Wall clock time and date at job start Sun Mar 29 2020 21:59:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86797 * 120.00084 * 2 1
4 4 H 1.48498 * 109.47418 * 240.00031 * 3 2 1
5 5 H 1.48499 * 109.47086 * 0.02562 * 3 2 1
6 6 H 1.48498 * 109.46868 * 119.99640 * 3 2 1
7 7 C 1.37877 * 119.99625 * 180.02562 * 2 1 3
8 8 H 1.08007 * 119.99537 * 179.97438 * 7 2 1
9 9 C 1.50699 * 120.00372 * 0.02562 * 7 2 1
10 10 C 1.53005 * 109.47192 * 179.97438 * 9 7 2
11 11 N 1.46498 * 109.47269 * 179.97438 * 10 9 7
12 12 C 1.34773 * 120.00159 * 179.97438 * 11 10 9
13 13 O 1.21280 * 119.99690 * 0.02562 * 12 11 10
14 14 C 1.50699 * 120.00083 * 180.02562 * 12 11 10
15 15 O 1.42901 * 112.85132 * 23.80273 * 14 12 11
16 16 C 1.53782 * 113.61498 * 155.00386 * 14 12 11
17 17 C 1.53781 * 87.08260 * 89.19810 * 16 14 12
18 18 C 1.53786 * 87.17350 * 25.39213 * 17 16 14
19 19 H 0.96995 * 120.00369 * 359.97438 * 1 2 3
20 20 H 1.08999 * 109.47188 * 60.00307 * 9 7 2
21 21 H 1.08997 * 109.47134 * 299.99499 * 9 7 2
22 22 H 1.09007 * 109.46844 * 59.99836 * 10 9 7
23 23 H 1.09000 * 109.46994 * 300.00314 * 10 9 7
24 24 H 0.96999 * 119.99832 * 0.02562 * 11 10 9
25 25 H 0.96693 * 113.99751 * 311.20168 * 15 14 12
26 26 H 1.09001 * 113.61250 * 334.64628 * 16 14 12
27 27 H 1.08996 * 113.68722 * 203.75942 * 16 14 12
28 28 H 1.09002 * 113.61445 * 139.98212 * 17 16 14
29 29 H 1.09002 * 113.61408 * 270.79943 * 17 16 14
30 30 H 1.08993 * 113.61491 * 89.15923 * 18 17 16
31 31 H 1.09000 * 113.61138 * 220.06261 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1029 1.6964 -1.2125
5 1 1.2842 2.7464 0.0006
6 1 3.1028 1.6963 1.2125
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0017
10 6 2.2452 -3.6622 -0.0027
11 7 1.5127 -4.9309 -0.0033
12 6 2.1866 -6.0981 -0.0047
13 8 3.3994 -6.0980 -0.0051
14 6 1.4331 -7.4032 -0.0058
15 8 0.1120 -7.2808 -0.5367
16 6 2.2309 -8.5746 -0.6027
17 6 2.7693 -8.8277 0.8153
18 6 1.4918 -8.1503 1.3391
19 1 -0.4850 0.8400 0.0004
20 1 0.6247 -2.5564 -0.8920
21 1 0.6240 -2.5576 0.8880
22 1 2.8719 -3.6052 0.8873
23 1 2.8719 -3.6036 -0.8926
24 1 0.5428 -4.9309 -0.0033
25 1 -0.3946 -6.5458 -0.1651
26 1 2.9979 -8.2639 -1.3121
27 1 1.6050 -9.3820 -0.9827
28 1 2.8404 -9.8844 1.0732
29 1 3.6809 -8.2746 1.0414
30 1 0.6625 -8.8409 1.4915
31 1 1.6633 -7.4977 2.1950
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308388636.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:59:32
Heat of formation + Delta-G solvation = -77.938896 kcal
Electronic energy + Delta-G solvation = -14128.956964 eV
Core-core repulsion = 11603.712597 eV
Total energy + Delta-G solvation = -2525.244366 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 213.115 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-40.59245 -37.55717 -35.62033 -34.45861 -32.82488 -29.78100 -26.08111 -25.87086
-24.38828 -21.72008 -20.86515 -19.11700 -18.40082 -16.52693 -15.91848 -15.58137
-14.97594 -14.82244 -14.51851 -14.11829 -13.45633 -13.01312 -12.53169 -12.33291
-12.19441 -11.61851 -11.27012 -11.15081 -11.06388 -10.99109 -10.69677 -10.39125
-10.14906 -9.78206 -9.44658 -9.13281 -8.64464 -8.42383 -6.12823 -4.16177
2.71505 3.29152 3.32583 3.33854 3.41414 4.07174 4.38236 4.47599
4.48972 4.71639 4.83196 5.24244 5.34254 5.59145 5.61610 5.79735
5.90444 5.96422 6.22158 6.26474 6.31378 6.64764 6.76496 7.30337
7.46105 7.55209 7.84231 7.88886 8.21942 8.45721 8.89207 9.48937
10.98732
Molecular weight = 213.12amu
Principal moments of inertia in cm(-1)
A = 0.068176 B = 0.005708 C = 0.005447
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 410.605420 B = 4904.210205 C = 5139.241636
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.060 3.940
3 Si 0.898 3.102
4 H -0.275 1.275
5 H -0.286 1.286
6 H -0.276 1.276
7 C -0.524 4.524
8 H 0.059 0.941
9 C 0.012 3.988
10 C 0.121 3.879
11 N -0.717 5.717
12 C 0.503 3.497
13 O -0.537 6.537
14 C 0.080 3.920
15 O -0.543 6.543
16 C -0.105 4.105
17 C -0.137 4.137
18 C -0.150 4.150
19 H 0.263 0.737
20 H 0.023 0.977
21 H 0.023 0.977
22 H 0.058 0.942
23 H 0.058 0.942
24 H 0.395 0.605
25 H 0.377 0.623
26 H 0.081 0.919
27 H 0.094 0.906
28 H 0.074 0.926
29 H 0.095 0.905
30 H 0.097 0.903
31 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.206 -14.475 1.560 14.560
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.142 4.142
3 Si 0.726 3.274
4 H -0.201 1.201
5 H -0.212 1.212
6 H -0.201 1.201
7 C -0.563 4.563
8 H 0.077 0.923
9 C -0.025 4.025
10 C -0.001 4.001
11 N -0.367 5.367
12 C 0.287 3.713
13 O -0.414 6.414
14 C 0.036 3.964
15 O -0.349 6.349
16 C -0.143 4.143
17 C -0.175 4.175
18 C -0.188 4.188
19 H 0.073 0.927
20 H 0.042 0.958
21 H 0.041 0.959
22 H 0.076 0.924
23 H 0.076 0.924
24 H 0.229 0.771
25 H 0.225 0.775
26 H 0.100 0.900
27 H 0.112 0.888
28 H 0.093 0.907
29 H 0.113 0.887
30 H 0.116 0.884
31 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 1.114 -14.833 1.213 14.924
hybrid contribution -0.351 1.556 0.312 1.625
sum 0.763 -13.278 1.524 13.387
Atomic orbital electron populations
1.69938 1.06101 1.27075 1.50141 1.24992 0.94901 0.99430 0.94877
0.86555 0.79517 0.82574 0.78800 1.20079 1.21192 1.20099 1.20997
0.93210 0.90348 1.51709 0.92288 1.19331 0.94180 0.91085 0.97901
1.21789 0.96119 0.81222 1.00957 1.46317 1.10475 1.06722 1.73232
1.20511 0.88402 0.85359 0.77055 1.90674 1.13408 1.87356 1.49980
1.23039 0.83324 0.93128 0.96889 1.86606 1.24859 1.55173 1.68274
1.22900 0.98049 0.95373 0.97973 1.22749 0.98030 1.01089 0.95607
1.23546 0.99486 0.99630 0.96121 0.92726 0.95848 0.95906 0.92371
0.92354 0.77131 0.77474 0.90003 0.88752 0.90746 0.88665 0.88447
0.90839
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16
2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16
3 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16
4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16
5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16
6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16
7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16
8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16
9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16
10 C 0.12 2.55 5.61 -4.04 -0.02 2.53 16
11 N -0.72 -12.37 5.50 -60.29 -0.33 -12.70 16
12 C 0.50 8.59 7.07 -10.99 -0.08 8.51 16
13 O -0.54 -10.83 15.23 5.56 0.08 -10.74 16
14 C 0.08 1.09 1.90 -90.86 -0.17 0.91 16
15 O -0.54 -6.87 13.40 -35.23 -0.47 -7.34 16
16 C -0.11 -1.30 7.27 -25.92 -0.19 -1.49 16
17 C -0.14 -1.55 7.66 -25.92 -0.20 -1.75 16
18 C -0.15 -1.69 7.51 -25.82 -0.19 -1.89 16
19 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16
20 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16
21 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16
22 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16
23 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16
24 H 0.39 5.73 6.75 -40.82 -0.28 5.46 16
25 H 0.38 3.63 7.39 45.56 0.34 3.96 16
26 H 0.08 1.10 7.88 -51.93 -0.41 0.69 16
27 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16
28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
29 H 0.09 1.24 7.29 -51.93 -0.38 0.86 16
30 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16
31 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16
LS Contribution 265.40 15.07 4.00 4.00
Total: -1.00 -31.32 265.40 -6.06 -37.38
By element:
Atomic # 1 Polarization: 8.18 SS G_CDS: -3.65 Total: 4.53 kcal
Atomic # 6 Polarization: -4.77 SS G_CDS: -1.41 Total: -6.18 kcal
Atomic # 7 Polarization: -38.26 SS G_CDS: 0.40 Total: -37.86 kcal
Atomic # 8 Polarization: -17.70 SS G_CDS: -0.39 Total: -18.09 kcal
Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal
Total LS contribution 4.00 Total: 4.00 kcal
Total: -31.32 -6.06 -37.38 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308388636.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.563 kcal
(2) G-P(sol) polarization free energy of solvation -31.318 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.881 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.058 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.376 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.939 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds