Wall clock time and date at job start Sun Mar 29 2020 21:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86800 * 119.99820 * 2 1 4 4 H 1.48500 * 109.47020 * 269.99932 * 3 2 1 5 5 H 1.48497 * 109.47315 * 29.99955 * 3 2 1 6 6 H 1.48497 * 109.46701 * 150.00315 * 3 2 1 7 7 C 1.40047 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00184 * 179.97438 * 7 2 1 9 9 C 1.46372 * 120.00294 * 0.02562 * 7 2 1 10 10 O 1.21692 * 119.99975 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99965 * 180.02562 * 9 7 2 12 12 C 1.46506 * 119.99688 * 179.97438 * 11 9 7 13 13 H 1.08990 * 109.47427 * 35.00063 * 12 11 9 14 14 C 1.53000 * 109.46901 * 155.00173 * 12 11 9 15 15 C 1.52997 * 109.47060 * 294.99627 * 14 12 11 16 16 O 1.42895 * 109.47503 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.47102 * 274.99602 * 12 11 9 18 18 C 1.53001 * 117.49742 * 128.74734 * 17 12 11 19 19 C 1.53001 * 117.49801 * 60.08746 * 17 12 11 20 20 H 0.97001 * 120.00748 * 359.97438 * 1 2 3 21 21 H 0.96993 * 120.00319 * 0.02562 * 11 9 7 22 22 H 1.09002 * 109.47398 * 54.99796 * 14 12 11 23 23 H 1.09001 * 109.47194 * 174.99977 * 14 12 11 24 24 H 1.09002 * 109.47153 * 300.00319 * 15 14 12 25 25 H 1.08998 * 109.47533 * 59.99948 * 15 14 12 26 26 H 0.96698 * 114.00355 * 180.02562 * 16 15 14 27 27 H 1.09001 * 115.55234 * 274.42015 * 17 12 11 28 28 H 1.08996 * 117.50206 * 0.02562 * 18 17 12 29 29 H 1.09006 * 117.49807 * 145.02460 * 18 17 12 30 30 H 1.08996 * 117.50505 * 214.98026 * 19 17 12 31 31 H 1.09003 * 117.49537 * 359.97438 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5382 1.4401 0.7000 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0016 12 6 1.2164 -4.9164 0.0022 13 1 0.3060 -4.8106 -0.5877 14 6 2.0939 -6.0122 -0.6064 15 6 2.3552 -5.6964 -2.0804 16 8 3.1742 -6.7201 -2.6490 17 6 0.8521 -5.2943 1.4393 18 6 -0.6083 -5.6477 1.7282 19 6 -0.0291 -4.3203 2.2241 20 1 -0.4851 0.8400 0.0004 21 1 2.9189 -3.6477 0.0027 22 1 3.0422 -6.0576 -0.0708 23 1 1.5845 -6.9725 -0.5253 24 1 1.4069 -5.6510 -2.6159 25 1 2.8645 -4.7362 -2.1616 26 1 3.3810 -6.5845 -3.5838 27 1 1.6198 -5.8358 1.9921 28 1 -1.3094 -5.6114 0.8944 29 1 -0.8013 -6.4214 2.4714 30 1 0.1586 -4.2213 3.2932 31 1 -0.3488 -3.4102 1.7166 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308415639.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:26 Heat of formation + Delta-G solvation = -76.565725 kcal Electronic energy + Delta-G solvation = -14482.496937 eV Core-core repulsion = 11957.312115 eV Total energy + Delta-G solvation = -2525.184821 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.52042 -36.64066 -35.85619 -33.39313 -32.39643 -30.26929 -26.57019 -25.04968 -21.69472 -21.22876 -20.42987 -19.26464 -17.46132 -16.81533 -15.59137 -15.04785 -14.91202 -14.38035 -14.08190 -13.79210 -13.22727 -12.37762 -12.05855 -11.79999 -11.25880 -11.18805 -11.05447 -11.03971 -10.61047 -10.52615 -10.43631 -10.20296 -9.75154 -9.63606 -9.44524 -8.85723 -7.60604 -7.40173 -6.19102 -4.64228 3.12923 3.20428 3.23516 4.08761 4.31655 4.40964 4.58466 5.02554 5.30121 5.38350 5.45476 5.60347 5.73250 5.77522 5.85630 5.94187 6.15209 6.15760 6.21122 6.34508 6.59777 6.66173 6.79880 7.30951 7.43398 7.74698 7.94633 8.13271 8.33901 9.02488 9.55649 10.59602 10.79063 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028082 B = 0.009466 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.835884 B = 2957.160771 C = 3685.387657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.089 3.911 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.559 3.441 10 O -0.576 6.576 11 N -0.760 5.760 12 C 0.187 3.813 13 H 0.077 0.923 14 C -0.118 4.118 15 C 0.075 3.925 16 O -0.581 6.581 17 C -0.163 4.163 18 C -0.184 4.184 19 C -0.175 4.175 20 H 0.268 0.732 21 H 0.379 0.621 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.375 0.625 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.982 -7.844 -1.240 8.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.084 0.916 9 C 0.364 3.636 10 O -0.460 6.460 11 N -0.413 5.413 12 C 0.080 3.920 13 H 0.095 0.905 14 C -0.156 4.156 15 C -0.002 4.002 16 O -0.387 6.387 17 C -0.183 4.183 18 C -0.222 4.222 19 C -0.211 4.211 20 H 0.078 0.922 21 H 0.210 0.790 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.222 0.778 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.858 -7.962 -0.635 8.484 hybrid contribution 1.002 1.002 -0.438 1.483 sum 3.860 -6.960 -1.073 8.031 Atomic orbital electron populations 1.70005 1.06949 1.27193 1.35414 1.25676 0.94597 1.00170 0.92643 0.86418 0.80222 0.81612 0.78769 1.19836 1.20493 1.18969 1.20897 0.93563 0.89526 1.54279 0.91607 1.18131 0.87210 0.82371 0.75924 1.90515 1.13990 1.86711 1.54805 1.46233 1.08367 1.04643 1.82104 1.20000 0.95440 0.84100 0.92418 0.90486 1.21729 1.00676 0.99279 0.93948 1.22222 0.93528 0.90149 0.94295 1.86425 1.72734 1.50167 1.29327 1.22650 0.92878 1.04546 0.98242 1.22873 0.96166 0.99786 1.03373 1.23393 1.02587 0.96203 0.98950 0.92171 0.78989 0.91358 0.90870 0.93782 0.92732 0.77846 0.89163 0.89230 0.90122 0.90661 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.43 11.83 55.55 0.66 -21.78 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 3 Si 0.90 19.93 29.56 -169.99 -5.02 14.91 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.55 -15.04 9.54 -35.63 -0.34 -15.38 16 8 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 9 C 0.56 15.15 7.08 -12.99 -0.09 15.06 16 10 O -0.58 -17.45 12.04 5.20 0.06 -17.39 16 11 N -0.76 -16.38 4.51 -55.21 -0.25 -16.63 16 12 C 0.19 3.54 2.27 -67.93 -0.15 3.38 16 13 H 0.08 1.65 7.33 -51.93 -0.38 1.27 16 14 C -0.12 -1.84 5.11 -26.73 -0.14 -1.97 16 15 C 0.08 1.13 6.93 37.16 0.26 1.39 16 16 O -0.58 -7.97 13.66 -35.23 -0.48 -8.45 16 17 C -0.16 -2.97 5.36 -90.62 -0.49 -3.46 16 18 C -0.18 -3.18 10.18 -26.69 -0.27 -3.45 16 19 C -0.17 -3.56 9.74 -26.69 -0.26 -3.82 16 20 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 21 H 0.38 7.39 8.58 -40.82 -0.35 7.04 16 22 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 23 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.85 7.75 -51.93 -0.40 0.45 16 26 H 0.38 3.39 9.12 45.56 0.42 3.81 16 27 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 28 H 0.09 1.58 8.05 -51.93 -0.42 1.16 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.14 3.43 5.01 -51.93 -0.26 3.17 16 LS Contribution 265.43 15.07 4.00 4.00 Total: -1.00 -32.30 265.43 -6.09 -38.39 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -3.48 Total: 12.86 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -1.58 Total: -5.92 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.41 Total: -38.41 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.42 Total: -25.83 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.30 -6.09 -38.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308415639.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.171 kcal (2) G-P(sol) polarization free energy of solvation -32.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds