Wall clock time and date at job start Sun Mar 29 2020 22:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47256 * 2 1 4 4 H 1.09001 * 109.46504 * 305.69514 * 3 2 1 5 5 C 1.50701 * 109.47248 * 185.69721 * 3 2 1 6 6 H 1.07993 * 119.99819 * 274.99973 * 5 3 2 7 7 C 1.37878 * 119.99898 * 95.00661 * 5 3 2 8 8 N 1.31520 * 119.99664 * 184.83315 * 7 5 3 9 9 Si 1.86799 * 120.00288 * 4.82344 * 7 5 3 10 10 H 1.48497 * 109.46931 * 84.86770 * 9 7 5 11 11 H 1.48495 * 109.47245 * 204.86564 * 9 7 5 12 12 H 1.48503 * 109.47223 * 324.86803 * 9 7 5 13 13 N 1.46503 * 109.47308 * 65.69330 * 3 2 1 14 14 C 1.34776 * 119.99819 * 275.00197 * 13 3 2 15 15 O 1.21277 * 120.00145 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99650 * 179.97438 * 14 13 3 17 17 H 1.08994 * 112.68010 * 63.99059 * 16 14 13 18 18 C 1.53374 * 113.38943 * 293.41898 * 16 14 13 19 19 C 1.53371 * 81.25912 * 218.61547 * 18 16 14 20 20 O 1.43350 * 113.38985 * 194.50689 * 16 14 13 21 21 H 1.08996 * 109.46958 * 299.99876 * 1 2 3 22 22 H 1.08993 * 109.47070 * 60.00579 * 1 2 3 23 23 H 1.09005 * 109.46605 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47231 * 239.99650 * 2 1 3 25 25 H 1.09002 * 109.47192 * 119.99617 * 2 1 3 26 26 H 0.96997 * 119.99421 * 179.97438 * 8 7 5 27 27 H 0.96991 * 119.99861 * 95.00147 * 13 3 2 28 28 H 1.08999 * 114.56745 * 331.70964 * 18 16 14 29 29 H 1.08999 * 114.56295 * 105.52678 * 18 16 14 30 30 H 1.08996 * 113.39578 * 271.58978 * 19 18 16 31 31 H 1.09001 * 113.42978 * 141.38980 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9848 -0.8346 5 6 3.5404 1.4448 -0.1410 6 1 4.1651 1.3334 0.7328 7 6 4.1156 1.5894 -1.3858 8 7 5.4204 1.4964 -1.5220 9 14 3.0417 1.9171 -2.8786 10 1 2.7753 3.3740 -2.9865 11 1 3.7400 1.4496 -4.1030 12 1 1.7560 1.1882 -2.7332 13 7 1.6668 2.0925 1.2588 14 6 0.4509 2.6589 1.3901 15 8 -0.3344 2.6301 0.4663 16 6 0.0668 3.3270 2.6852 17 1 0.6861 4.1953 2.9099 18 6 -0.0621 2.3493 3.8598 19 6 -1.2430 3.2698 4.1921 20 8 -1.3387 3.5858 2.7970 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 5.8250 1.5978 -2.3977 27 1 2.2948 2.1151 1.9976 28 1 -0.3438 1.3351 3.5765 29 1 0.7592 2.3897 4.5753 30 1 -0.9658 4.1231 4.8110 31 1 -2.1131 2.7371 4.5758 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308392114.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:07 Heat of formation + Delta-G solvation = -77.557121 kcal Electronic energy + Delta-G solvation = -14732.758005 eV Core-core repulsion = 12207.530194 eV Total energy + Delta-G solvation = -2525.227811 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.07774 -40.00827 -36.90708 -34.42222 -33.30051 -31.03019 -29.56308 -27.84147 -24.69855 -22.89356 -21.68093 -21.21614 -19.46782 -18.10521 -17.81045 -17.28881 -16.60228 -16.16999 -16.02112 -15.44289 -14.79714 -14.14572 -13.99004 -13.80552 -13.65796 -13.61263 -12.97299 -12.70365 -12.50580 -12.36590 -11.89316 -11.85671 -11.70252 -11.22598 -10.98132 -10.85417 -10.42372 -9.74453 -8.40541 -6.45597 1.26561 1.31971 1.42748 1.69676 2.21814 2.25570 2.96617 3.15193 3.18556 3.84047 4.02016 4.29388 4.33266 4.39226 4.46105 4.52470 4.78511 4.81466 4.86642 4.97723 5.09150 5.17964 5.23083 5.25831 5.40561 5.54018 5.75496 6.12709 6.59778 6.88964 7.20441 7.45805 8.74219 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044083 B = 0.008895 C = 0.008627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.016179 B = 3147.094031 C = 3245.027447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.122 4.122 3 C 0.240 3.760 4 H 0.025 0.975 5 C -0.525 4.525 6 H 0.062 0.938 7 C 0.037 3.963 8 N -0.927 5.927 9 Si 0.920 3.080 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.259 1.259 13 N -0.694 5.694 14 C 0.494 3.506 15 O -0.584 6.584 16 C 0.036 3.964 17 H 0.141 0.859 18 C -0.159 4.159 19 C 0.025 3.975 20 O -0.385 6.385 21 H 0.047 0.953 22 H 0.027 0.973 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.067 0.933 26 H 0.271 0.729 27 H 0.408 0.592 28 H 0.092 0.908 29 H 0.125 0.875 30 H 0.112 0.888 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.969 1.152 12.182 15.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.161 4.161 3 C 0.136 3.864 4 H 0.043 0.957 5 C -0.563 4.563 6 H 0.080 0.920 7 C -0.164 4.164 8 N -0.566 5.566 9 Si 0.746 3.254 10 H -0.203 1.203 11 H -0.202 1.202 12 H -0.183 1.183 13 N -0.344 5.344 14 C 0.281 3.719 15 O -0.465 6.465 16 C -0.025 4.025 17 H 0.159 0.841 18 C -0.197 4.197 19 C -0.051 4.051 20 O -0.304 6.304 21 H 0.066 0.934 22 H 0.047 0.953 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.244 0.756 28 H 0.111 0.889 29 H 0.143 0.857 30 H 0.130 0.870 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.581 1.213 11.207 14.794 hybrid contribution 0.281 0.220 -0.818 0.893 sum -9.300 1.433 10.389 14.017 Atomic orbital electron populations 1.21772 0.96151 1.00275 1.00916 1.21983 0.94644 0.97948 1.01523 1.18935 0.93391 0.90330 0.83726 0.95682 1.21201 0.90093 1.50308 0.94692 0.91983 1.25530 0.95648 0.94034 1.01179 1.69965 1.11046 1.50299 1.25249 0.86152 0.79989 0.79167 0.80131 1.20269 1.20168 1.18298 1.46220 1.14836 1.55919 1.17454 1.21144 0.82000 0.78911 0.89890 1.90660 1.51890 1.60971 1.42933 1.23460 0.85787 1.00314 0.92908 0.84143 1.24284 1.01096 0.98727 0.95567 1.23887 0.99448 0.98596 0.83140 1.90021 1.22697 1.91757 1.25934 0.93363 0.95341 0.92211 0.93090 0.91386 0.92013 0.75621 0.88932 0.85707 0.87024 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.28 8.53 71.98 0.61 -4.66 16 2 C -0.12 -5.15 5.59 30.59 0.17 -4.98 16 3 C 0.24 11.19 1.89 44.25 0.08 11.28 16 4 H 0.03 1.32 4.73 -2.39 -0.01 1.31 16 5 C -0.52 -27.84 9.05 25.60 0.23 -27.61 16 6 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 7 C 0.04 2.06 5.47 84.65 0.46 2.52 16 8 N -0.93 -54.66 13.96 21.45 0.30 -54.36 16 9 Si 0.92 44.96 26.99 68.60 1.85 46.81 16 10 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.26 -12.51 6.82 99.48 0.68 -11.83 16 13 N -0.69 -26.52 5.03 -446.09 -2.24 -28.76 16 14 C 0.49 18.77 5.98 87.66 0.52 19.30 16 15 O -0.58 -27.77 13.90 12.81 0.18 -27.59 16 16 C 0.04 0.98 4.51 21.72 0.10 1.08 16 17 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 18 C -0.16 -2.90 8.18 30.84 0.25 -2.65 16 19 C 0.03 0.44 8.74 63.85 0.56 1.00 16 20 O -0.39 -11.80 12.27 -133.15 -1.63 -13.43 16 21 H 0.05 1.90 5.63 -2.39 -0.01 1.89 16 22 H 0.03 1.22 7.89 -2.39 -0.02 1.20 16 23 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 24 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 27 H 0.41 13.09 8.59 -92.71 -0.80 12.29 16 28 H 0.09 1.91 8.12 -2.39 -0.02 1.89 16 29 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -70.65 259.44 1.75 -68.90 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.30 Total: 13.15 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 3.00 Total: -4.72 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -1.94 Total: -83.12 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -1.46 Total: -41.02 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.85 Total: 46.81 kcal Total: -70.65 1.75 -68.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308392114.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.658 kcal (2) G-P(sol) polarization free energy of solvation -70.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds