Wall clock time and date at job start Sun Mar 29 2020 21:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86803 * 119.99820 * 2 1 4 4 H 1.48499 * 109.47095 * 239.99796 * 3 2 1 5 5 H 1.48505 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46834 * 119.99540 * 3 2 1 7 7 C 1.40048 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00002 * 180.02562 * 7 2 1 9 9 C 1.46380 * 119.99651 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00457 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99749 * 180.02562 * 9 7 2 12 12 C 1.46500 * 120.00050 * 180.02562 * 11 9 7 13 13 H 1.08993 * 109.47452 * 35.00094 * 12 11 9 14 14 C 1.52997 * 109.47007 * 274.99876 * 12 11 9 15 15 O 1.42901 * 109.47149 * 294.99944 * 14 12 11 16 16 C 1.53006 * 109.46998 * 155.00016 * 12 11 9 17 17 C 1.52996 * 109.47102 * 295.00080 * 16 12 11 18 18 C 1.53008 * 117.49719 * 243.74973 * 17 16 12 19 19 C 1.53001 * 117.49877 * 175.08962 * 17 16 12 20 20 H 0.96997 * 119.99709 * 0.02562 * 1 2 3 21 21 H 0.97002 * 119.99920 * 0.02562 * 11 9 7 22 22 H 1.09000 * 109.47325 * 54.99943 * 14 12 11 23 23 H 1.08998 * 109.46934 * 174.99981 * 14 12 11 24 24 H 0.96706 * 113.99893 * 180.02562 * 15 14 12 25 25 H 1.09000 * 109.47314 * 55.00214 * 16 12 11 26 26 H 1.09007 * 109.46744 * 174.99835 * 16 12 11 27 27 H 1.08998 * 115.54858 * 29.41453 * 17 16 12 28 28 H 1.08998 * 117.49707 * 0.02562 * 18 17 16 29 29 H 1.08995 * 117.49646 * 145.01762 * 18 17 16 30 30 H 1.08996 * 117.50091 * 214.97581 * 19 17 16 31 31 H 1.08999 * 117.49722 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6965 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6965 1.2126 7 6 2.0071 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4806 -0.0005 11 7 1.9490 -3.6476 -0.0005 12 6 1.2165 -4.9164 -0.0011 13 1 0.3061 -4.8101 -0.5908 14 6 0.8522 -5.2955 1.4357 15 8 2.0461 -5.5486 2.1789 16 6 2.0941 -6.0116 -0.6107 17 6 2.3554 -5.6944 -2.0844 18 6 1.8082 -6.6731 -3.1255 19 6 3.3121 -6.6140 -2.8460 20 1 -0.4849 0.8400 -0.0004 21 1 2.9190 -3.6476 -0.0002 22 1 0.3023 -4.4765 1.8993 23 1 0.2317 -6.1916 1.4287 24 1 1.8906 -5.7956 3.1009 25 1 3.0423 -6.0575 -0.0752 26 1 1.5846 -6.9720 -0.5304 27 1 2.3619 -4.6357 -2.3434 28 1 1.2616 -7.5426 -2.7604 29 1 1.4551 -6.2582 -4.0695 30 1 3.9477 -6.1603 -3.6064 31 1 3.7556 -7.4447 -2.2970 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308397685.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:08 Heat of formation + Delta-G solvation = -104.041896 kcal Electronic energy + Delta-G solvation = -14357.381935 eV Core-core repulsion = 11831.005658 eV Total energy + Delta-G solvation = -2526.376277 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.02956 -38.32387 -37.51239 -35.13767 -34.40023 -31.36257 -28.19862 -27.49887 -23.23634 -22.98833 -21.57242 -20.94893 -19.24874 -18.30872 -17.39683 -16.80959 -16.23215 -15.79579 -15.67019 -15.13143 -14.51177 -14.26358 -14.15002 -13.57732 -12.95351 -12.89194 -12.69381 -12.60227 -12.35689 -12.25627 -12.08367 -11.95969 -11.10328 -10.95256 -10.90748 -10.64309 -9.81496 -9.37604 -8.27533 -6.83480 1.38807 1.42537 1.53792 2.24961 2.49056 2.94575 3.15375 3.48760 3.64237 3.73611 4.00946 4.12260 4.27896 4.40807 4.50630 4.56025 4.71391 4.79966 4.88284 5.01722 5.17399 5.24294 5.31109 5.32525 5.44812 5.91732 6.26233 6.37172 6.88234 6.92548 7.60300 8.52536 8.70068 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.030980 B = 0.008373 C = 0.007420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.580817 B = 3343.298462 C = 3772.432917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.996 3.004 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.542 3.458 10 O -0.633 6.633 11 N -0.739 5.739 12 C 0.154 3.846 13 H 0.057 0.943 14 C 0.074 3.926 15 O -0.573 6.573 16 C -0.068 4.068 17 C -0.174 4.174 18 C -0.180 4.180 19 C -0.164 4.164 20 H 0.274 0.726 21 H 0.391 0.609 22 H 0.012 0.988 23 H 0.072 0.928 24 H 0.390 0.610 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.457 -11.112 -0.878 12.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.613 4.613 8 H 0.100 0.900 9 C 0.346 3.654 10 O -0.520 6.520 11 N -0.392 5.392 12 C 0.048 3.952 13 H 0.075 0.925 14 C -0.005 4.005 15 O -0.380 6.380 16 C -0.106 4.106 17 C -0.192 4.192 18 C -0.216 4.216 19 C -0.201 4.201 20 H 0.084 0.916 21 H 0.224 0.776 22 H 0.030 0.970 23 H 0.090 0.910 24 H 0.239 0.761 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.125 0.875 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.680 -10.908 -1.456 12.385 hybrid contribution 0.014 0.815 0.566 0.993 sum 5.694 -10.093 -0.890 11.623 Atomic orbital electron populations 1.70182 1.09410 1.28862 1.36712 1.26941 0.95536 1.04829 0.91256 0.85111 0.78257 0.74938 0.80212 1.17927 1.19753 1.17963 1.21408 0.94564 0.90450 1.54902 0.89986 1.18507 0.86788 0.84336 0.75788 1.90533 1.16044 1.87999 1.57445 1.45740 1.08896 1.04264 1.80253 1.20740 0.95879 0.85018 0.93580 0.92534 1.22504 0.86818 0.98246 0.92920 1.86419 1.31743 1.92032 1.27843 1.21169 1.00020 0.96942 0.92420 1.22274 1.06840 0.96434 0.93657 1.23118 0.97125 1.01461 0.99940 1.23020 0.92376 1.01934 1.02771 0.91647 0.77645 0.96999 0.90983 0.76145 0.90492 0.89377 0.90496 0.87520 0.89270 0.88555 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.28 11.83 21.84 0.26 -51.03 16 2 C 0.03 1.67 5.50 85.30 0.47 2.14 16 3 Si 1.00 42.03 29.56 68.60 2.03 44.06 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 7 C -0.58 -33.75 9.54 24.83 0.24 -33.51 16 8 H 0.08 4.36 7.85 -2.91 -0.02 4.34 16 9 C 0.54 32.20 7.71 86.36 0.67 32.86 16 10 O -0.63 -42.86 14.68 -4.29 -0.06 -42.92 16 11 N -0.74 -34.57 4.45 -446.83 -1.99 -36.56 16 12 C 0.15 6.07 2.35 44.99 0.11 6.18 16 13 H 0.06 2.57 7.58 -2.39 -0.02 2.55 16 14 C 0.07 2.64 6.85 71.98 0.49 3.14 16 15 O -0.57 -17.79 12.83 -148.98 -1.91 -19.70 16 16 C -0.07 -2.02 4.75 30.60 0.15 -1.88 16 17 C -0.17 -5.19 5.61 -10.79 -0.06 -5.25 16 18 C -0.18 -4.38 10.18 30.62 0.31 -4.07 16 19 C -0.16 -3.74 10.25 30.62 0.31 -3.43 16 20 H 0.27 15.48 8.29 -92.71 -0.77 14.71 16 21 H 0.39 16.74 8.58 -92.71 -0.80 15.95 16 22 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 23 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.39 8.24 9.12 -74.05 -0.68 7.56 16 25 H 0.08 2.26 7.73 -2.39 -0.02 2.25 16 26 H 0.09 2.20 7.88 -2.38 -0.02 2.18 16 27 H 0.08 2.84 7.69 -2.39 -0.02 2.82 16 28 H 0.11 2.24 8.03 -2.39 -0.02 2.23 16 29 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.11 2.09 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -76.55 270.87 0.67 -75.87 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: -0.33 Total: 34.09 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 2.68 Total: -3.82 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -1.73 Total: -87.58 kcal Atomic # 8 Polarization: -60.65 SS G_CDS: -1.97 Total: -62.62 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -76.55 0.67 -75.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308397685.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.170 kcal (2) G-P(sol) polarization free energy of solvation -76.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds