Wall clock time and date at job start Sun Mar 29 2020 21:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00084 * 2 1 4 4 H 1.48498 * 109.47418 * 240.00031 * 3 2 1 5 5 H 1.48499 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46868 * 119.99640 * 3 2 1 7 7 C 1.37877 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99537 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00372 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47192 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47269 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00159 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99690 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00083 * 180.02562 * 12 11 10 15 15 O 1.42901 * 112.85132 * 23.80273 * 14 12 11 16 16 C 1.53782 * 113.61498 * 155.00386 * 14 12 11 17 17 C 1.53781 * 87.08260 * 89.19810 * 16 14 12 18 18 C 1.53786 * 87.17350 * 25.39213 * 17 16 14 19 19 H 0.96995 * 120.00369 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.47188 * 60.00307 * 9 7 2 21 21 H 1.08997 * 109.47134 * 299.99499 * 9 7 2 22 22 H 1.09007 * 109.46844 * 59.99836 * 10 9 7 23 23 H 1.09000 * 109.46994 * 300.00314 * 10 9 7 24 24 H 0.96999 * 119.99832 * 0.02562 * 11 10 9 25 25 H 0.96693 * 113.99751 * 311.20168 * 15 14 12 26 26 H 1.09001 * 113.61250 * 334.64628 * 16 14 12 27 27 H 1.08996 * 113.68722 * 203.75942 * 16 14 12 28 28 H 1.09002 * 113.61445 * 139.98212 * 17 16 14 29 29 H 1.09002 * 113.61408 * 270.79943 * 17 16 14 30 30 H 1.08993 * 113.61491 * 89.15923 * 18 17 16 31 31 H 1.09000 * 113.61138 * 220.06261 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6622 -0.0027 11 7 1.5127 -4.9309 -0.0033 12 6 2.1866 -6.0981 -0.0047 13 8 3.3994 -6.0980 -0.0051 14 6 1.4331 -7.4032 -0.0058 15 8 0.1120 -7.2808 -0.5367 16 6 2.2309 -8.5746 -0.6027 17 6 2.7693 -8.8277 0.8153 18 6 1.4918 -8.1503 1.3391 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5564 -0.8920 21 1 0.6240 -2.5576 0.8880 22 1 2.8719 -3.6052 0.8873 23 1 2.8719 -3.6036 -0.8926 24 1 0.5428 -4.9309 -0.0033 25 1 -0.3946 -6.5458 -0.1651 26 1 2.9979 -8.2639 -1.3121 27 1 1.6050 -9.3820 -0.9827 28 1 2.8404 -9.8844 1.0732 29 1 3.6809 -8.2746 1.0414 30 1 0.6625 -8.8409 1.4915 31 1 1.6633 -7.4977 2.1950 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308388636.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:32 Heat of formation + Delta-G solvation = -101.685088 kcal Electronic energy + Delta-G solvation = -14129.986676 eV Core-core repulsion = 11603.712597 eV Total energy + Delta-G solvation = -2526.274079 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.79999 -38.82388 -36.98113 -35.84849 -34.72573 -31.64689 -27.59733 -26.79962 -25.96242 -23.30838 -22.37567 -20.35864 -19.52314 -18.54811 -17.14465 -16.95936 -16.53314 -16.34948 -15.88202 -15.46376 -14.99974 -14.42735 -14.28217 -13.51811 -13.29370 -13.26169 -12.93457 -12.60674 -12.52411 -12.28010 -12.15605 -11.93470 -11.69484 -11.48225 -11.13730 -10.62157 -10.52696 -10.14169 -8.25789 -6.36643 1.37342 1.41448 1.43457 1.51502 2.01841 2.41383 3.09143 3.10248 3.41074 3.50267 3.66174 3.81692 4.35300 4.42813 4.45566 4.71660 4.75781 4.79347 4.92711 4.98445 5.03064 5.16909 5.41220 5.42627 5.53853 5.74930 6.12527 6.27495 6.65486 6.75888 7.07165 7.32907 8.85795 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.068176 B = 0.005708 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.605420 B = 4904.210205 C = 5139.241636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.550 4.550 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.140 3.860 11 N -0.712 5.712 12 C 0.499 3.501 13 O -0.571 6.571 14 C 0.078 3.922 15 O -0.546 6.546 16 C -0.106 4.106 17 C -0.134 4.134 18 C -0.138 4.138 19 H 0.266 0.734 20 H 0.009 0.991 21 H 0.012 0.988 22 H 0.050 0.950 23 H 0.046 0.954 24 H 0.408 0.592 25 H 0.389 0.611 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.124 0.876 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.005 -15.285 1.869 15.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.589 4.589 8 H 0.077 0.923 9 C -0.015 4.015 10 C 0.016 3.984 11 N -0.364 5.364 12 C 0.285 3.715 13 O -0.451 6.451 14 C 0.034 3.966 15 O -0.353 6.353 16 C -0.144 4.144 17 C -0.171 4.171 18 C -0.176 4.176 19 H 0.075 0.925 20 H 0.027 0.973 21 H 0.030 0.970 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.245 0.755 25 H 0.239 0.761 26 H 0.083 0.917 27 H 0.135 0.865 28 H 0.122 0.878 29 H 0.090 0.910 30 H 0.142 0.858 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.889 -15.658 1.525 15.757 hybrid contribution -0.314 1.782 0.201 1.820 sum 0.575 -13.877 1.726 13.995 Atomic orbital electron populations 1.70040 1.07521 1.28144 1.50775 1.25854 0.95787 1.03054 0.94294 0.85503 0.78323 0.78151 0.79113 1.19423 1.20516 1.19312 1.21429 0.93580 0.91936 1.51906 0.92340 1.19138 0.94197 0.91644 0.96500 1.21283 0.95133 0.81976 0.99960 1.46127 1.11141 1.05761 1.73400 1.21264 0.88254 0.86297 0.75642 1.90656 1.15120 1.87954 1.51328 1.23027 0.83368 0.91125 0.99067 1.86596 1.24267 1.55825 1.68653 1.23002 0.97804 0.95318 0.98256 1.22707 0.97023 1.02587 0.94785 1.23576 1.00303 0.99366 0.94346 0.92471 0.97292 0.97007 0.93179 0.93579 0.75501 0.76064 0.91735 0.86505 0.87793 0.90967 0.85805 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.78 13.29 21.45 0.28 -53.50 16 2 C 0.01 0.51 5.46 84.65 0.46 0.97 16 3 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.55 -30.54 9.11 25.60 0.23 -30.31 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.02 1.13 5.09 29.85 0.15 1.28 16 10 C 0.14 5.98 5.61 86.38 0.48 6.46 16 11 N -0.71 -24.47 5.50 -463.05 -2.55 -27.01 16 12 C 0.50 16.86 7.07 87.66 0.62 17.48 16 13 O -0.57 -23.25 15.23 -3.03 -0.05 -23.30 16 14 C 0.08 1.98 1.90 -10.95 -0.02 1.96 16 15 O -0.55 -12.58 13.40 -148.98 -2.00 -14.58 16 16 C -0.11 -2.42 7.27 31.12 0.23 -2.19 16 17 C -0.13 -2.74 7.66 31.12 0.24 -2.50 16 18 C -0.14 -2.76 7.51 31.18 0.23 -2.53 16 19 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 20 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 21 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 22 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 23 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.41 11.64 6.75 -92.71 -0.63 11.01 16 25 H 0.39 6.70 7.39 -74.06 -0.55 6.16 16 26 H 0.06 1.69 7.88 -2.39 -0.02 1.67 16 27 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.83 7.29 -2.39 -0.02 1.82 16 30 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 Total: -1.00 -66.41 265.40 0.31 -66.10 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -0.04 Total: 16.36 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 2.63 Total: -9.36 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -2.26 Total: -80.51 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -2.04 Total: -37.88 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -66.41 0.31 -66.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308388636.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.585 kcal (2) G-P(sol) polarization free energy of solvation -66.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds