Wall clock time and date at job start Sun Mar 29 2020 21:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86795 * 120.00078 * 2 1 4 4 H 1.48507 * 109.46989 * 274.97749 * 3 2 1 5 5 H 1.48498 * 109.47422 * 34.97784 * 3 2 1 6 6 H 1.48504 * 109.47361 * 154.98300 * 3 2 1 7 7 C 1.40047 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99578 * 186.14920 * 7 2 1 9 9 C 1.46371 * 120.00156 * 6.15825 * 7 2 1 10 10 O 1.21684 * 119.99993 * 353.93386 * 9 7 2 11 11 N 1.34779 * 120.00015 * 173.93430 * 9 7 2 12 12 C 1.46501 * 119.99936 * 180.02562 * 11 9 7 13 13 H 1.08996 * 109.47298 * 324.99523 * 12 11 9 14 14 C 1.52993 * 109.47223 * 85.00312 * 12 11 9 15 15 O 1.42893 * 109.47491 * 64.99717 * 14 12 11 16 16 C 1.53002 * 109.46788 * 205.00046 * 12 11 9 17 17 C 1.53003 * 109.47264 * 64.99809 * 16 12 11 18 18 C 1.52993 * 117.50247 * 243.62241 * 17 16 12 19 19 C 1.53000 * 60.00258 * 252.51088 * 18 17 16 20 20 H 0.97003 * 119.99493 * 0.02562 * 1 2 3 21 21 H 0.97006 * 119.99895 * 359.97438 * 11 9 7 22 22 H 1.08998 * 109.46804 * 304.99607 * 14 12 11 23 23 H 1.09005 * 109.47081 * 185.00033 * 14 12 11 24 24 H 0.96703 * 114.00174 * 180.02562 * 15 14 12 25 25 H 1.08996 * 109.47119 * 184.99892 * 16 12 11 26 26 H 1.08998 * 109.47299 * 305.00008 * 16 12 11 27 27 H 1.09006 * 115.54952 * 29.32759 * 17 16 12 28 28 H 1.09011 * 117.49933 * 359.97438 * 18 17 16 29 29 H 1.09005 * 117.50524 * 145.01878 * 18 17 16 30 30 H 1.09003 * 117.49369 * 252.51182 * 19 18 17 31 31 H 1.08994 * 117.50281 * 107.48987 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3831 2.1071 -1.3949 5 1 1.4948 2.6200 0.8026 6 1 3.5870 1.4120 0.5921 7 6 2.0069 -1.2129 0.0005 8 1 3.0823 -1.2155 0.1007 9 6 1.2813 -2.4769 -0.1349 10 8 0.0645 -2.4827 -0.1369 11 7 1.9610 -3.6343 -0.2573 12 6 1.2347 -4.8993 -0.3934 13 1 0.3227 -4.8606 0.2021 14 6 0.8750 -5.1253 -1.8632 15 8 2.0715 -5.2923 -2.6263 16 6 2.1165 -6.0489 0.0984 17 6 2.3735 -5.8890 1.5982 18 6 3.8180 -5.6592 2.0468 19 6 3.1416 -7.0068 2.3064 20 1 -0.4849 0.8401 -0.0004 21 1 2.9310 -3.6296 -0.2561 22 1 0.3220 -4.2642 -2.2384 23 1 0.2588 -6.0200 -1.9530 24 1 1.9190 -5.4398 -3.5697 25 1 1.6120 -6.9977 -0.0847 26 1 3.0660 -6.0332 -0.4366 27 1 1.5858 -5.3859 2.1591 28 1 4.5854 -5.6223 1.2735 29 1 3.9810 -5.0046 2.9031 30 1 2.8595 -7.2387 3.3335 31 1 3.4638 -7.8560 1.7040 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308397681.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:06 Heat of formation + Delta-G solvation = -104.340386 kcal Electronic energy + Delta-G solvation = -14419.084694 eV Core-core repulsion = 11892.695473 eV Total energy + Delta-G solvation = -2526.389221 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.02131 -38.31193 -37.50536 -35.10819 -34.38704 -31.39516 -28.20681 -27.45627 -23.26792 -22.92216 -21.48332 -21.10052 -19.17671 -18.29186 -17.37001 -17.01651 -15.95973 -15.84144 -15.60872 -15.20920 -14.51847 -14.19453 -13.93706 -13.82578 -13.08096 -12.92245 -12.73373 -12.56830 -12.32166 -12.13190 -12.03936 -11.93637 -11.12035 -10.91838 -10.84212 -10.73163 -9.79718 -9.35370 -8.28015 -6.81935 1.39071 1.40300 1.55955 2.25215 2.49637 2.96350 3.17330 3.48538 3.64317 3.73065 4.02219 4.14687 4.26414 4.41093 4.50051 4.61564 4.67970 4.82166 4.96638 5.02453 5.14568 5.18328 5.31716 5.33771 5.46308 5.93170 6.27710 6.38917 6.89213 6.92659 7.62036 8.53274 8.70796 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.030531 B = 0.008754 C = 0.007653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.891767 B = 3197.614386 C = 3658.025687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.995 3.005 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.575 4.575 8 H 0.081 0.919 9 C 0.543 3.457 10 O -0.634 6.634 11 N -0.735 5.735 12 C 0.153 3.847 13 H 0.056 0.944 14 C 0.074 3.926 15 O -0.573 6.573 16 C -0.070 4.070 17 C -0.166 4.166 18 C -0.182 4.182 19 C -0.161 4.161 20 H 0.273 0.727 21 H 0.390 0.610 22 H 0.011 0.989 23 H 0.072 0.928 24 H 0.390 0.610 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.240 -10.728 -0.634 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.185 4.185 3 Si 0.815 3.185 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.173 1.173 7 C -0.612 4.612 8 H 0.100 0.900 9 C 0.346 3.654 10 O -0.522 6.522 11 N -0.388 5.388 12 C 0.047 3.953 13 H 0.075 0.925 14 C -0.005 4.005 15 O -0.380 6.380 16 C -0.107 4.107 17 C -0.184 4.184 18 C -0.219 4.219 19 C -0.198 4.198 20 H 0.083 0.917 21 H 0.223 0.777 22 H 0.030 0.970 23 H 0.090 0.910 24 H 0.238 0.762 25 H 0.108 0.892 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.469 -10.593 -0.038 12.412 hybrid contribution -0.042 0.877 -0.530 1.025 sum 6.427 -9.717 -0.569 11.664 Atomic orbital electron populations 1.70195 1.09427 1.28761 1.36807 1.26933 0.95505 1.04817 0.91274 0.85050 0.78945 0.75398 0.79152 1.18827 1.19639 1.17323 1.21418 0.95003 0.90635 1.54162 0.90040 1.18505 0.86709 0.84299 0.75854 1.90531 1.16086 1.87569 1.58004 1.45682 1.08847 1.05023 1.79234 1.20780 0.95865 0.85323 0.93316 0.92544 1.22508 0.86759 0.98634 0.92609 1.86414 1.31664 1.95486 1.24475 1.21193 1.00247 0.96750 0.92539 1.22195 0.95538 1.04533 0.96138 1.23039 0.95167 1.00202 1.03528 1.23033 1.02934 0.92147 1.01657 0.91682 0.77678 0.97040 0.90966 0.76157 0.89174 0.90543 0.90626 0.88215 0.89544 0.88246 0.87260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.27 11.85 21.84 0.26 -51.01 16 2 C 0.03 1.69 5.49 85.30 0.47 2.15 16 3 Si 1.00 42.08 29.56 68.60 2.03 44.11 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 7 C -0.58 -33.66 9.53 24.83 0.24 -33.43 16 8 H 0.08 4.35 7.86 -2.91 -0.02 4.33 16 9 C 0.54 32.17 7.71 86.36 0.67 32.84 16 10 O -0.63 -42.91 14.71 -4.30 -0.06 -42.97 16 11 N -0.74 -34.25 4.74 -446.84 -2.12 -36.37 16 12 C 0.15 6.02 2.33 44.99 0.10 6.12 16 13 H 0.06 2.54 7.58 -2.39 -0.02 2.53 16 14 C 0.07 2.63 6.85 71.98 0.49 3.12 16 15 O -0.57 -17.74 12.83 -148.98 -1.91 -19.65 16 16 C -0.07 -2.06 4.75 30.60 0.15 -1.91 16 17 C -0.17 -4.89 5.47 -10.79 -0.06 -4.95 16 18 C -0.18 -4.78 10.18 30.59 0.31 -4.47 16 19 C -0.16 -3.59 10.25 30.60 0.31 -3.28 16 20 H 0.27 15.41 8.29 -92.71 -0.77 14.64 16 21 H 0.39 16.70 8.58 -92.70 -0.80 15.90 16 22 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 23 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 24 H 0.39 8.22 9.12 -74.05 -0.68 7.55 16 25 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.08 2.22 7.46 -2.39 -0.02 2.20 16 27 H 0.08 2.66 8.08 -2.38 -0.02 2.64 16 28 H 0.10 2.45 8.03 -2.38 -0.02 2.43 16 29 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 30 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -76.44 271.42 0.54 -75.89 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: -0.33 Total: 33.81 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 2.68 Total: -3.81 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -1.86 Total: -87.39 kcal Atomic # 8 Polarization: -60.65 SS G_CDS: -1.97 Total: -62.62 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -76.44 0.54 -75.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308397681.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.445 kcal (2) G-P(sol) polarization free energy of solvation -76.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds