Wall clock time and date at job start Sun Mar 29 2020 21:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86794 * 120.00484 * 2 1 4 4 H 1.48501 * 109.47436 * 269.99736 * 3 2 1 5 5 H 1.48506 * 109.47170 * 29.99501 * 3 2 1 6 6 H 1.48499 * 109.47399 * 149.99386 * 3 2 1 7 7 C 1.40054 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00082 * 180.02562 * 7 2 1 9 9 C 1.46374 * 119.99796 * 0.02562 * 7 2 1 10 10 O 1.21685 * 120.00179 * 359.97438 * 9 7 2 11 11 N 1.34780 * 119.99551 * 179.97438 * 9 7 2 12 12 C 1.46500 * 119.99947 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.47657 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47345 * 180.02562 * 13 12 11 15 15 O 1.42896 * 112.91057 * 53.74912 * 14 13 12 16 16 C 1.53784 * 113.61270 * 282.49469 * 14 13 12 17 17 C 1.53779 * 87.08045 * 220.02125 * 16 14 13 18 18 C 1.53779 * 87.08402 * 25.43458 * 17 16 14 19 19 H 0.97006 * 119.99957 * 0.02562 * 1 2 3 20 20 H 0.96995 * 120.00441 * 359.97438 * 11 9 7 21 21 H 1.09005 * 109.47010 * 59.99512 * 12 11 9 22 22 H 1.09008 * 109.47028 * 300.00049 * 12 11 9 23 23 H 1.09001 * 109.46833 * 59.99634 * 13 12 11 24 24 H 1.08999 * 109.47056 * 300.00123 * 13 12 11 25 25 H 0.96699 * 113.99840 * 311.24594 * 15 14 13 26 26 H 1.09002 * 113.61478 * 334.57090 * 16 14 13 27 27 H 1.09004 * 113.61162 * 105.47268 * 16 14 13 28 28 H 1.09006 * 113.61307 * 270.88660 * 17 16 14 29 29 H 1.09007 * 113.61642 * 139.98417 * 17 16 14 30 30 H 1.08997 * 113.61646 * 220.02209 * 18 17 16 31 31 H 1.09000 * 113.61527 * 89.11480 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4884 2.0463 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4400 0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2749 -2.4805 0.0005 10 8 0.0581 -2.4804 0.0005 11 7 1.9488 -3.6477 0.0005 12 6 1.2163 -4.9165 0.0011 13 6 2.2104 -6.0795 0.0016 14 6 1.4453 -7.4044 0.0016 15 8 0.4935 -7.4971 -1.0602 16 6 0.8728 -7.7852 1.3772 17 6 1.2864 -9.2322 1.0612 18 6 2.3528 -8.6398 0.1249 19 1 -0.4850 0.8401 -0.0004 20 1 2.9187 -3.6478 0.0002 21 1 0.5892 -4.9743 -0.8886 22 1 0.5899 -4.9740 0.8914 23 1 2.8371 -6.0213 0.8916 24 1 2.8370 -6.0222 -0.8884 25 1 -0.0803 -6.7231 -1.1427 26 1 1.4183 -7.3478 2.2134 27 1 -0.2056 -7.6464 1.4549 28 1 0.5169 -9.8026 0.5409 29 1 1.7032 -9.7639 1.9166 30 1 2.4693 -9.1908 -0.8082 31 1 3.3029 -8.4361 0.6188 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308419485.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:16 Heat of formation + Delta-G solvation = -80.454233 kcal Electronic energy + Delta-G solvation = -14091.688589 eV Core-core repulsion = 11566.335150 eV Total energy + Delta-G solvation = -2525.353440 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.71400 -37.22139 -34.59521 -33.69194 -32.35369 -29.89342 -26.46370 -25.77202 -24.17896 -21.45105 -19.73035 -19.59890 -17.25849 -16.34109 -15.53374 -15.27194 -14.92443 -14.64372 -14.14078 -13.73877 -13.35491 -12.58597 -12.49812 -12.27768 -11.68884 -11.42379 -11.18021 -11.08755 -11.02109 -10.89596 -10.63703 -10.48927 -10.24867 -9.99088 -9.56110 -8.85757 -7.62850 -7.52288 -6.19208 -4.64848 3.13916 3.20614 3.24056 4.08832 4.10415 4.51469 4.58263 4.59655 4.78506 4.85770 5.12896 5.44546 5.55275 5.63168 5.66286 5.72728 5.81687 5.86951 5.93144 6.04343 6.24247 6.31446 6.49841 6.56030 7.42798 7.74681 7.91915 8.08432 8.32077 9.01880 9.52388 10.59374 10.77705 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.077018 B = 0.005656 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.462480 B = 4949.304351 C = 5087.720601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.553 3.447 10 O -0.582 6.582 11 N -0.767 5.767 12 C 0.131 3.869 13 C -0.147 4.147 14 C 0.114 3.886 15 O -0.548 6.548 16 C -0.166 4.166 17 C -0.136 4.136 18 C -0.128 4.128 19 H 0.268 0.732 20 H 0.380 0.620 21 H 0.045 0.955 22 H 0.049 0.951 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.384 0.616 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.197 -12.461 1.496 13.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.086 0.914 9 C 0.357 3.643 10 O -0.465 6.465 11 N -0.423 5.423 12 C 0.006 3.994 13 C -0.185 4.185 14 C 0.072 3.928 15 O -0.356 6.356 16 C -0.204 4.204 17 C -0.173 4.173 18 C -0.165 4.165 19 H 0.079 0.921 20 H 0.211 0.789 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.234 0.766 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.381 -12.928 1.414 13.723 hybrid contribution 0.658 1.366 0.090 1.518 sum 5.039 -11.563 1.503 12.702 Atomic orbital electron populations 1.70021 1.07082 1.27270 1.35356 1.25711 0.94617 1.00308 0.92593 0.86368 0.80133 0.81372 0.78838 1.19727 1.20444 1.18923 1.20895 0.93590 0.89435 1.54431 0.91433 1.18240 0.87228 0.82493 0.76340 1.90593 1.14096 1.86893 1.54897 1.46113 1.08531 1.04839 1.82832 1.20800 0.94203 0.84103 1.00332 1.22327 0.99131 0.94030 1.03048 1.22099 0.89846 0.93889 0.86985 1.86384 1.50223 1.46439 1.52509 1.23627 1.01991 0.96742 0.98009 1.22753 0.98861 0.96459 0.99222 1.23028 0.97292 0.95881 1.00297 0.92099 0.78855 0.93641 0.93305 0.90571 0.90964 0.76580 0.89374 0.90928 0.90035 0.91649 0.90832 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.22 11.83 55.55 0.66 -22.56 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 3 Si 0.91 20.18 29.56 -169.99 -5.02 15.15 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.55 -15.56 9.54 -35.63 -0.34 -15.90 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.55 15.90 7.75 -12.99 -0.10 15.80 16 10 O -0.58 -19.00 15.02 5.20 0.08 -18.92 16 11 N -0.77 -17.19 5.55 -61.72 -0.34 -17.54 16 12 C 0.13 2.46 5.24 -4.04 -0.02 2.44 16 13 C -0.15 -2.08 4.97 -26.73 -0.13 -2.21 16 14 C 0.11 1.48 1.39 -89.80 -0.12 1.36 16 15 O -0.55 -7.86 13.40 -35.23 -0.47 -8.33 16 16 C -0.17 -2.00 7.32 -25.92 -0.19 -2.19 16 17 C -0.14 -1.44 8.02 -25.92 -0.21 -1.65 16 18 C -0.13 -1.41 7.47 -25.92 -0.19 -1.61 16 19 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 20 H 0.38 7.45 8.45 -40.82 -0.35 7.10 16 21 H 0.05 0.89 6.72 -51.93 -0.35 0.54 16 22 H 0.05 0.97 8.05 -51.92 -0.42 0.56 16 23 H 0.08 0.99 8.05 -51.93 -0.42 0.57 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.38 5.05 7.13 45.56 0.32 5.37 16 26 H 0.09 1.01 8.04 -51.93 -0.42 0.59 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.88 8.10 -51.93 -0.42 0.45 16 LS Contribution 265.26 15.07 4.00 4.00 Total: -1.00 -34.39 265.26 -6.22 -40.61 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -3.70 Total: 9.20 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -1.41 Total: -1.60 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.31 Total: -40.10 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.39 Total: -27.25 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -34.39 -6.22 -40.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308419485.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.844 kcal (2) G-P(sol) polarization free energy of solvation -34.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds