Wall clock time and date at job start Sun Mar 29 2020 21:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47032 * 2 1 4 4 N 1.46901 * 109.47365 * 120.00148 * 2 1 3 5 5 C 1.46896 * 111.00046 * 156.76456 * 4 2 1 6 6 C 1.53343 * 109.42011 * 273.66082 * 5 4 2 7 7 C 1.53197 * 109.14754 * 178.67449 * 6 5 4 8 8 N 1.46920 * 108.89472 * 54.58283 * 7 6 5 9 9 C 1.36933 * 120.63541 * 126.29353 * 8 7 6 10 10 H 1.08002 * 119.99780 * 325.85795 * 9 8 7 11 11 C 1.38812 * 120.00100 * 145.85729 * 9 8 7 12 12 N 1.31617 * 120.00071 * 344.59678 * 11 9 8 13 13 Si 1.86807 * 120.00023 * 164.60298 * 11 9 8 14 14 H 1.48503 * 109.46830 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47214 * 119.99740 * 13 11 9 16 16 H 1.48499 * 109.46903 * 239.99971 * 13 11 9 17 17 C 1.46929 * 118.73765 * 306.32142 * 8 7 6 18 18 C 1.53048 * 109.45782 * 153.53329 * 5 4 2 19 19 H 1.09002 * 109.47751 * 56.85126 * 1 2 3 20 20 H 1.09001 * 109.47232 * 176.85522 * 1 2 3 21 21 H 1.09003 * 109.47214 * 296.85606 * 1 2 3 22 22 H 1.09000 * 109.47161 * 240.00100 * 2 1 3 23 23 H 1.09002 * 109.46988 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.47301 * 300.00153 * 3 2 1 25 25 H 1.09001 * 109.47152 * 60.00587 * 3 2 1 26 26 H 1.00901 * 111.00128 * 280.72498 * 4 2 1 27 27 H 1.08999 * 109.45983 * 33.56702 * 5 4 2 28 28 H 1.09002 * 109.68631 * 58.71255 * 6 5 4 29 29 H 1.08994 * 109.48030 * 298.51267 * 6 5 4 30 30 H 1.08996 * 109.58968 * 294.71726 * 7 6 5 31 31 H 1.09005 * 109.58181 * 174.44124 * 7 6 5 32 32 H 0.96997 * 120.00218 * 179.97438 * 12 11 9 33 33 H 1.08994 * 109.59119 * 173.39660 * 17 8 7 34 34 H 1.09001 * 109.58030 * 293.67883 * 17 8 7 35 35 H 1.09000 * 109.49257 * 61.43397 * 18 5 4 36 36 H 1.08996 * 109.52400 * 301.35541 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3832 -1.1992 0.9949 6 6 3.3196 -2.5840 0.3395 7 6 4.7448 -3.0920 0.0989 8 7 5.4831 -3.0570 1.3686 9 6 6.1156 -4.1766 1.8391 10 1 5.6885 -5.1527 1.6619 11 6 7.3056 -4.0572 2.5436 12 7 7.9831 -2.9294 2.5047 13 14 7.9458 -5.4971 3.5468 14 1 7.0061 -6.6407 3.4266 15 1 9.2823 -5.8987 3.0393 16 1 8.0574 -5.0964 4.9724 17 6 5.5293 -1.7979 2.1244 18 6 4.0967 -1.3022 2.3450 19 1 -0.3635 0.5619 -0.8604 20 1 -0.3634 -1.0261 -0.0564 21 1 -0.3634 0.4643 0.9168 22 1 1.8933 -0.5138 -0.8900 23 1 3.1299 1.4425 -0.0005 24 1 1.6766 1.9563 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.9749 -0.0907 2.0081 27 1 3.9310 -0.5158 0.3460 28 1 2.7922 -2.5161 -0.6120 29 1 2.7938 -3.2744 0.9989 30 1 5.2422 -2.4531 -0.6308 31 1 4.7096 -4.1152 -0.2753 32 1 8.8144 -2.8457 2.9974 33 1 6.0097 -1.9674 3.0880 34 1 6.0928 -1.0541 1.5610 35 1 3.5633 -2.0045 2.9856 36 1 4.1201 -0.3217 2.8204 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335552812.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:50 Heat of formation + Delta-G solvation = -14.508079 kcal Electronic energy + Delta-G solvation = -14811.635898 eV Core-core repulsion = 12522.693855 eV Total energy + Delta-G solvation = -2288.942043 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.79254 -37.46804 -34.69718 -32.67926 -31.52717 -29.69087 -27.95896 -26.41902 -23.96878 -23.22532 -21.39569 -20.71990 -18.70265 -16.98776 -16.60457 -15.97705 -15.66641 -15.34550 -14.98468 -14.78411 -14.35551 -14.01272 -13.75327 -13.20724 -13.07599 -13.02840 -12.73261 -12.61320 -12.42610 -12.15670 -12.03187 -11.94315 -11.86024 -11.60551 -11.24377 -11.09796 -10.57896 -9.27185 -8.62530 -7.89671 -5.41698 1.45370 1.46926 1.58395 2.49982 3.18948 3.30434 3.68987 3.96054 4.07108 4.14059 4.30298 4.41338 4.49687 4.54053 4.69946 4.77236 4.84269 4.87739 4.94659 4.99204 5.03141 5.11518 5.20195 5.26898 5.30866 5.38661 5.44133 5.50000 5.64819 5.70697 6.23605 6.40962 6.59142 7.14377 7.83052 8.39206 9.16726 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.065628 B = 0.006916 C = 0.006707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.542714 B = 4047.533335 C = 4173.802514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.073 3.927 3 C -0.177 4.177 4 N -0.683 5.683 5 C 0.107 3.893 6 C -0.103 4.103 7 C 0.141 3.859 8 N -0.610 5.610 9 C -0.269 4.269 10 H 0.061 0.939 11 C -0.045 4.045 12 N -0.935 5.935 13 Si 0.968 3.032 14 H -0.266 1.266 15 H -0.289 1.289 16 H -0.288 1.288 17 C 0.184 3.816 18 C -0.127 4.127 19 H 0.069 0.931 20 H 0.052 0.948 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.039 0.961 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.342 0.658 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.009 0.991 31 H 0.053 0.947 32 H 0.251 0.749 33 H 0.044 0.956 34 H -0.004 1.004 35 H 0.055 0.945 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.673 6.733 -3.600 14.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.036 4.036 3 C -0.236 4.236 4 N -0.315 5.315 5 C -0.003 4.003 6 C -0.143 4.143 7 C 0.015 3.985 8 N -0.334 5.334 9 C -0.399 4.399 10 H 0.079 0.921 11 C -0.241 4.241 12 N -0.580 5.580 13 Si 0.795 3.205 14 H -0.190 1.190 15 H -0.216 1.216 16 H -0.214 1.214 17 C 0.058 3.942 18 C -0.166 4.166 19 H 0.088 0.912 20 H 0.071 0.929 21 H 0.076 0.924 22 H 0.085 0.915 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.161 0.839 27 H 0.049 0.951 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.014 0.986 35 H 0.074 0.926 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.844 6.160 -3.703 14.718 hybrid contribution 1.462 0.207 0.572 1.583 sum -11.382 6.367 -3.131 13.412 Atomic orbital electron populations 1.21696 0.93220 1.01901 1.02071 1.21663 0.96543 0.92501 0.92932 1.22459 1.00497 0.97527 1.03119 1.60679 1.22365 1.42350 1.06082 1.21250 0.88011 0.95364 0.95652 1.21880 0.96269 0.96177 0.99969 1.21065 0.91502 0.98527 0.87391 1.44251 1.60119 1.08642 1.20339 1.19478 1.01341 0.87397 1.31700 0.92118 1.25973 0.95672 0.99572 1.02839 1.70180 1.15617 1.27796 1.44372 0.85209 0.77754 0.79388 0.78100 1.19036 1.21609 1.21420 1.20448 0.92341 0.86224 0.95193 1.22162 0.97175 1.00381 0.96906 0.91160 0.92926 0.92427 0.91509 0.94207 0.90880 0.91793 0.83856 0.95117 0.91253 0.92875 0.97279 0.92893 0.93984 0.93771 0.98602 0.92612 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.52 71.98 0.69 -1.75 16 2 C 0.07 1.66 3.02 44.91 0.14 1.80 16 3 C -0.18 -3.56 9.15 71.98 0.66 -2.90 16 4 N -0.68 -18.63 6.06 -468.82 -2.84 -21.47 16 5 C 0.11 3.61 2.26 45.05 0.10 3.71 16 6 C -0.10 -3.73 5.61 30.78 0.17 -3.56 16 7 C 0.14 6.19 6.50 86.37 0.56 6.76 16 8 N -0.61 -31.96 2.96 -699.10 -2.07 -34.03 16 9 C -0.27 -15.32 9.52 84.03 0.80 -14.52 16 10 H 0.06 3.40 7.88 -2.91 -0.02 3.38 16 11 C -0.04 -2.55 4.91 84.86 0.42 -2.13 16 12 N -0.93 -56.53 11.57 21.65 0.25 -56.28 16 13 Si 0.97 45.56 29.58 68.60 2.03 47.59 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 15 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 16 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 17 C 0.18 9.14 5.26 86.36 0.45 9.60 16 18 C -0.13 -4.86 5.35 30.67 0.16 -4.69 16 19 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 20 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 21 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.07 1.64 7.22 -2.39 -0.02 1.63 16 23 H 0.04 0.92 7.31 -2.39 -0.02 0.91 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 26 H 0.34 8.61 8.08 -89.69 -0.72 7.89 16 27 H 0.03 1.09 6.98 -2.39 -0.02 1.07 16 28 H 0.07 2.18 7.51 -2.39 -0.02 2.16 16 29 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 2.29 7.93 -2.38 -0.02 2.27 16 32 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 33 H 0.04 2.45 6.49 -2.39 -0.02 2.43 16 34 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.07 2.26 8.10 -2.39 -0.02 2.24 16 Total: -1.00 -62.84 281.67 1.83 -61.01 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.30 Total: 10.87 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 4.15 Total: -7.69 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -4.66 Total: -111.78 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -62.84 1.83 -61.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335552812.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.507 kcal (2) G-P(sol) polarization free energy of solvation -62.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds