Wall clock time and date at job start Sun Mar 29 2020 21:41:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.35725 * 117.00137 * 2 1
4 4 C 1.41797 * 126.77441 * 179.97438 * 3 2 1
5 5 C 1.36829 * 103.80175 * 179.71633 * 4 3 2
6 6 C 1.47284 * 126.89845 * 180.26179 * 5 4 3
7 7 O 1.21548 * 119.99615 * 359.97438 * 6 5 4
8 8 O 1.34766 * 120.00240 * 180.02562 * 6 5 4
9 9 C 1.34782 * 117.00258 * 179.97438 * 8 6 5
10 10 H 1.08006 * 120.00131 * 0.02562 * 9 8 6
11 11 C 1.38883 * 120.00466 * 179.97438 * 9 8 6
12 12 N 1.31374 * 119.99696 * 0.02562 * 11 9 8
13 13 Si 1.86800 * 120.00238 * 180.02562 * 11 9 8
14 14 H 1.48499 * 109.46807 * 60.00589 * 13 11 9
15 15 H 1.48501 * 109.46880 * 180.02562 * 13 11 9
16 16 H 1.48497 * 109.47129 * 300.00097 * 13 11 9
17 17 O 1.34700 * 106.20610 * 0.26097 * 5 4 3
18 18 N 1.20876 * 111.62349 * 0.02562 * 17 5 4
19 19 H 1.08997 * 109.47167 * 299.99822 * 1 2 3
20 20 H 1.09003 * 109.47504 * 59.99912 * 1 2 3
21 21 H 1.09001 * 109.46964 * 179.97438 * 1 2 3
22 22 H 1.08002 * 128.10333 * 359.97438 * 4 3 2
23 23 H 0.96997 * 119.99939 * 180.02562 * 12 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0452 1.2093 0.0000
4 6 3.4426 1.4500 0.0005
5 6 3.5387 2.8149 -0.0063
6 6 4.7758 3.6142 -0.0142
7 8 5.8575 3.0599 -0.0147
8 8 4.7084 4.9602 -0.0199
9 6 5.8771 5.6314 -0.0265
10 1 6.8113 5.0893 -0.0274
11 6 5.8804 7.0202 -0.0331
12 7 4.7442 7.6797 -0.0324
13 14 7.5003 7.9504 -0.0429
14 1 8.2740 7.5842 -1.2563
15 1 7.2323 9.4110 -0.0483
16 1 8.2822 7.5956 1.1687
17 8 2.2749 3.2808 -0.0044
18 7 1.4683 2.3805 0.0031
19 1 -0.3633 0.5138 0.8900
20 1 -0.3634 0.5138 -0.8900
21 1 -0.3633 -1.0277 -0.0005
22 1 4.2436 0.7256 0.0014
23 1 4.7465 8.6497 -0.0374
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308395559.mol2 23
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:41:19
Heat of formation + Delta-G solvation = -65.775001 kcal
Electronic energy + Delta-G solvation = -13562.322740 eV
Core-core repulsion = 10765.939650 eV
Total energy + Delta-G solvation = -2796.383089 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 213.052 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-46.06433 -41.10357 -39.94869 -37.55784 -34.46684 -34.32118 -32.97475 -28.66083
-27.95350 -25.34203 -24.36277 -22.24510 -20.29571 -19.95408 -19.06516 -17.91104
-17.66082 -16.78718 -16.78213 -16.36930 -16.26030 -15.78374 -14.82384 -14.60300
-13.67252 -13.32194 -13.16799 -12.91615 -12.61521 -12.46441 -12.16117 -12.11346
-11.53718 -11.03460 -10.76566 -10.51109 -8.63335 -6.41138 -0.48485 0.91742
1.30410 1.43372 1.47387 1.52892 1.61132 1.80808 2.17115 2.66624
2.93713 3.06246 3.62099 3.98768 4.25955 4.31189 4.42185 4.61911
4.64643 5.07574 5.66755 5.79934 6.33523 6.76603 6.84514 7.51493
8.55817
Molecular weight = 213.05amu
Principal moments of inertia in cm(-1)
A = 0.085313 B = 0.006650 C = 0.006190
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 328.126315 B = 4209.592563 C = 4522.562302
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.022 3.978
2 O -0.283 6.283
3 C 0.214 3.786
4 C -0.153 4.153
5 C -0.016 4.016
6 C 0.467 3.533
7 O -0.543 6.543
8 O -0.216 6.216
9 C -0.419 4.419
10 H 0.099 0.901
11 C 0.000 4.000
12 N -0.887 5.887
13 Si 1.027 2.973
14 H -0.257 1.257
15 H -0.261 1.261
16 H -0.257 1.257
17 O 0.103 5.897
18 N -0.403 5.403
19 H 0.060 0.940
20 H 0.060 0.940
21 H 0.144 0.856
22 H 0.212 0.788
23 H 0.285 0.715
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.063 -9.740 0.028 10.977
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 O -0.189 6.189
3 C 0.017 3.983
4 C -0.175 4.175
5 C -0.079 4.079
6 C 0.315 3.685
7 O -0.441 6.441
8 O -0.122 6.122
9 C -0.494 4.494
10 H 0.117 0.883
11 C -0.203 4.203
12 N -0.523 5.523
13 Si 0.845 3.155
14 H -0.181 1.181
15 H -0.184 1.184
16 H -0.181 1.181
17 O 0.041 5.959
18 N -0.131 5.131
19 H 0.079 0.921
20 H 0.078 0.922
21 H 0.162 0.838
22 H 0.229 0.771
23 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -6.052 -9.536 0.034 11.295
hybrid contribution 0.817 0.106 -0.005 0.824
sum -5.235 -9.430 0.029 10.786
Atomic orbital electron populations
1.23439 0.74699 1.06532 1.02547 1.86227 1.24643 1.18905 1.89136
1.21837 0.90432 0.86229 0.99851 1.22297 0.95272 0.93465 1.06453
1.22784 0.85107 0.93016 1.07035 1.19211 0.85912 0.82585 0.80836
1.90698 1.28180 1.72641 1.52580 1.83953 1.37104 1.16965 1.74163
1.21737 0.83453 0.89540 1.54668 0.88338 1.26796 1.03980 0.95627
0.93886 1.70061 1.28618 1.09748 1.43843 0.84549 0.74127 0.76671
0.80192 1.18111 1.18440 1.18120 1.85073 1.11936 1.29847 1.69082
1.73975 1.16253 0.96940 1.25916 0.92148 0.92155 0.83836 0.77078
0.90521
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.39 10.73 113.37 1.22 1.61 14
2 O -0.28 -7.40 10.57 -90.47 -0.96 -8.36 14
3 C 0.21 6.93 7.99 85.76 0.69 7.61 14
4 C -0.15 -5.21 10.97 22.82 0.25 -4.96 14
5 C -0.02 -0.65 7.36 24.32 0.18 -0.48 14
6 C 0.47 23.87 7.89 70.20 0.55 24.42 14
7 O -0.54 -28.71 16.16 19.68 0.32 -28.39 14
8 O -0.22 -12.66 9.75 12.47 0.12 -12.54 14
9 C -0.42 -24.46 9.65 67.97 0.66 -23.80 14
10 H 0.10 5.65 6.86 -2.91 -0.02 5.63 14
11 C 0.00 0.00 5.50 84.92 0.47 0.47 14
12 N -0.89 -50.98 13.67 21.65 0.30 -50.68 14
13 Si 1.03 40.94 29.55 68.60 2.03 42.97 14
14 H -0.26 -9.77 7.11 99.48 0.71 -9.07 14
15 H -0.26 -9.61 7.11 99.48 0.71 -8.90 14
16 H -0.26 -9.78 7.11 99.48 0.71 -9.07 14
17 O 0.10 4.32 11.22 65.26 0.73 5.06 14
18 N -0.40 -14.70 11.50 -171.95 -1.98 -16.68 14
19 H 0.06 1.11 8.14 -2.39 -0.02 1.09 14
20 H 0.06 1.11 8.14 -2.39 -0.02 1.09 14
21 H 0.14 1.46 8.14 -2.39 -0.02 1.44 14
22 H 0.21 5.98 8.06 -2.91 -0.02 5.96 14
23 H 0.29 14.74 8.31 -92.71 -0.77 13.97 14
Total: -1.00 -67.42 231.48 5.82 -61.61
By element:
Atomic # 1 Polarization: 0.89 SS G_CDS: 1.25 Total: 2.14 kcal
Atomic # 6 Polarization: 0.87 SS G_CDS: 4.01 Total: 4.87 kcal
Atomic # 7 Polarization: -65.68 SS G_CDS: -1.68 Total: -67.36 kcal
Atomic # 8 Polarization: -44.45 SS G_CDS: 0.22 Total: -44.23 kcal
Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal
Total: -67.42 5.82 -61.61 kcal
The number of atoms in the molecule is 23
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308395559.mol2 23
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.169 kcal
(2) G-P(sol) polarization free energy of solvation -67.424 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.593 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.818 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.606 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.775 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds