Wall clock time and date at job start Sun Mar 29 2020 21:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47032 * 2 1 4 4 N 1.46901 * 109.47365 * 120.00148 * 2 1 3 5 5 C 1.46896 * 111.00046 * 156.76456 * 4 2 1 6 6 C 1.53343 * 109.42011 * 273.66082 * 5 4 2 7 7 C 1.53197 * 109.14754 * 178.67449 * 6 5 4 8 8 N 1.46920 * 108.89472 * 54.58283 * 7 6 5 9 9 C 1.36933 * 120.63541 * 126.29353 * 8 7 6 10 10 H 1.08002 * 119.99780 * 325.85795 * 9 8 7 11 11 C 1.38812 * 120.00100 * 145.85729 * 9 8 7 12 12 N 1.31617 * 120.00071 * 344.59678 * 11 9 8 13 13 Si 1.86807 * 120.00023 * 164.60298 * 11 9 8 14 14 H 1.48503 * 109.46830 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47214 * 119.99740 * 13 11 9 16 16 H 1.48499 * 109.46903 * 239.99971 * 13 11 9 17 17 C 1.46929 * 118.73765 * 306.32142 * 8 7 6 18 18 C 1.53048 * 109.45782 * 153.53329 * 5 4 2 19 19 H 1.09002 * 109.47751 * 56.85126 * 1 2 3 20 20 H 1.09001 * 109.47232 * 176.85522 * 1 2 3 21 21 H 1.09003 * 109.47214 * 296.85606 * 1 2 3 22 22 H 1.09000 * 109.47161 * 240.00100 * 2 1 3 23 23 H 1.09002 * 109.46988 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.47301 * 300.00153 * 3 2 1 25 25 H 1.09001 * 109.47152 * 60.00587 * 3 2 1 26 26 H 1.00901 * 111.00128 * 280.72498 * 4 2 1 27 27 H 1.08999 * 109.45983 * 33.56702 * 5 4 2 28 28 H 1.09002 * 109.68631 * 58.71255 * 6 5 4 29 29 H 1.08994 * 109.48030 * 298.51267 * 6 5 4 30 30 H 1.08996 * 109.58968 * 294.71726 * 7 6 5 31 31 H 1.09005 * 109.58181 * 174.44124 * 7 6 5 32 32 H 0.96997 * 120.00218 * 179.97438 * 12 11 9 33 33 H 1.08994 * 109.59119 * 173.39660 * 17 8 7 34 34 H 1.09001 * 109.58030 * 293.67883 * 17 8 7 35 35 H 1.09000 * 109.49257 * 61.43397 * 18 5 4 36 36 H 1.08996 * 109.52400 * 301.35541 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3832 -1.1992 0.9949 6 6 3.3196 -2.5840 0.3395 7 6 4.7448 -3.0920 0.0989 8 7 5.4831 -3.0570 1.3686 9 6 6.1156 -4.1766 1.8391 10 1 5.6885 -5.1527 1.6619 11 6 7.3056 -4.0572 2.5436 12 7 7.9831 -2.9294 2.5047 13 14 7.9458 -5.4971 3.5468 14 1 7.0061 -6.6407 3.4266 15 1 9.2823 -5.8987 3.0393 16 1 8.0574 -5.0964 4.9724 17 6 5.5293 -1.7979 2.1244 18 6 4.0967 -1.3022 2.3450 19 1 -0.3635 0.5619 -0.8604 20 1 -0.3634 -1.0261 -0.0564 21 1 -0.3634 0.4643 0.9168 22 1 1.8933 -0.5138 -0.8900 23 1 3.1299 1.4425 -0.0005 24 1 1.6766 1.9563 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.9749 -0.0907 2.0081 27 1 3.9310 -0.5158 0.3460 28 1 2.7922 -2.5161 -0.6120 29 1 2.7938 -3.2744 0.9989 30 1 5.2422 -2.4531 -0.6308 31 1 4.7096 -4.1152 -0.2753 32 1 8.8144 -2.8457 2.9974 33 1 6.0097 -1.9674 3.0880 34 1 6.0928 -1.0541 1.5610 35 1 3.5633 -2.0045 2.9856 36 1 4.1201 -0.3217 2.8204 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335552812.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:50 Heat of formation + Delta-G solvation = 4.135390 kcal Electronic energy + Delta-G solvation = -14810.827457 eV Core-core repulsion = 12522.693855 eV Total energy + Delta-G solvation = -2288.133602 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.30993 -35.98422 -32.94438 -30.94824 -29.77182 -28.14926 -27.09079 -24.48184 -22.29837 -21.49724 -20.28431 -19.00626 -16.70755 -15.51537 -14.87889 -14.71340 -14.00239 -13.67049 -13.46346 -13.31007 -12.92531 -12.51644 -12.28053 -12.16002 -11.67990 -11.32177 -11.21472 -11.00348 -10.85780 -10.69582 -10.56047 -10.26325 -10.13936 -9.92305 -9.54831 -9.36962 -8.44674 -8.06108 -6.54161 -5.76165 -3.23890 3.38798 3.46626 3.49612 4.42975 4.52600 4.97756 5.19643 5.36235 5.40838 5.49581 5.59345 5.62409 5.72745 5.82458 5.87500 5.92685 6.02490 6.18665 6.23415 6.32644 6.40831 6.57549 6.63422 6.70261 6.71956 6.90096 7.11443 7.37211 7.46372 7.64330 7.74500 7.85441 8.53021 9.25922 9.87901 10.49222 11.32366 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.065628 B = 0.006916 C = 0.006707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.542714 B = 4047.533335 C = 4173.802514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.076 3.924 3 C -0.182 4.182 4 N -0.685 5.685 5 C 0.096 3.904 6 C -0.116 4.116 7 C 0.144 3.856 8 N -0.590 5.590 9 C -0.254 4.254 10 H 0.063 0.937 11 C 0.007 3.993 12 N -0.902 5.902 13 Si 0.901 3.099 14 H -0.276 1.276 15 H -0.290 1.290 16 H -0.289 1.289 17 C 0.178 3.822 18 C -0.141 4.141 19 H 0.051 0.949 20 H 0.059 0.941 21 H 0.051 0.949 22 H 0.075 0.925 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.335 0.665 27 H 0.036 0.964 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.013 0.987 31 H 0.054 0.946 32 H 0.253 0.747 33 H 0.077 0.923 34 H 0.017 0.983 35 H 0.062 0.938 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.001 6.424 -3.423 13.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.034 4.034 3 C -0.241 4.241 4 N -0.315 5.315 5 C -0.013 4.013 6 C -0.156 4.156 7 C 0.018 3.982 8 N -0.313 5.313 9 C -0.384 4.384 10 H 0.080 0.920 11 C -0.192 4.192 12 N -0.545 5.545 13 Si 0.730 3.270 14 H -0.201 1.201 15 H -0.217 1.217 16 H -0.215 1.215 17 C 0.051 3.949 18 C -0.181 4.181 19 H 0.070 0.930 20 H 0.078 0.922 21 H 0.070 0.930 22 H 0.094 0.906 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.153 0.847 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.035 0.965 35 H 0.081 0.919 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.136 5.845 -3.511 13.058 hybrid contribution 0.962 0.276 0.578 1.156 sum -10.174 6.120 -2.933 12.230 Atomic orbital electron populations 1.21750 0.94940 1.01919 1.00887 1.21563 0.95298 0.92089 0.94433 1.22522 1.01583 0.98204 1.01795 1.60743 1.24739 1.41318 1.04713 1.21515 0.86569 0.95908 0.97335 1.22064 0.98765 0.95937 0.98858 1.20939 0.89994 0.98360 0.88943 1.43971 1.59759 1.08838 1.18763 1.19174 1.01086 0.86595 1.31577 0.91981 1.25201 0.95386 0.96972 1.01680 1.70038 1.15262 1.25800 1.43420 0.86255 0.78490 0.82255 0.79972 1.20130 1.21675 1.21542 1.20630 0.89800 0.87014 0.97435 1.22396 1.00479 0.99695 0.95524 0.93026 0.92205 0.92993 0.90637 0.92622 0.92518 0.92739 0.84719 0.94588 0.93629 0.91892 0.96881 0.92785 0.93723 0.90480 0.96459 0.91882 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.52 37.15 0.35 -1.14 16 2 C 0.08 0.97 3.02 -67.72 -0.20 0.76 16 3 C -0.18 -2.08 9.15 37.16 0.34 -1.74 16 4 N -0.68 -10.15 6.06 -99.53 -0.60 -10.75 16 5 C 0.10 1.68 2.26 -67.51 -0.15 1.53 16 6 C -0.12 -2.18 5.61 -26.45 -0.15 -2.33 16 7 C 0.14 3.18 6.50 -3.71 -0.02 3.15 16 8 N -0.59 -15.24 2.96 -172.32 -0.51 -15.75 16 9 C -0.25 -7.16 9.52 -15.06 -0.14 -7.30 16 10 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 11 C 0.01 0.19 4.91 -17.43 -0.09 0.11 16 12 N -0.90 -26.64 11.57 55.49 0.64 -26.00 16 13 Si 0.90 21.93 29.58 -169.99 -5.03 16.91 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 C 0.18 4.32 5.26 -3.71 -0.02 4.30 16 18 C -0.14 -2.75 5.35 -26.61 -0.14 -2.90 16 19 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.08 1.03 7.22 -51.93 -0.37 0.65 16 23 H 0.05 0.70 7.31 -51.93 -0.38 0.32 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.58 8.13 -51.93 -0.42 0.16 16 26 H 0.33 4.66 8.08 -39.29 -0.32 4.35 16 27 H 0.04 0.66 6.98 -51.93 -0.36 0.30 16 28 H 0.05 0.77 7.51 -51.93 -0.39 0.38 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 1.17 7.93 -51.93 -0.41 0.76 16 32 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.08 2.07 6.49 -51.93 -0.34 1.74 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 281.67 15.07 4.24 4.24 Total: -1.00 -29.24 281.67 -7.83 -37.07 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.35 Total: -0.17 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -0.23 Total: -5.55 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.47 Total: -52.50 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.24 -7.83 -37.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335552812.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.204 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds