Wall clock time and date at job start Sun Mar 29 2020 22:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99527 * 2 1 4 4 C 1.53003 * 109.46906 * 173.99001 * 3 2 1 5 5 C 1.50699 * 109.47210 * 293.98851 * 3 2 1 6 6 O 1.21286 * 120.00184 * 0.02562 * 5 3 2 7 7 N 1.34773 * 119.99888 * 180.02562 * 5 3 2 8 8 C 1.37104 * 119.99971 * 179.97438 * 7 5 3 9 9 H 1.07997 * 119.99771 * 0.02562 * 8 7 5 10 10 C 1.38948 * 119.99900 * 179.97438 * 8 7 5 11 11 N 1.31415 * 119.99995 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00124 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.47064 * 90.00380 * 12 10 8 14 14 H 1.48504 * 109.46992 * 209.99752 * 12 10 8 15 15 H 1.48498 * 109.47307 * 330.00358 * 12 10 8 16 16 C 1.53006 * 109.47248 * 53.99265 * 3 2 1 17 17 C 1.53001 * 117.49786 * 127.78265 * 16 3 2 18 18 C 1.52994 * 117.50005 * 59.16007 * 16 3 2 19 19 H 1.08996 * 109.47277 * 55.81498 * 1 2 3 20 20 H 1.09005 * 109.47167 * 175.81408 * 1 2 3 21 21 H 1.08999 * 109.47552 * 295.81068 * 1 2 3 22 22 H 1.08999 * 109.47044 * 59.99922 * 4 3 2 23 23 H 1.09005 * 109.47321 * 180.02562 * 4 3 2 24 24 H 1.09009 * 109.47066 * 300.00012 * 4 3 2 25 25 H 0.97000 * 120.00369 * 359.97438 * 7 5 3 26 26 H 0.97000 * 119.99922 * 180.02562 * 11 10 8 27 27 H 1.09004 * 115.54457 * 273.49033 * 16 3 2 28 28 H 1.08991 * 117.50018 * 359.97438 * 17 16 3 29 29 H 1.09001 * 117.49703 * 145.01997 * 17 16 3 30 30 H 1.09002 * 117.49439 * 214.98286 * 18 16 3 31 31 H 1.09001 * 117.49925 * 359.97438 * 18 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5281 1.1880 0.1510 5 6 1.6867 1.9994 -1.2981 6 8 1.0234 1.4319 -2.1402 7 7 2.1345 3.2504 -1.5232 8 6 1.8407 3.8815 -2.7044 9 1 1.2501 3.3762 -3.4542 10 6 2.3020 5.1715 -2.9363 11 7 2.0199 5.7766 -4.0683 12 14 3.3217 6.0462 -1.6385 13 1 4.7612 5.7579 -1.8628 14 1 3.0900 7.5102 -1.7307 15 1 2.9249 5.5660 -0.2905 16 6 1.4427 2.1164 1.1669 17 6 2.4412 2.7878 2.1121 18 6 1.6506 1.5637 2.5783 19 1 -0.3633 0.5774 -0.8501 20 1 -0.3634 -1.0250 -0.0750 21 1 -0.3634 0.4474 0.9251 22 1 3.9323 0.6103 -0.6802 23 1 3.9714 2.1838 0.1515 24 1 3.7621 0.6861 1.0900 25 1 2.6647 3.7044 -0.8497 26 1 2.3423 6.6770 -4.2303 27 1 0.5093 2.6416 0.9645 28 1 3.5021 2.6515 1.9028 29 1 2.1647 3.7551 2.5316 30 1 0.8541 1.7256 3.3046 31 1 2.1912 0.6222 2.6756 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308399334.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:40 Heat of formation + Delta-G solvation = -74.067290 kcal Electronic energy + Delta-G solvation = -15031.781600 eV Core-core repulsion = 12506.705119 eV Total energy + Delta-G solvation = -2525.076481 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.45612 -38.84589 -37.19826 -35.89610 -33.87587 -32.01588 -27.66312 -27.11423 -25.69421 -23.21141 -22.25724 -20.94863 -20.02748 -18.15708 -17.52500 -17.04712 -16.54542 -15.97832 -15.60594 -15.21801 -14.96667 -14.42941 -14.31982 -13.70522 -13.54021 -13.06829 -13.00059 -12.68861 -12.45248 -12.21044 -12.04829 -11.90447 -11.54910 -11.41483 -11.30137 -11.09671 -10.29841 -9.86779 -8.46325 -6.07673 1.27140 1.31541 1.41840 1.81327 2.19577 2.59577 2.75183 3.05388 3.14177 3.65415 3.82936 3.95745 4.05225 4.26660 4.45068 4.54422 4.64983 4.73932 4.76458 4.87038 4.94474 4.99836 5.08548 5.26721 5.31468 5.48597 5.87827 6.10849 6.53161 6.80762 7.31519 7.86011 8.70999 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034223 B = 0.011636 C = 0.009614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.958412 B = 2405.668035 C = 2911.866491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.370 6.370 3 C 0.144 3.856 4 C -0.139 4.139 5 C 0.428 3.572 6 O -0.619 6.619 7 N -0.573 5.573 8 C -0.334 4.334 9 H 0.054 0.946 10 C -0.010 4.010 11 N -0.929 5.929 12 Si 0.955 3.045 13 H -0.251 1.251 14 H -0.271 1.271 15 H -0.228 1.228 16 C -0.214 4.214 17 C -0.166 4.166 18 C -0.139 4.139 19 H 0.027 0.973 20 H 0.099 0.901 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.089 0.911 24 H 0.104 0.896 25 H 0.389 0.611 26 H 0.281 0.719 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.100 -4.297 17.597 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.288 6.288 3 C 0.100 3.900 4 C -0.196 4.196 5 C 0.216 3.784 6 O -0.505 6.505 7 N -0.214 5.214 8 C -0.463 4.463 9 H 0.072 0.928 10 C -0.210 4.210 11 N -0.569 5.569 12 Si 0.774 3.226 13 H -0.175 1.175 14 H -0.196 1.196 15 H -0.151 1.151 16 C -0.233 4.233 17 C -0.203 4.203 18 C -0.175 4.175 19 H 0.046 0.954 20 H 0.117 0.883 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.107 0.893 24 H 0.123 0.877 25 H 0.225 0.775 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.137 0.863 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.774 -4.678 16.898 17.935 hybrid contribution -0.218 0.958 -0.506 1.105 sum 3.556 -3.720 16.392 17.181 Atomic orbital electron populations 1.22852 0.80540 1.03274 1.00341 1.87837 1.21074 1.25452 1.94440 1.20828 0.96338 0.83566 0.89226 1.21982 0.89317 1.03926 1.04415 1.21612 0.83531 0.82557 0.90734 1.90502 1.44106 1.66592 1.49323 1.42025 1.48788 1.13994 1.16615 1.19036 1.33614 0.98851 0.94776 0.92772 1.26121 0.98662 0.96514 0.99677 1.69799 1.46157 1.14899 1.26029 0.85510 0.79337 0.78512 0.79278 1.17524 1.19554 1.15115 1.22655 1.02459 1.06165 0.92039 1.23382 0.98257 0.98093 1.00562 1.22982 1.03071 0.98410 0.93063 0.95405 0.88308 0.92355 0.92492 0.89261 0.87749 0.77476 0.90947 0.89313 0.86274 0.87299 0.87104 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 10.16 113.37 1.15 2.03 16 2 O -0.37 -13.66 10.02 -129.94 -1.30 -14.96 16 3 C 0.14 5.09 0.80 -11.54 -0.01 5.08 16 4 C -0.14 -3.89 7.33 71.98 0.53 -3.37 16 5 C 0.43 20.79 6.14 87.66 0.54 21.32 16 6 O -0.62 -36.45 13.97 15.99 0.22 -36.23 16 7 N -0.57 -28.09 4.89 -306.99 -1.50 -29.59 16 8 C -0.33 -19.94 10.16 84.04 0.85 -19.08 16 9 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 10 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 11 N -0.93 -56.07 13.96 21.66 0.30 -55.77 16 12 Si 0.95 38.36 27.73 68.60 1.90 40.27 16 13 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 14 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 15 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16 16 C -0.21 -6.08 3.55 -10.79 -0.04 -6.12 16 17 C -0.17 -3.38 9.55 30.59 0.29 -3.09 16 18 C -0.14 -2.72 9.70 30.59 0.30 -2.42 16 19 H 0.03 1.17 5.87 -2.39 -0.01 1.15 16 20 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 21 H 0.06 1.66 7.07 -2.39 -0.02 1.64 16 22 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.09 2.20 6.44 -2.38 -0.02 2.19 16 24 H 0.10 2.17 7.09 -2.38 -0.02 2.16 16 25 H 0.39 15.98 5.08 -92.71 -0.47 15.51 16 26 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 27 H 0.09 2.85 8.10 -2.38 -0.02 2.84 16 28 H 0.12 2.07 5.84 -2.39 -0.01 2.05 16 29 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.11 1.97 7.66 -2.39 -0.02 1.95 16 Total: -1.00 -75.95 255.61 4.31 -71.63 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.61 Total: 30.41 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 4.08 Total: -5.76 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -1.20 Total: -85.36 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -1.08 Total: -51.19 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 1.90 Total: 40.27 kcal Total: -75.95 4.31 -71.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308399334.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.435 kcal (2) G-P(sol) polarization free energy of solvation -75.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds