Wall clock time and date at job start Sun Mar 29 2020 21:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86794 * 120.00484 * 2 1 4 4 H 1.48501 * 109.47436 * 269.99736 * 3 2 1 5 5 H 1.48506 * 109.47170 * 29.99501 * 3 2 1 6 6 H 1.48499 * 109.47399 * 149.99386 * 3 2 1 7 7 C 1.40054 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00082 * 180.02562 * 7 2 1 9 9 C 1.46374 * 119.99796 * 0.02562 * 7 2 1 10 10 O 1.21685 * 120.00179 * 359.97438 * 9 7 2 11 11 N 1.34780 * 119.99551 * 179.97438 * 9 7 2 12 12 C 1.46500 * 119.99947 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.47657 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47345 * 180.02562 * 13 12 11 15 15 O 1.42896 * 112.91057 * 53.74912 * 14 13 12 16 16 C 1.53784 * 113.61270 * 282.49469 * 14 13 12 17 17 C 1.53779 * 87.08045 * 220.02125 * 16 14 13 18 18 C 1.53779 * 87.08402 * 25.43458 * 17 16 14 19 19 H 0.97006 * 119.99957 * 0.02562 * 1 2 3 20 20 H 0.96995 * 120.00441 * 359.97438 * 11 9 7 21 21 H 1.09005 * 109.47010 * 59.99512 * 12 11 9 22 22 H 1.09008 * 109.47028 * 300.00049 * 12 11 9 23 23 H 1.09001 * 109.46833 * 59.99634 * 13 12 11 24 24 H 1.08999 * 109.47056 * 300.00123 * 13 12 11 25 25 H 0.96699 * 113.99840 * 311.24594 * 15 14 13 26 26 H 1.09002 * 113.61478 * 334.57090 * 16 14 13 27 27 H 1.09004 * 113.61162 * 105.47268 * 16 14 13 28 28 H 1.09006 * 113.61307 * 270.88660 * 17 16 14 29 29 H 1.09007 * 113.61642 * 139.98417 * 17 16 14 30 30 H 1.08997 * 113.61646 * 220.02209 * 18 17 16 31 31 H 1.09000 * 113.61527 * 89.11480 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4884 2.0463 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4400 0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2749 -2.4805 0.0005 10 8 0.0581 -2.4804 0.0005 11 7 1.9488 -3.6477 0.0005 12 6 1.2163 -4.9165 0.0011 13 6 2.2104 -6.0795 0.0016 14 6 1.4453 -7.4044 0.0016 15 8 0.4935 -7.4971 -1.0602 16 6 0.8728 -7.7852 1.3772 17 6 1.2864 -9.2322 1.0612 18 6 2.3528 -8.6398 0.1249 19 1 -0.4850 0.8401 -0.0004 20 1 2.9187 -3.6478 0.0002 21 1 0.5892 -4.9743 -0.8886 22 1 0.5899 -4.9740 0.8914 23 1 2.8371 -6.0213 0.8916 24 1 2.8370 -6.0222 -0.8884 25 1 -0.0803 -6.7231 -1.1427 26 1 1.4183 -7.3478 2.2134 27 1 -0.2056 -7.6464 1.4549 28 1 0.5169 -9.8026 0.5409 29 1 1.7032 -9.7639 1.9166 30 1 2.4693 -9.1908 -0.8082 31 1 3.3029 -8.4361 0.6188 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308419485.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:16 Heat of formation + Delta-G solvation = -107.751959 kcal Electronic energy + Delta-G solvation = -14092.872307 eV Core-core repulsion = 11566.335150 eV Total energy + Delta-G solvation = -2526.537158 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.76796 -39.27463 -35.77732 -35.40339 -34.50450 -31.49153 -28.44272 -26.74118 -25.54864 -22.72350 -21.75022 -20.58383 -19.23644 -17.70214 -17.26280 -16.69949 -16.17593 -16.01374 -15.73393 -15.44473 -14.57022 -14.29051 -14.23675 -13.35418 -13.11804 -13.08238 -12.74504 -12.71809 -12.61604 -12.14992 -12.03913 -11.97958 -11.74339 -11.06820 -10.93947 -10.60912 -9.87856 -9.50686 -8.30224 -6.87123 1.40663 1.42150 1.57671 2.24687 2.46046 3.03404 3.12486 3.56931 3.60541 3.69984 3.92212 4.00502 4.23194 4.31029 4.53467 4.63204 4.81182 4.84383 4.98325 5.05099 5.05183 5.15958 5.31138 5.37052 5.45347 5.86329 6.22079 6.25544 6.67118 6.85694 7.53348 8.47465 8.66094 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.077018 B = 0.005656 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.462480 B = 4949.304351 C = 5087.720601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.028 3.972 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.534 3.466 10 O -0.634 6.634 11 N -0.755 5.755 12 C 0.132 3.868 13 C -0.130 4.130 14 C 0.101 3.899 15 O -0.561 6.561 16 C -0.170 4.170 17 C -0.128 4.128 18 C -0.120 4.120 19 H 0.275 0.725 20 H 0.396 0.604 21 H 0.033 0.967 22 H 0.033 0.967 23 H 0.094 0.906 24 H 0.078 0.922 25 H 0.385 0.615 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.500 -12.570 1.872 14.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.612 4.612 8 H 0.107 0.893 9 C 0.338 3.662 10 O -0.521 6.521 11 N -0.410 5.410 12 C 0.008 3.992 13 C -0.168 4.168 14 C 0.059 3.941 15 O -0.369 6.369 16 C -0.208 4.208 17 C -0.166 4.166 18 C -0.157 4.157 19 H 0.085 0.915 20 H 0.230 0.770 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.113 0.887 24 H 0.096 0.904 25 H 0.235 0.765 26 H 0.114 0.886 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.734 -13.094 1.790 14.832 hybrid contribution -0.084 1.328 -0.028 1.331 sum 6.651 -11.765 1.762 13.629 Atomic orbital electron populations 1.70190 1.09616 1.29001 1.36466 1.27004 0.95526 1.05059 0.91130 0.84991 0.78764 0.74917 0.79433 1.18614 1.19802 1.17105 1.21466 0.94825 0.90113 1.54760 0.89299 1.18664 0.86888 0.84512 0.76117 1.90547 1.16241 1.88045 1.57277 1.45791 1.09358 1.04685 1.81146 1.20899 0.95090 0.84229 0.99012 1.22227 0.98056 0.92352 1.04201 1.22361 0.90289 0.94164 0.87278 1.86373 1.50604 1.46649 1.53248 1.23678 1.01388 0.98092 0.97631 1.22718 0.98542 0.95536 0.99777 1.23083 0.97855 0.94217 1.00565 0.91537 0.76996 0.94915 0.94843 0.88724 0.90362 0.76513 0.88555 0.92133 0.90643 0.89533 0.90917 0.86863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.80 11.83 21.84 0.26 -50.54 16 2 C 0.03 1.56 5.50 85.31 0.47 2.02 16 3 Si 1.00 40.83 29.56 68.60 2.03 42.86 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 7 C -0.58 -32.73 9.54 24.83 0.24 -32.50 16 8 H 0.09 4.50 7.85 -2.91 -0.02 4.47 16 9 C 0.53 31.31 7.75 86.36 0.67 31.97 16 10 O -0.63 -42.97 15.02 -4.30 -0.06 -43.03 16 11 N -0.76 -33.82 5.55 -467.40 -2.59 -36.42 16 12 C 0.13 5.01 5.24 86.38 0.45 5.46 16 13 C -0.13 -3.47 4.97 30.59 0.15 -3.32 16 14 C 0.10 2.49 1.39 -10.27 -0.01 2.47 16 15 O -0.56 -15.96 13.40 -148.98 -2.00 -17.95 16 16 C -0.17 -3.87 7.32 31.12 0.23 -3.65 16 17 C -0.13 -2.44 8.02 31.12 0.25 -2.19 16 18 C -0.12 -2.33 7.47 31.12 0.23 -2.10 16 19 H 0.27 15.31 8.29 -92.70 -0.77 14.54 16 20 H 0.40 15.06 8.45 -92.71 -0.78 14.28 16 21 H 0.03 1.32 6.72 -2.38 -0.02 1.30 16 22 H 0.03 1.37 8.05 -2.38 -0.02 1.35 16 23 H 0.09 2.20 8.05 -2.39 -0.02 2.18 16 24 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.38 10.47 7.13 -74.06 -0.53 9.94 16 26 H 0.10 2.02 8.04 -2.39 -0.02 2.00 16 27 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.11 1.72 8.10 -2.39 -0.02 1.71 16 Total: -1.00 -75.75 265.26 0.13 -75.62 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: -0.17 Total: 31.29 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 2.68 Total: -1.82 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -2.34 Total: -86.96 kcal Atomic # 8 Polarization: -58.92 SS G_CDS: -2.06 Total: -60.98 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -75.75 0.13 -75.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308419485.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.134 kcal (2) G-P(sol) polarization free energy of solvation -75.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds