Wall clock time and date at job start Sun Mar 29 2020 22:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47256 * 2 1 4 4 H 1.09001 * 109.46504 * 305.69514 * 3 2 1 5 5 C 1.50701 * 109.47248 * 185.69721 * 3 2 1 6 6 H 1.07993 * 119.99819 * 274.99973 * 5 3 2 7 7 C 1.37878 * 119.99898 * 95.00661 * 5 3 2 8 8 N 1.31520 * 119.99664 * 184.83315 * 7 5 3 9 9 Si 1.86799 * 120.00288 * 4.82344 * 7 5 3 10 10 H 1.48497 * 109.46931 * 84.86770 * 9 7 5 11 11 H 1.48495 * 109.47245 * 204.86564 * 9 7 5 12 12 H 1.48503 * 109.47223 * 324.86803 * 9 7 5 13 13 N 1.46503 * 109.47308 * 65.69330 * 3 2 1 14 14 C 1.34776 * 119.99819 * 275.00197 * 13 3 2 15 15 O 1.21277 * 120.00145 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99650 * 179.97438 * 14 13 3 17 17 H 1.08994 * 112.68010 * 63.99059 * 16 14 13 18 18 C 1.53374 * 113.38943 * 293.41898 * 16 14 13 19 19 C 1.53371 * 81.25912 * 218.61547 * 18 16 14 20 20 O 1.43350 * 113.38985 * 194.50689 * 16 14 13 21 21 H 1.08996 * 109.46958 * 299.99876 * 1 2 3 22 22 H 1.08993 * 109.47070 * 60.00579 * 1 2 3 23 23 H 1.09005 * 109.46605 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47231 * 239.99650 * 2 1 3 25 25 H 1.09002 * 109.47192 * 119.99617 * 2 1 3 26 26 H 0.96997 * 119.99421 * 179.97438 * 8 7 5 27 27 H 0.96991 * 119.99861 * 95.00147 * 13 3 2 28 28 H 1.08999 * 114.56745 * 331.70964 * 18 16 14 29 29 H 1.08999 * 114.56295 * 105.52678 * 18 16 14 30 30 H 1.08996 * 113.39578 * 271.58978 * 19 18 16 31 31 H 1.09001 * 113.42978 * 141.38980 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9848 -0.8346 5 6 3.5404 1.4448 -0.1410 6 1 4.1651 1.3334 0.7328 7 6 4.1156 1.5894 -1.3858 8 7 5.4204 1.4964 -1.5220 9 14 3.0417 1.9171 -2.8786 10 1 2.7753 3.3740 -2.9865 11 1 3.7400 1.4496 -4.1030 12 1 1.7560 1.1882 -2.7332 13 7 1.6668 2.0925 1.2588 14 6 0.4509 2.6589 1.3901 15 8 -0.3344 2.6301 0.4663 16 6 0.0668 3.3270 2.6852 17 1 0.6861 4.1953 2.9099 18 6 -0.0621 2.3493 3.8598 19 6 -1.2430 3.2698 4.1921 20 8 -1.3387 3.5858 2.7970 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 5.8250 1.5978 -2.3977 27 1 2.2948 2.1151 1.9976 28 1 -0.3438 1.3351 3.5765 29 1 0.7592 2.3897 4.5753 30 1 -0.9658 4.1231 4.8110 31 1 -2.1131 2.7371 4.5758 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308392114.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:07 Heat of formation + Delta-G solvation = -53.615391 kcal Electronic energy + Delta-G solvation = -14731.719814 eV Core-core repulsion = 12207.530194 eV Total energy + Delta-G solvation = -2524.189620 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.94767 -38.46810 -35.10904 -32.40970 -31.62523 -29.92060 -27.87498 -26.52645 -22.83649 -21.70938 -20.28117 -19.56328 -17.78222 -16.62388 -16.36460 -16.03050 -15.02794 -14.65792 -14.44252 -13.80472 -12.88597 -12.78147 -12.68923 -12.40812 -11.94318 -11.81469 -11.46647 -11.02867 -10.94897 -10.69857 -10.66542 -10.00468 -9.93932 -9.85299 -9.22760 -8.94490 -8.71202 -8.02980 -6.25814 -4.29624 3.15563 3.26710 3.33892 3.41938 3.55676 4.10602 4.26590 4.31521 4.83720 5.05955 5.17965 5.18481 5.39114 5.56081 5.69665 5.97154 6.00360 6.04966 6.08904 6.24839 6.63779 6.78357 6.96244 7.00017 7.27635 7.34525 7.54711 8.11599 8.54008 8.74714 8.96265 9.36482 10.85717 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044083 B = 0.008895 C = 0.008627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.016179 B = 3147.094031 C = 3245.027447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.237 3.763 4 H 0.051 0.949 5 C -0.531 4.531 6 H 0.079 0.921 7 C 0.082 3.918 8 N -0.888 5.888 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.698 5.698 14 C 0.499 3.501 15 O -0.536 6.536 16 C 0.038 3.962 17 H 0.112 0.888 18 C -0.174 4.174 19 C 0.024 3.976 20 O -0.342 6.342 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.030 0.970 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.268 0.732 27 H 0.393 0.607 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.110 1.149 10.409 13.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.135 3.865 4 H 0.069 0.931 5 C -0.569 4.569 6 H 0.097 0.903 7 C -0.123 4.123 8 N -0.524 5.524 9 Si 0.699 3.301 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.348 5.348 14 C 0.283 3.717 15 O -0.414 6.414 16 C -0.024 4.024 17 H 0.130 0.870 18 C -0.212 4.212 19 C -0.053 4.053 20 O -0.259 6.259 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.050 0.950 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.226 0.774 28 H 0.121 0.879 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.724 1.210 9.392 12.876 hybrid contribution 0.039 0.209 -0.360 0.418 sum -8.685 1.419 9.032 12.611 Atomic orbital electron populations 1.21911 0.97404 0.98853 1.02106 1.22074 0.93643 0.99402 1.01263 1.19192 0.95516 0.89117 0.82694 0.93132 1.21003 0.88613 1.51822 0.95490 0.90289 1.24935 0.94880 0.93620 0.98817 1.69883 1.09753 1.48238 1.24537 0.86915 0.81291 0.79708 0.82202 1.19835 1.21153 1.18318 1.46525 1.13971 1.56023 1.18303 1.20240 0.83102 0.79843 0.88536 1.90685 1.50657 1.59313 1.40752 1.23265 0.85737 0.98430 0.94933 0.87037 1.24313 0.99708 1.00086 0.97099 1.23578 0.98890 0.97488 0.85336 1.90041 1.22029 1.91398 1.22436 0.93207 0.93102 0.95049 0.92035 0.92976 0.92205 0.77368 0.87890 0.89309 0.90094 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.53 37.16 0.32 -2.64 16 2 C -0.12 -2.70 5.59 -26.73 -0.15 -2.85 16 3 C 0.24 5.57 1.89 -69.08 -0.13 5.44 16 4 H 0.05 1.32 4.73 -51.93 -0.25 1.07 16 5 C -0.53 -14.08 9.05 -34.44 -0.31 -14.39 16 6 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 7 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 8 N -0.89 -25.92 13.96 55.43 0.77 -25.15 16 9 Si 0.87 21.60 26.99 -169.99 -4.59 17.02 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.26 -6.34 6.82 56.52 0.39 -5.96 16 13 N -0.70 -13.75 5.03 -54.93 -0.28 -14.03 16 14 C 0.50 9.75 5.98 -10.98 -0.07 9.68 16 15 O -0.54 -12.74 13.90 -11.00 -0.15 -12.89 16 16 C 0.04 0.56 4.51 -40.43 -0.18 0.38 16 17 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 18 C -0.17 -1.91 8.18 -26.35 -0.22 -2.13 16 19 C 0.02 0.26 8.74 24.61 0.21 0.47 16 20 O -0.34 -5.56 12.27 -51.79 -0.64 -6.20 16 21 H 0.05 1.01 5.63 -51.93 -0.29 0.72 16 22 H 0.05 1.11 7.89 -51.93 -0.41 0.70 16 23 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.39 6.66 8.59 -40.82 -0.35 6.31 16 28 H 0.10 1.21 8.12 -51.93 -0.42 0.79 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 259.44 15.07 3.91 3.91 Total: -1.00 -32.25 259.44 -5.84 -38.10 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -4.25 Total: 3.08 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -0.62 Total: -3.84 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.50 Total: -39.17 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.79 Total: -19.09 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.59 Total: 17.02 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.25 -5.84 -38.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308392114.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.519 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds