Wall clock time and date at job start Sun Mar 29 2020 22:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99527 * 2 1 4 4 C 1.53003 * 109.46906 * 173.99001 * 3 2 1 5 5 C 1.50699 * 109.47210 * 293.98851 * 3 2 1 6 6 O 1.21286 * 120.00184 * 0.02562 * 5 3 2 7 7 N 1.34773 * 119.99888 * 180.02562 * 5 3 2 8 8 C 1.37104 * 119.99971 * 179.97438 * 7 5 3 9 9 H 1.07997 * 119.99771 * 0.02562 * 8 7 5 10 10 C 1.38948 * 119.99900 * 179.97438 * 8 7 5 11 11 N 1.31415 * 119.99995 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00124 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.47064 * 90.00380 * 12 10 8 14 14 H 1.48504 * 109.46992 * 209.99752 * 12 10 8 15 15 H 1.48498 * 109.47307 * 330.00358 * 12 10 8 16 16 C 1.53006 * 109.47248 * 53.99265 * 3 2 1 17 17 C 1.53001 * 117.49786 * 127.78265 * 16 3 2 18 18 C 1.52994 * 117.50005 * 59.16007 * 16 3 2 19 19 H 1.08996 * 109.47277 * 55.81498 * 1 2 3 20 20 H 1.09005 * 109.47167 * 175.81408 * 1 2 3 21 21 H 1.08999 * 109.47552 * 295.81068 * 1 2 3 22 22 H 1.08999 * 109.47044 * 59.99922 * 4 3 2 23 23 H 1.09005 * 109.47321 * 180.02562 * 4 3 2 24 24 H 1.09009 * 109.47066 * 300.00012 * 4 3 2 25 25 H 0.97000 * 120.00369 * 359.97438 * 7 5 3 26 26 H 0.97000 * 119.99922 * 180.02562 * 11 10 8 27 27 H 1.09004 * 115.54457 * 273.49033 * 16 3 2 28 28 H 1.08991 * 117.50018 * 359.97438 * 17 16 3 29 29 H 1.09001 * 117.49703 * 145.01997 * 17 16 3 30 30 H 1.09002 * 117.49439 * 214.98286 * 18 16 3 31 31 H 1.09001 * 117.49925 * 359.97438 * 18 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5281 1.1880 0.1510 5 6 1.6867 1.9994 -1.2981 6 8 1.0234 1.4319 -2.1402 7 7 2.1345 3.2504 -1.5232 8 6 1.8407 3.8815 -2.7044 9 1 1.2501 3.3762 -3.4542 10 6 2.3020 5.1715 -2.9363 11 7 2.0199 5.7766 -4.0683 12 14 3.3217 6.0462 -1.6385 13 1 4.7612 5.7579 -1.8628 14 1 3.0900 7.5102 -1.7307 15 1 2.9249 5.5660 -0.2905 16 6 1.4427 2.1164 1.1669 17 6 2.4412 2.7878 2.1121 18 6 1.6506 1.5637 2.5783 19 1 -0.3633 0.5774 -0.8501 20 1 -0.3634 -1.0250 -0.0750 21 1 -0.3634 0.4474 0.9251 22 1 3.9323 0.6103 -0.6802 23 1 3.9714 2.1838 0.1515 24 1 3.7621 0.6861 1.0900 25 1 2.6647 3.7044 -0.8497 26 1 2.3423 6.6770 -4.2303 27 1 0.5093 2.6416 0.9645 28 1 3.5021 2.6515 1.9028 29 1 2.1647 3.7551 2.5316 30 1 0.8541 1.7256 3.3046 31 1 2.1912 0.6222 2.6756 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308399334.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:40 Heat of formation + Delta-G solvation = -50.897025 kcal Electronic energy + Delta-G solvation = -15030.776862 eV Core-core repulsion = 12506.705119 eV Total energy + Delta-G solvation = -2524.071743 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.90749 -37.18202 -35.85575 -33.88608 -31.85966 -30.58521 -26.02958 -25.62504 -24.06288 -22.27686 -20.65800 -19.02650 -18.32569 -16.68567 -15.99770 -15.29177 -15.06758 -14.47231 -13.96327 -13.66376 -13.13036 -12.95690 -12.49220 -12.39113 -12.12800 -11.64573 -11.40775 -11.28331 -11.15577 -10.64359 -10.55424 -10.34310 -10.19031 -9.97684 -9.71457 -9.57130 -8.21486 -8.07705 -6.34832 -3.85660 3.00688 3.04585 3.12780 3.60979 3.76701 4.07393 4.27631 4.50329 4.83906 5.01894 5.08597 5.23129 5.24129 5.58352 5.68065 5.75472 5.82882 5.88134 5.90346 6.04849 6.09542 6.18777 6.24746 6.36929 6.46211 7.47482 7.58768 8.11179 8.56157 8.91046 9.39171 9.78416 10.78024 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034223 B = 0.011636 C = 0.009614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.958412 B = 2405.668035 C = 2911.866491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.359 6.359 3 C 0.137 3.863 4 C -0.139 4.139 5 C 0.433 3.567 6 O -0.568 6.568 7 N -0.578 5.578 8 C -0.307 4.307 9 H 0.120 0.880 10 C 0.044 3.956 11 N -0.878 5.878 12 Si 0.873 3.127 13 H -0.269 1.269 14 H -0.275 1.275 15 H -0.266 1.266 16 C -0.181 4.181 17 C -0.179 4.179 18 C -0.164 4.164 19 H 0.069 0.931 20 H 0.075 0.925 21 H 0.033 0.967 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.372 0.628 26 H 0.274 0.726 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.155 -4.722 13.554 14.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.276 6.276 3 C 0.094 3.906 4 C -0.196 4.196 5 C 0.219 3.781 6 O -0.451 6.451 7 N -0.217 5.217 8 C -0.435 4.435 9 H 0.137 0.863 10 C -0.160 4.160 11 N -0.518 5.518 12 Si 0.699 3.301 13 H -0.194 1.194 14 H -0.200 1.200 15 H -0.191 1.191 16 C -0.200 4.200 17 C -0.216 4.216 18 C -0.201 4.201 19 H 0.087 0.913 20 H 0.094 0.906 21 H 0.052 0.948 22 H 0.089 0.911 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.205 0.795 26 H 0.085 0.915 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.829 -5.085 12.834 13.926 hybrid contribution 0.499 1.177 0.853 1.537 sum 2.328 -3.908 13.688 14.424 Atomic orbital electron populations 1.22816 0.81141 1.02251 1.00919 1.87858 1.20326 1.24842 1.94617 1.20790 0.94223 0.84067 0.91554 1.21878 0.91999 1.02677 1.03050 1.20272 0.85575 0.83035 0.89200 1.90527 1.42282 1.65430 1.46837 1.42260 1.48204 1.13679 1.17587 1.19469 1.32451 0.97778 0.93841 0.86252 1.25041 0.97797 0.96409 0.96730 1.69622 1.44835 1.14113 1.23213 0.86747 0.81247 0.80416 0.81645 1.19408 1.20041 1.19117 1.22883 1.01790 1.03944 0.91382 1.23168 0.98062 0.97172 1.03180 1.22854 1.03059 0.98070 0.96087 0.91298 0.90628 0.94845 0.91084 0.90802 0.91376 0.79503 0.91547 0.87374 0.87860 0.88670 0.88956 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.16 101.05 1.03 1.45 16 2 O -0.36 -6.81 10.02 -55.14 -0.55 -7.36 16 3 C 0.14 2.53 0.80 -91.77 -0.07 2.46 16 4 C -0.14 -2.16 7.33 37.16 0.27 -1.89 16 5 C 0.43 10.27 6.14 -10.99 -0.07 10.20 16 6 O -0.57 -15.70 13.97 -14.36 -0.20 -15.90 16 7 N -0.58 -14.02 4.89 -10.97 -0.05 -14.07 16 8 C -0.31 -8.72 10.16 -14.93 -0.15 -8.87 16 9 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 10 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 11 N -0.88 -25.59 13.96 55.50 0.77 -24.82 16 12 Si 0.87 19.27 27.73 -169.99 -4.71 14.55 16 13 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 14 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 16 C -0.18 -2.83 3.55 -90.62 -0.32 -3.16 16 17 C -0.18 -2.29 9.55 -26.73 -0.26 -2.55 16 18 C -0.16 -2.01 9.70 -26.74 -0.26 -2.27 16 19 H 0.07 1.39 5.87 -51.93 -0.30 1.09 16 20 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 21 H 0.03 0.50 7.07 -51.93 -0.37 0.13 16 22 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.07 1.07 6.44 -51.93 -0.33 0.73 16 24 H 0.07 0.88 7.09 -51.92 -0.37 0.51 16 25 H 0.37 8.02 5.08 -40.82 -0.21 7.81 16 26 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.11 1.81 8.10 -51.93 -0.42 1.39 16 28 H 0.10 1.22 5.84 -51.93 -0.30 0.92 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.10 1.17 7.66 -51.93 -0.40 0.78 16 LS Contribution 255.61 15.07 3.85 3.85 Total: -1.00 -31.96 255.61 -4.77 -36.73 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -3.95 Total: 10.54 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 0.07 Total: -3.52 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.72 Total: -38.89 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.75 Total: -23.26 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.96 -4.77 -36.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308399334.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.167 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds