Wall clock time and date at job start Sun Mar 29 2020 21:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35725 * 117.00137 * 2 1 4 4 C 1.41797 * 126.77441 * 179.97438 * 3 2 1 5 5 C 1.36829 * 103.80175 * 179.71633 * 4 3 2 6 6 C 1.47284 * 126.89845 * 180.26179 * 5 4 3 7 7 O 1.21548 * 119.99615 * 359.97438 * 6 5 4 8 8 O 1.34766 * 120.00240 * 180.02562 * 6 5 4 9 9 C 1.34782 * 117.00258 * 179.97438 * 8 6 5 10 10 H 1.08006 * 120.00131 * 0.02562 * 9 8 6 11 11 C 1.38883 * 120.00466 * 179.97438 * 9 8 6 12 12 N 1.31374 * 119.99696 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00238 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46807 * 60.00589 * 13 11 9 15 15 H 1.48501 * 109.46880 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47129 * 300.00097 * 13 11 9 17 17 O 1.34700 * 106.20610 * 0.26097 * 5 4 3 18 18 N 1.20876 * 111.62349 * 0.02562 * 17 5 4 19 19 H 1.08997 * 109.47167 * 299.99822 * 1 2 3 20 20 H 1.09003 * 109.47504 * 59.99912 * 1 2 3 21 21 H 1.09001 * 109.46964 * 179.97438 * 1 2 3 22 22 H 1.08002 * 128.10333 * 359.97438 * 4 3 2 23 23 H 0.96997 * 119.99939 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4426 1.4500 0.0005 5 6 3.5387 2.8149 -0.0063 6 6 4.7758 3.6142 -0.0142 7 8 5.8575 3.0599 -0.0147 8 8 4.7084 4.9602 -0.0199 9 6 5.8771 5.6314 -0.0265 10 1 6.8113 5.0893 -0.0274 11 6 5.8804 7.0202 -0.0331 12 7 4.7442 7.6797 -0.0324 13 14 7.5003 7.9504 -0.0429 14 1 8.2740 7.5842 -1.2563 15 1 7.2323 9.4110 -0.0483 16 1 8.2822 7.5956 1.1687 17 8 2.2749 3.2808 -0.0044 18 7 1.4683 2.3805 0.0031 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 4.2436 0.7256 0.0014 23 1 4.7465 8.6497 -0.0374 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308395559.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:20 Heat of formation + Delta-G solvation = -43.048517 kcal Electronic energy + Delta-G solvation = -13561.337245 eV Core-core repulsion = 10765.939650 eV Total energy + Delta-G solvation = -2795.397595 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.052 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.53504 -39.07829 -38.72999 -35.51585 -32.81879 -32.43464 -31.38541 -27.62498 -26.00019 -23.57350 -22.85795 -20.66913 -18.53832 -17.90786 -17.54279 -16.53503 -15.82125 -15.44883 -15.21952 -14.53116 -14.49960 -14.36036 -13.23604 -12.77230 -12.22408 -11.83168 -11.80340 -11.40564 -11.14520 -10.67405 -10.56497 -10.09203 -9.50792 -9.43514 -9.11486 -8.78636 -6.64661 -4.26835 1.18816 2.37936 2.81212 3.02962 3.08739 3.13037 3.22947 3.67445 3.86521 4.29882 4.58124 4.95935 5.02810 5.10263 5.12518 5.41242 5.56716 5.92958 6.46406 7.03968 7.16035 7.67287 8.31596 8.46623 8.80866 9.54216 10.50873 Molecular weight = 213.05amu Principal moments of inertia in cm(-1) A = 0.085313 B = 0.006650 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 328.126315 B = 4209.592563 C = 4522.562302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.284 6.284 3 C 0.200 3.800 4 C -0.187 4.187 5 C 0.013 3.987 6 C 0.456 3.544 7 O -0.529 6.529 8 O -0.183 6.183 9 C -0.375 4.375 10 H 0.105 0.895 11 C 0.044 3.956 12 N -0.841 5.841 13 Si 0.953 3.047 14 H -0.266 1.266 15 H -0.276 1.276 16 H -0.266 1.266 17 O 0.125 5.875 18 N -0.404 5.404 19 H 0.058 0.942 20 H 0.058 0.942 21 H 0.103 0.897 22 H 0.186 0.814 23 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.015 -8.430 0.026 9.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.191 6.191 3 C 0.003 3.997 4 C -0.210 4.210 5 C -0.051 4.051 6 C 0.303 3.697 7 O -0.427 6.427 8 O -0.088 6.088 9 C -0.450 4.450 10 H 0.122 0.878 11 C -0.163 4.163 12 N -0.475 5.475 13 Si 0.776 3.224 14 H -0.191 1.191 15 H -0.201 1.201 16 H -0.191 1.191 17 O 0.060 5.940 18 N -0.129 5.129 19 H 0.077 0.923 20 H 0.077 0.923 21 H 0.121 0.879 22 H 0.203 0.797 23 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.994 -8.205 0.033 10.161 hybrid contribution 1.013 0.008 -0.006 1.013 sum -4.980 -8.197 0.027 9.591 Atomic orbital electron populations 1.23033 0.77159 1.03728 1.02405 1.86173 1.22327 1.20846 1.89768 1.21780 0.90613 0.85715 1.01591 1.21924 0.94089 0.94581 1.10357 1.23253 0.85799 0.92471 1.03608 1.18700 0.84652 0.83141 0.83228 1.90735 1.26928 1.72455 1.52604 1.83927 1.36703 1.15546 1.72615 1.21450 0.83523 0.88519 1.51509 0.87769 1.25545 0.99760 0.95483 0.95542 1.69974 1.26066 1.08969 1.42518 0.85598 0.79310 0.77797 0.79701 1.19079 1.20087 1.19082 1.85069 1.12019 1.28889 1.67974 1.73977 1.16671 0.96525 1.25693 0.92287 0.92294 0.87891 0.79687 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.73 101.05 1.08 1.43 14 2 O -0.28 -4.21 10.57 -18.88 -0.20 -4.41 14 3 C 0.20 3.48 7.99 -16.73 -0.13 3.34 14 4 C -0.19 -3.38 10.97 -38.73 -0.42 -3.81 14 5 C 0.01 0.28 7.36 -36.42 -0.27 0.01 14 6 C 0.46 11.41 7.89 34.41 0.27 11.68 14 7 O -0.53 -13.85 16.16 -19.30 -0.31 -14.16 14 8 O -0.18 -5.17 9.75 -22.31 -0.22 -5.38 14 9 C -0.37 -10.57 9.65 30.97 0.30 -10.27 14 10 H 0.10 2.89 6.86 -52.48 -0.36 2.53 14 11 C 0.04 1.19 5.50 -17.51 -0.10 1.09 14 12 N -0.84 -23.55 13.67 55.49 0.76 -22.79 14 13 Si 0.95 20.00 29.55 -169.99 -5.02 14.98 14 14 H -0.27 -5.45 7.11 56.52 0.40 -5.05 14 15 H -0.28 -5.55 7.11 56.52 0.40 -5.15 14 16 H -0.27 -5.45 7.11 56.52 0.40 -5.05 14 17 O 0.13 2.62 11.22 15.39 0.17 2.79 14 18 N -0.40 -7.63 11.50 30.48 0.35 -7.28 14 19 H 0.06 0.63 8.14 -51.93 -0.42 0.21 14 20 H 0.06 0.63 8.14 -51.93 -0.42 0.20 14 21 H 0.10 0.76 8.14 -51.93 -0.42 0.33 14 22 H 0.19 2.92 8.06 -52.49 -0.42 2.50 14 23 H 0.28 7.04 8.31 -40.82 -0.34 6.70 14 LS Contribution 231.48 15.07 3.49 3.49 Total: -1.00 -30.64 231.48 -1.44 -32.08 By element: Atomic # 1 Polarization: -1.58 SS G_CDS: -1.19 Total: -2.77 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 0.73 Total: 3.47 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 1.11 Total: -30.08 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.56 Total: -21.17 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -30.64 -1.44 -32.08 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308395559.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.973 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds