 eV Core-core repulsion = 11603.712597 eV Total energy + Delta-G solvation = -2525.244366 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.59245 -37.55717 -35.62033 -34.45861 -32.82488 -29.78100 -26.08111 -25.87086 -24.38828 -21.72008 -20.86515 -19.11700 -18.40082 -16.52693 -15.91848 -15.58137 -14.97594 -14.82244 -14.51851 -14.11829 -13.45633 -13.01312 -12.53169 -12.33291 -12.19441 -11.61851 -11.27012 -11.15081 -11.06388 -10.99109 -10.69677 -10.39125 -10.14906 -9.78206 -9.44658 -9.13281 -8.64464 -8.42383 -6.12823 -4.16177 2.71505 3.29152 3.32583 3.33854 3.41414 4.07174 4.38236 4.47599 4.48972 4.71639 4.83196 5.24244 5.34254 5.59145 5.61610 5.79735 5.90444 5.96422 6.22158 6.26474 6.31378 6.64764 6.76496 7.30337 7.46105 7.55209 7.84231 7.88886 8.21942 8.45721 8.89207 9.48937 10.98732 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.068176 B = 0.005708 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.605420 B = 4904.210205 C = 5139.241636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.717 5.717 12 C 0.503 3.497 13 O -0.537 6.537 14 C 0.080 3.920 15 O -0.543 6.543 16 C -0.105 4.105 17 C -0.137 4.137 18 C -0.150 4.150 19 H 0.263 0.737 20 H 0.023 0.977 21 H 0.023 0.977 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.395 0.605 25 H 0.377 0.623 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.206 -14.475 1.560 14.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.367 5.367 12 C 0.287 3.713 13 O -0.414 6.414 14 C 0.036 3.964 15 O -0.349 6.349 16 C -0.143 4.143 17 C -0.175 4.175 18 C -0.188 4.188 19 H 0.073 0.927 20 H 0.042 0.958 21 H 0.041 0.959 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.229 0.771 25 H 0.225 0.775 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.114 -14.833 1.213 14.924 hybrid contribution -0.351 1.556 0.312 1.625 sum 0.763 -13.278 1.524 13.387 Atomic orbital electron populations 1.69938 1.06101 1.27075 1.50141 1.24992 0.94901 0.99430 0.94877 0.86555 0.79517 0.82574 0.78800 1.20079 1.21192 1.20099 1.20997 0.93210 0.90348 1.51709 0.92288 1.19331 0.94180 0.91085 0.97901 1.21789 0.96119 0.81222 1.00957 1.46317 1.10475 1.06722 1.73232 1.20511 0.88402 0.85359 0.77055 1.90674 1.13408 1.87356 1.49980 1.23039 0.83324 0.93128 0.96889 1.86606 1.24859 1.55173 1.68274 1.22900 0.98049 0.95373 0.97973 1.22749 0.98030 1.01089 0.95607 1.23546 0.99486 0.99630 0.96121 0.92726 0.95848 0.95906 0.92371 0.92354 0.77131 0.77474 0.90003 0.88752 0.90746 0.88665 0.88447 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.55 5.61 -4.04 -0.02 2.53 16 11 N -0.72 -12.37 5.50 -60.29 -0.33 -12.70 16 12 C 0.50 8.59 7.07 -10.99 -0.08 8.51 16 13 O -0.54 -10.83 15.23 5.56 0.08 -10.74 16 14 C 0.08 1.09 1.90 -90.86 -0.17 0.91 16 15 O -0.54 -6.87 13.40 -35.23 -0.47 -7.34 16 16 C -0.11 -1.30 7.27 -25.92 -0.19 -1.49 16 17 C -0.14 -1.55 7.66 -25.92 -0.20 -1.75 16 18 C -0.15 -1.69 7.51 -25.82 -0.19 -1.89 16 19 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 20 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 23 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 24 H 0.39 5.73 6.75 -40.82 -0.28 5.46 16 25 H 0.38 3.63 7.39 45.56 0.34 3.96 16 26 H 0.08 1.10 7.88 -51.93 -0.41 0.69 16 27 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 1.24 7.29 -51.93 -0.38 0.86 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 265.40 15.07 4.00 4.00 Total: -1.00 -31.32 265.40 -6.06 -37.38 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -3.65 Total: 4.53 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -1.41 Total: -6.18 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.40 Total: -37.86 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.39 Total: -18.09 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.32 -6.06 -37.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308388636.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.563 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds