Wall clock time and date at job start Sun Mar 29 2020 21:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35725 * 117.00137 * 2 1 4 4 C 1.41797 * 126.77441 * 179.97438 * 3 2 1 5 5 C 1.36829 * 103.80175 * 179.71633 * 4 3 2 6 6 C 1.47284 * 126.89845 * 180.26179 * 5 4 3 7 7 O 1.21548 * 119.99615 * 359.97438 * 6 5 4 8 8 O 1.34766 * 120.00240 * 180.02562 * 6 5 4 9 9 C 1.34782 * 117.00258 * 179.97438 * 8 6 5 10 10 H 1.08006 * 120.00131 * 0.02562 * 9 8 6 11 11 C 1.38883 * 120.00466 * 179.97438 * 9 8 6 12 12 N 1.31374 * 119.99696 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00238 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46807 * 60.00589 * 13 11 9 15 15 H 1.48501 * 109.46880 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47129 * 300.00097 * 13 11 9 17 17 O 1.34700 * 106.20610 * 0.26097 * 5 4 3 18 18 N 1.20876 * 111.62349 * 0.02562 * 17 5 4 19 19 H 1.08997 * 109.47167 * 299.99822 * 1 2 3 20 20 H 1.09003 * 109.47504 * 59.99912 * 1 2 3 21 21 H 1.09001 * 109.46964 * 179.97438 * 1 2 3 22 22 H 1.08002 * 128.10333 * 359.97438 * 4 3 2 23 23 H 0.96997 * 119.99939 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4426 1.4500 0.0005 5 6 3.5387 2.8149 -0.0063 6 6 4.7758 3.6142 -0.0142 7 8 5.8575 3.0599 -0.0147 8 8 4.7084 4.9602 -0.0199 9 6 5.8771 5.6314 -0.0265 10 1 6.8113 5.0893 -0.0274 11 6 5.8804 7.0202 -0.0331 12 7 4.7442 7.6797 -0.0324 13 14 7.5003 7.9504 -0.0429 14 1 8.2740 7.5842 -1.2563 15 1 7.2323 9.4110 -0.0483 16 1 8.2822 7.5956 1.1687 17 8 2.2749 3.2808 -0.0044 18 7 1.4683 2.3805 0.0031 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 4.2436 0.7256 0.0014 23 1 4.7465 8.6497 -0.0374 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308395559.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:19 Heat of formation + Delta-G solvation = -65.775001 kcal Electronic energy + Delta-G solvation = -13562.322740 eV Core-core repulsion = 10765.939650 eV Total energy + Delta-G solvation = -2796.383089 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.052 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -46.06433 -41.10357 -39.94869 -37.55784 -34.46684 -34.32118 -32.97475 -28.66083 -27.95350 -25.34203 -24.36277 -22.24510 -20.29571 -19.95408 -19.06516 -17.91104 -17.66082 -16.78718 -16.78213 -16.36930 -16.26030 -15.78374 -14.82384 -14.60300 -13.67252 -13.32194 -13.16799 -12.91615 -12.61521 -12.46441 -12.16117 -12.11346 -11.53718 -11.03460 -10.76566 -10.51109 -8.63335 -6.41138 -0.48485 0.91742 1.30410 1.43372 1.47387 1.52892 1.61132 1.80808 2.17115 2.66624 2.93713 3.06246 3.62099 3.98768 4.25955 4.31189 4.42185 4.61911 4.64643 5.07574 5.66755 5.79934 6.33523 6.76603 6.84514 7.51493 8.55817 Molecular weight = 213.05amu Principal moments of inertia in cm(-1) A = 0.085313 B = 0.006650 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 328.126315 B = 4209.592563 C = 4522.562302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.283 6.283 3 C 0.214 3.786 4 C -0.153 4.153 5 C -0.016 4.016 6 C 0.467 3.533 7 O -0.543 6.543 8 O -0.216 6.216 9 C -0.419 4.419 10 H 0.099 0.901 11 C 0.000 4.000 12 N -0.887 5.887 13 Si 1.027 2.973 14 H -0.257 1.257 15 H -0.261 1.261 16 H -0.257 1.257 17 O 0.103 5.897 18 N -0.403 5.403 19 H 0.060 0.940 20 H 0.060 0.940 21 H 0.144 0.856 22 H 0.212 0.788 23 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.063 -9.740 0.028 10.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.189 6.189 3 C 0.017 3.983 4 C -0.175 4.175 5 C -0.079 4.079 6 C 0.315 3.685 7 O -0.441 6.441 8 O -0.122 6.122 9 C -0.494 4.494 10 H 0.117 0.883 11 C -0.203 4.203 12 N -0.523 5.523 13 Si 0.845 3.155 14 H -0.181 1.181 15 H -0.184 1.184 16 H -0.181 1.181 17 O 0.041 5.959 18 N -0.131 5.131 19 H 0.079 0.921 20 H 0.078 0.922 21 H 0.162 0.838 22 H 0.229 0.771 23 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.052 -9.536 0.034 11.295 hybrid contribution 0.817 0.106 -0.005 0.824 sum -5.235 -9.430 0.029 10.786 Atomic orbital electron populations 1.23439 0.74699 1.06532 1.02547 1.86227 1.24643 1.18905 1.89136 1.21837 0.90432 0.86229 0.99851 1.22297 0.95272 0.93465 1.06453 1.22784 0.85107 0.93016 1.07035 1.19211 0.85912 0.82585 0.80836 1.90698 1.28180 1.72641 1.52580 1.83953 1.37104 1.16965 1.74163 1.21737 0.83453 0.89540 1.54668 0.88338 1.26796 1.03980 0.95627 0.93886 1.70061 1.28618 1.09748 1.43843 0.84549 0.74127 0.76671 0.80192 1.18111 1.18440 1.18120 1.85073 1.11936 1.29847 1.69082 1.73975 1.16253 0.96940 1.25916 0.92148 0.92155 0.83836 0.77078 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.73 113.37 1.22 1.61 14 2 O -0.28 -7.40 10.57 -90.47 -0.96 -8.36 14 3 C 0.21 6.93 7.99 85.76 0.69 7.61 14 4 C -0.15 -5.21 10.97 22.82 0.25 -4.96 14 5 C -0.02 -0.65 7.36 24.32 0.18 -0.48 14 6 C 0.47 23.87 7.89 70.20 0.55 24.42 14 7 O -0.54 -28.71 16.16 19.68 0.32 -28.39 14 8 O -0.22 -12.66 9.75 12.47 0.12 -12.54 14 9 C -0.42 -24.46 9.65 67.97 0.66 -23.80 14 10 H 0.10 5.65 6.86 -2.91 -0.02 5.63 14 11 C 0.00 0.00 5.50 84.92 0.47 0.47 14 12 N -0.89 -50.98 13.67 21.65 0.30 -50.68 14 13 Si 1.03 40.94 29.55 68.60 2.03 42.97 14 14 H -0.26 -9.77 7.11 99.48 0.71 -9.07 14 15 H -0.26 -9.61 7.11 99.48 0.71 -8.90 14 16 H -0.26 -9.78 7.11 99.48 0.71 -9.07 14 17 O 0.10 4.32 11.22 65.26 0.73 5.06 14 18 N -0.40 -14.70 11.50 -171.95 -1.98 -16.68 14 19 H 0.06 1.11 8.14 -2.39 -0.02 1.09 14 20 H 0.06 1.11 8.14 -2.39 -0.02 1.09 14 21 H 0.14 1.46 8.14 -2.39 -0.02 1.44 14 22 H 0.21 5.98 8.06 -2.91 -0.02 5.96 14 23 H 0.29 14.74 8.31 -92.71 -0.77 13.97 14 Total: -1.00 -67.42 231.48 5.82 -61.61 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: 1.25 Total: 2.14 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 4.01 Total: 4.87 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -1.68 Total: -67.36 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: 0.22 Total: -44.23 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -67.42 5.82 -61.61 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308395559.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.169 kcal (2) G-P(sol) polarization free energy of solvation -67.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds