Wall clock time and date at job start Sun Mar 29 2020 21:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86800 * 119.99820 * 2 1 4 4 H 1.48500 * 109.47020 * 269.99932 * 3 2 1 5 5 H 1.48497 * 109.47315 * 29.99955 * 3 2 1 6 6 H 1.48497 * 109.46701 * 150.00315 * 3 2 1 7 7 C 1.40047 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00184 * 179.97438 * 7 2 1 9 9 C 1.46372 * 120.00294 * 0.02562 * 7 2 1 10 10 O 1.21692 * 119.99975 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99965 * 180.02562 * 9 7 2 12 12 C 1.46506 * 119.99688 * 179.97438 * 11 9 7 13 13 H 1.08990 * 109.47427 * 35.00063 * 12 11 9 14 14 C 1.53000 * 109.46901 * 155.00173 * 12 11 9 15 15 C 1.52997 * 109.47060 * 294.99627 * 14 12 11 16 16 O 1.42895 * 109.47503 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.47102 * 274.99602 * 12 11 9 18 18 C 1.53001 * 117.49742 * 128.74734 * 17 12 11 19 19 C 1.53001 * 117.49801 * 60.08746 * 17 12 11 20 20 H 0.97001 * 120.00748 * 359.97438 * 1 2 3 21 21 H 0.96993 * 120.00319 * 0.02562 * 11 9 7 22 22 H 1.09002 * 109.47398 * 54.99796 * 14 12 11 23 23 H 1.09001 * 109.47194 * 174.99977 * 14 12 11 24 24 H 1.09002 * 109.47153 * 300.00319 * 15 14 12 25 25 H 1.08998 * 109.47533 * 59.99948 * 15 14 12 26 26 H 0.96698 * 114.00355 * 180.02562 * 16 15 14 27 27 H 1.09001 * 115.55234 * 274.42015 * 17 12 11 28 28 H 1.08996 * 117.50206 * 0.02562 * 18 17 12 29 29 H 1.09006 * 117.49807 * 145.02460 * 18 17 12 30 30 H 1.08996 * 117.50505 * 214.98026 * 19 17 12 31 31 H 1.09003 * 117.49537 * 359.97438 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5382 1.4401 0.7000 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0016 12 6 1.2164 -4.9164 0.0022 13 1 0.3060 -4.8106 -0.5877 14 6 2.0939 -6.0122 -0.6064 15 6 2.3552 -5.6964 -2.0804 16 8 3.1742 -6.7201 -2.6490 17 6 0.8521 -5.2943 1.4393 18 6 -0.6083 -5.6477 1.7282 19 6 -0.0291 -4.3203 2.2241 20 1 -0.4851 0.8400 0.0004 21 1 2.9189 -3.6477 0.0027 22 1 3.0422 -6.0576 -0.0708 23 1 1.5845 -6.9725 -0.5253 24 1 1.4069 -5.6510 -2.6159 25 1 2.8645 -4.7362 -2.1616 26 1 3.3810 -6.5845 -3.5838 27 1 1.6198 -5.8358 1.9921 28 1 -1.3094 -5.6114 0.8944 29 1 -0.8013 -6.4214 2.4714 30 1 0.1586 -4.2213 3.2932 31 1 -0.3488 -3.4102 1.7166 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308415639.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:26 Heat of formation + Delta-G solvation = -101.796711 kcal Electronic energy + Delta-G solvation = -14483.591034 eV Core-core repulsion = 11957.312115 eV Total energy + Delta-G solvation = -2526.278919 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.20967 -38.00958 -37.49815 -35.05678 -34.44708 -31.89530 -28.48639 -26.63438 -23.18812 -22.59332 -22.22659 -20.96936 -19.18612 -18.20255 -17.47215 -16.78649 -16.28409 -15.89097 -15.73609 -15.43373 -14.58886 -14.30955 -13.84094 -13.33281 -12.89623 -12.81834 -12.64111 -12.53765 -12.44028 -12.18296 -12.03416 -11.87714 -11.14620 -10.95269 -10.90481 -10.88441 -9.72331 -9.28726 -8.24400 -6.79652 1.40250 1.41106 1.55708 2.25346 2.51804 2.82073 3.18744 3.41986 3.66605 4.01302 4.09679 4.11536 4.25104 4.27849 4.43987 4.53145 4.78184 4.81644 4.84721 5.06517 5.12836 5.19526 5.34699 5.35470 5.58811 5.96360 6.29218 6.38013 6.86211 6.92169 7.63850 8.56676 8.74830 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028082 B = 0.009466 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.835884 B = 2957.160771 C = 3685.387657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.032 3.968 3 Si 0.990 3.010 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.252 1.252 7 C -0.575 4.575 8 H 0.081 0.919 9 C 0.548 3.452 10 O -0.616 6.616 11 N -0.747 5.747 12 C 0.187 3.813 13 H 0.045 0.955 14 C -0.107 4.107 15 C 0.081 3.919 16 O -0.586 6.586 17 C -0.157 4.157 18 C -0.159 4.159 19 C -0.205 4.205 20 H 0.272 0.728 21 H 0.391 0.609 22 H 0.081 0.919 23 H 0.089 0.911 24 H 0.039 0.961 25 H 0.044 0.956 26 H 0.396 0.604 27 H 0.119 0.881 28 H 0.079 0.921 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.789 -8.727 -1.032 10.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.183 4.183 3 Si 0.810 3.190 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.175 1.175 7 C -0.612 4.612 8 H 0.099 0.901 9 C 0.351 3.649 10 O -0.503 6.503 11 N -0.400 5.400 12 C 0.081 3.919 13 H 0.063 0.937 14 C -0.145 4.145 15 C 0.003 3.997 16 O -0.394 6.394 17 C -0.177 4.177 18 C -0.197 4.197 19 C -0.242 4.242 20 H 0.082 0.918 21 H 0.224 0.776 22 H 0.099 0.901 23 H 0.108 0.892 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.246 0.754 27 H 0.137 0.863 28 H 0.098 0.902 29 H 0.136 0.864 30 H 0.106 0.894 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.707 -8.891 -0.448 10.070 hybrid contribution 0.427 1.189 -0.536 1.373 sum 5.134 -7.702 -0.984 9.308 Atomic orbital electron populations 1.70170 1.09226 1.28623 1.36824 1.26836 0.95461 1.04559 0.91418 0.85127 0.78830 0.75745 0.79270 1.18771 1.20003 1.17533 1.21422 0.94530 0.90473 1.54801 0.90060 1.18369 0.86881 0.83963 0.75639 1.90496 1.15747 1.87661 1.56371 1.45911 1.08889 1.04451 1.80766 1.20090 0.94753 0.83917 0.93142 0.93716 1.21603 1.00536 0.98226 0.94133 1.22042 0.93453 0.90047 0.94177 1.86368 1.72297 1.49497 1.31284 1.22740 0.94190 1.03437 0.97288 1.22936 0.95201 0.98272 1.03268 1.23149 1.05934 0.95665 0.99448 0.91812 0.77592 0.90051 0.89213 0.94270 0.93798 0.75427 0.86295 0.90238 0.86429 0.89357 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.53 11.83 21.84 0.26 -49.27 16 2 C 0.03 1.79 5.50 85.30 0.47 2.26 16 3 Si 0.99 40.97 29.56 68.60 2.03 43.00 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 7 C -0.58 -32.16 9.54 24.83 0.24 -31.92 16 8 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 9 C 0.55 30.58 7.08 86.36 0.61 31.19 16 10 O -0.62 -39.18 12.04 -4.32 -0.05 -39.23 16 11 N -0.75 -32.37 4.51 -446.81 -2.01 -34.39 16 12 C 0.19 6.99 2.27 44.99 0.10 7.09 16 13 H 0.04 1.97 7.33 -2.39 -0.02 1.96 16 14 C -0.11 -3.09 5.11 30.59 0.16 -2.93 16 15 C 0.08 2.29 6.93 71.98 0.50 2.79 16 16 O -0.59 -14.56 13.66 -148.98 -2.03 -16.60 16 17 C -0.16 -5.48 5.36 -10.79 -0.06 -5.54 16 18 C -0.16 -5.28 10.18 30.62 0.31 -4.96 16 19 C -0.20 -8.45 9.74 30.62 0.30 -8.15 16 20 H 0.27 15.01 8.29 -92.71 -0.77 14.25 16 21 H 0.39 14.96 8.58 -92.71 -0.80 14.17 16 22 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 24 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.04 1.33 7.75 -2.39 -0.02 1.31 16 26 H 0.40 6.17 9.12 -74.06 -0.68 5.49 16 27 H 0.12 3.51 8.11 -2.39 -0.02 3.49 16 28 H 0.08 2.79 8.05 -2.39 -0.02 2.77 16 29 H 0.12 3.05 8.14 -2.38 -0.02 3.03 16 30 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 31 H 0.08 4.44 5.01 -2.39 -0.01 4.42 16 Total: -1.00 -72.36 265.43 0.49 -71.87 By element: Atomic # 1 Polarization: 35.11 SS G_CDS: -0.33 Total: 34.79 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 2.63 Total: -10.17 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -1.76 Total: -83.65 kcal Atomic # 8 Polarization: -53.74 SS G_CDS: -2.09 Total: -55.83 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -72.36 0.49 -71.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308415639.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.925 kcal (2) G-P(sol) polarization free energy of solvation -72.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds