Wall clock time and date at job start Sun Mar 29 2020 21:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86803 * 119.99820 * 2 1 4 4 H 1.48499 * 109.47095 * 239.99796 * 3 2 1 5 5 H 1.48505 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46834 * 119.99540 * 3 2 1 7 7 C 1.40048 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00002 * 180.02562 * 7 2 1 9 9 C 1.46380 * 119.99651 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00457 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99749 * 180.02562 * 9 7 2 12 12 C 1.46500 * 120.00050 * 180.02562 * 11 9 7 13 13 H 1.08993 * 109.47452 * 35.00094 * 12 11 9 14 14 C 1.52997 * 109.47007 * 274.99876 * 12 11 9 15 15 O 1.42901 * 109.47149 * 294.99944 * 14 12 11 16 16 C 1.53006 * 109.46998 * 155.00016 * 12 11 9 17 17 C 1.52996 * 109.47102 * 295.00080 * 16 12 11 18 18 C 1.53008 * 117.49719 * 243.74973 * 17 16 12 19 19 C 1.53001 * 117.49877 * 175.08962 * 17 16 12 20 20 H 0.96997 * 119.99709 * 0.02562 * 1 2 3 21 21 H 0.97002 * 119.99920 * 0.02562 * 11 9 7 22 22 H 1.09000 * 109.47325 * 54.99943 * 14 12 11 23 23 H 1.08998 * 109.46934 * 174.99981 * 14 12 11 24 24 H 0.96706 * 113.99893 * 180.02562 * 15 14 12 25 25 H 1.09000 * 109.47314 * 55.00214 * 16 12 11 26 26 H 1.09007 * 109.46744 * 174.99835 * 16 12 11 27 27 H 1.08998 * 115.54858 * 29.41453 * 17 16 12 28 28 H 1.08998 * 117.49707 * 0.02562 * 18 17 16 29 29 H 1.08995 * 117.49646 * 145.01762 * 18 17 16 30 30 H 1.08996 * 117.50091 * 214.97581 * 19 17 16 31 31 H 1.08999 * 117.49722 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6965 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6965 1.2126 7 6 2.0071 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4806 -0.0005 11 7 1.9490 -3.6476 -0.0005 12 6 1.2165 -4.9164 -0.0011 13 1 0.3061 -4.8101 -0.5908 14 6 0.8522 -5.2955 1.4357 15 8 2.0461 -5.5486 2.1789 16 6 2.0941 -6.0116 -0.6107 17 6 2.3554 -5.6944 -2.0844 18 6 1.8082 -6.6731 -3.1255 19 6 3.3121 -6.6140 -2.8460 20 1 -0.4849 0.8400 -0.0004 21 1 2.9190 -3.6476 -0.0002 22 1 0.3023 -4.4765 1.8993 23 1 0.2317 -6.1916 1.4287 24 1 1.8906 -5.7956 3.1009 25 1 3.0423 -6.0575 -0.0752 26 1 1.5846 -6.9720 -0.5304 27 1 2.3619 -4.6357 -2.3434 28 1 1.2616 -7.5426 -2.7604 29 1 1.4551 -6.2582 -4.0695 30 1 3.9477 -6.1603 -3.6064 31 1 3.7556 -7.4447 -2.2970 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308397685.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:08 Heat of formation + Delta-G solvation = -77.270884 kcal Electronic energy + Delta-G solvation = -14356.221057 eV Core-core repulsion = 11831.005658 eV Total energy + Delta-G solvation = -2525.215399 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.37398 -36.76038 -36.03507 -33.35429 -32.26541 -29.60437 -26.38669 -25.83078 -22.20134 -21.26969 -20.18770 -19.18942 -17.33976 -16.77159 -15.45305 -15.23314 -14.74900 -14.32348 -13.94728 -13.59844 -13.18550 -12.36558 -12.20419 -12.04386 -11.44880 -11.32828 -11.08510 -10.97143 -10.88290 -10.60227 -10.38783 -10.18955 -9.90215 -9.68146 -9.38828 -8.80581 -7.55839 -7.40052 -6.13887 -4.58541 3.18588 3.23097 3.25281 4.04124 4.14676 4.61215 4.76421 4.87203 5.00676 5.15576 5.22036 5.57776 5.71678 5.77968 5.81822 5.89831 6.00150 6.03733 6.14643 6.24534 6.28493 6.56737 6.64785 6.76469 7.48105 8.01859 8.02880 8.21426 8.41284 9.07496 9.63387 10.65298 10.84779 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.030980 B = 0.008373 C = 0.007420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.580817 B = 3343.298462 C = 3772.432917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.556 3.444 10 O -0.585 6.585 11 N -0.752 5.752 12 C 0.162 3.838 13 H 0.087 0.913 14 C 0.064 3.936 15 O -0.568 6.568 16 C -0.087 4.087 17 C -0.143 4.143 18 C -0.185 4.185 19 C -0.186 4.186 20 H 0.267 0.733 21 H 0.382 0.618 22 H 0.053 0.947 23 H 0.035 0.965 24 H 0.367 0.633 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.112 0.888 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.629 -10.284 -0.846 11.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.360 3.640 10 O -0.469 6.469 11 N -0.406 5.406 12 C 0.055 3.945 13 H 0.105 0.895 14 C -0.015 4.015 15 O -0.372 6.372 16 C -0.124 4.124 17 C -0.162 4.162 18 C -0.222 4.222 19 C -0.223 4.223 20 H 0.078 0.922 21 H 0.214 0.786 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.212 0.788 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.130 0.870 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.812 -10.022 -1.441 10.819 hybrid contribution 0.584 0.654 0.548 1.034 sum 4.396 -9.368 -0.893 10.387 Atomic orbital electron populations 1.70016 1.07007 1.27207 1.35655 1.25697 0.94595 1.00204 0.92657 0.86465 0.79832 0.81175 0.79427 1.19328 1.20623 1.19327 1.20868 0.93563 0.89515 1.54262 0.91567 1.18190 0.87157 0.82556 0.76078 1.90582 1.14108 1.86948 1.55239 1.46056 1.08584 1.04192 1.81745 1.20542 0.96466 0.85296 0.92235 0.89536 1.22790 0.86291 0.98157 0.94291 1.86485 1.32619 1.92041 1.26032 1.21324 1.00742 0.97740 0.92643 1.22433 1.03041 0.97543 0.93135 1.23006 0.96268 1.02035 1.00890 1.22931 0.92623 1.02921 1.03811 0.92179 0.78638 0.92862 0.94659 0.78791 0.90765 0.91932 0.86990 0.89198 0.89230 0.89232 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.32 11.83 55.55 0.66 -22.66 16 2 C 0.09 2.49 5.50 -17.36 -0.10 2.39 16 3 Si 0.91 20.48 29.56 -169.99 -5.02 15.45 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.54 -15.65 9.54 -35.63 -0.34 -15.98 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.56 15.90 7.71 -12.99 -0.10 15.80 16 10 O -0.59 -18.85 14.68 5.20 0.08 -18.77 16 11 N -0.75 -17.14 4.45 -55.22 -0.25 -17.38 16 12 C 0.16 3.15 2.35 -67.93 -0.16 2.99 16 13 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 14 C 0.06 1.15 6.85 37.16 0.25 1.40 16 15 O -0.57 -9.31 12.83 -35.23 -0.45 -9.76 16 16 C -0.09 -1.36 4.75 -26.73 -0.13 -1.49 16 17 C -0.14 -2.20 5.61 -90.62 -0.51 -2.71 16 18 C -0.18 -2.44 10.18 -26.69 -0.27 -2.71 16 19 C -0.19 -2.37 10.25 -26.69 -0.27 -2.64 16 20 H 0.27 7.37 8.29 -40.82 -0.34 7.04 16 21 H 0.38 8.10 8.58 -40.82 -0.35 7.75 16 22 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 23 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.37 4.28 9.12 45.56 0.42 4.70 16 25 H 0.07 1.18 7.73 -51.93 -0.40 0.78 16 26 H 0.06 0.88 7.88 -51.93 -0.41 0.47 16 27 H 0.11 2.00 7.69 -51.93 -0.40 1.61 16 28 H 0.09 1.08 8.03 -51.93 -0.42 0.67 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 270.87 15.07 4.08 4.08 Total: -1.00 -34.02 270.87 -6.14 -40.16 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -3.61 Total: 11.82 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -1.62 Total: -2.94 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.41 Total: -40.04 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.38 Total: -28.53 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -34.02 -6.14 -40.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308397685.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.109 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds